Title: Get XKCD comic from R
Diff between RXKCD versions 1.7-3 dated 2012-06-06 and 1.7-4 dated 2012-08-11
Description: This package allows the visualization of your favorite
XKCD comic strip directly from R. XKCD web comic content is
provided under the Creative Commons Attribution-NonCommercial
2.5 License.
Author: Paolo Sonego
Maintainer: Paolo Sonego
DESCRIPTION | 6
MD5 | 6
R/getXKCD.R | 50
inst/xkcd/xkcd.csv | 3442 ++++++++++++++++++++++++++++++++++++++---------------
4 files changed, 2548 insertions(+), 956 deletions(-)
Title: Easy analysis and visualization of factorial experiments.
Diff between ez versions 4.0-2 dated 2012-08-07 and 4.1-1 dated 2012-08-11
Description: This package facilitates easy analysis of factorial
experiments, including purely within-Ss designs (a.k.a.
"repeated measures"), purely between-Ss designs, and mixed
within-and-between-Ss designs. The functions in this package
aim to provide simple, intuitive and consistent specification
of data analysis and visualization. Visualization functions
also include design visualization for pre-analysis data
auditing, and correlation matrix visualization. Finally, this
package includes functions for non-parametric analysis,
including permutation tests and bootstrap resampling. The
bootstrap function obtains predictions either by cell means or
by more advanced/powerful mixed effects models, yielding
predictions and confidence intervals that may be easily
visualized at any level of the experiment's design.
Author: Michael A. Lawrence
Maintainer: Michael A. Lawrence
CHANGES | 10 +++++
DESCRIPTION | 12 +++---
MD5 | 44 ++++++++++++------------
R/ezMixed.R | 87 ++++++++++++++++++++++++++++++-------------------
R/ezPlot2.R | 2 -
man/ANT.Rd | 2 -
man/ANT2.Rd | 2 -
man/ez-internal.Rd | 2 -
man/ez-package.Rd | 6 +--
man/ezANOVA.Rd | 2 -
man/ezBoot.Rd | 2 -
man/ezCor.Rd | 2 -
man/ezDesign.Rd | 2 -
man/ezMixed.Rd | 6 ++-
man/ezMixedProgress.Rd | 4 +-
man/ezPerm.Rd | 2 -
man/ezPlot.Rd | 2 -
man/ezPlot2.Rd | 2 -
man/ezPrecis.Rd | 2 -
man/ezPredict.Rd | 2 -
man/ezResample.Rd | 2 -
man/ezStats.Rd | 2 -
man/progress_time.Rd | 2 -
23 files changed, 119 insertions(+), 82 deletions(-)
Title: Modern measures of population differentiation
Diff between mmod versions 0.31 dated 2012-05-03 and 1.0 dated 2012-08-11
Description: mmod provides functions for measuring population
divergence from genotypic data
Author: David Winter
Maintainer: David Winter
mmod-0.31/mmod/.gitignore |only
mmod-1.0/mmod/DESCRIPTION | 6 +++---
mmod-1.0/mmod/MD5 | 29 +++++++++++++++--------------
mmod-1.0/mmod/NAMESPACE | 10 +++++-----
mmod-1.0/mmod/NEWS | 5 +++++
mmod-1.0/mmod/R/D_Jost.R | 4 ++--
mmod-1.0/mmod/R/Gst_Hedrick.R | 4 ++--
mmod-1.0/mmod/R/HsHt.R | 2 +-
mmod-1.0/mmod/R/diff_stats.R | 4 ++--
mmod-1.0/mmod/R/dist.codom.R | 4 ++++
mmod-1.0/mmod/R/rgenotypes.R | 7 ++++---
mmod-1.0/mmod/inst/CITATION |only
mmod-1.0/mmod/man/D_Jost.Rd | 6 +++---
mmod-1.0/mmod/man/Gst_Hedrick.Rd | 8 ++++----
mmod-1.0/mmod/man/Gst_Nei.Rd | 8 ++++----
mmod-1.0/mmod/man/Phi_st_Meirmans.Rd | 6 +++---
mmod-1.0/mmod/man/rgenotypes.Rd | 5 ++++-
17 files changed, 61 insertions(+), 47 deletions(-)
Title: Multiplicity control using Pooled LIS statistic
Diff between PLIS versions 1.0 dated 2009-08-19 and 1.1 dated 2012-08-11
Description: PLIS is a multiple testing procedure for testing several
groups of hypotheses. Linear dependency is expected from the
hypotheses within the same group and is modeled by hidden
Markov Models. It is noted that, for PLIS, a smaller p value
does not necessarily imply more significance because of
dependency among the hypotheses. A typical application of PLIS
is to analyze genome wide association studies datasets, where
SNPs from the same chromosome are treated as a group and
exhibit strong linear genomic dependency.
Author: Zhi Wei & Wenguang Sun
Maintainer: Zhi Wei
DESCRIPTION | 15 -
MD5 |only
NAMESPACE |only
R/bwfw.hmm.R | 225 +++++++---------------
R/bwfw1.hmm.R | 189 +++++--------------
R/em.hmm.R | 463 +++++++++++++++--------------------------------
R/plis.R | 35 +--
data/GWAS.SampleData.rda |binary
man/PLIS-package.Rd | 4
man/em.hmm.Rd | 62 +++---
10 files changed, 345 insertions(+), 648 deletions(-)
Title: A R Package For Gene Enrichment Disequilibrium Analysis
Diff between EDanalysis versions 1.0 dated 2012-08-04 and 1.0.1 dated 2012-08-11
Description: An R package for gene Enrichment Disequilibrium analysis.
Author: Yongshuai Jiang
Maintainer: Yongshuai Jiang
DESCRIPTION | 8 ++++----
MD5 | 44 ++++++++++++++++++++++----------------------
R/AnnGeneToGO.R | 7 +++++--
R/ED.R | 4 +++-
R/EP.R | 4 +++-
R/ER.R | 3 ++-
R/EnrichFisher.R | 3 ++-
R/EnrichHyper.R | 3 ++-
R/EnrichTandD.R | 5 +++--
R/PlotGOgraph.R | 2 +-
R/RE.R | 3 ++-
man/AnnGeneToGO.Rd | 2 +-
man/ED.Rd | 2 +-
man/EDAnnoDataExample.Rd | 2 +-
man/EDanalysis-package.Rd | 8 ++++----
man/EP.Rd | 2 +-
man/ER.Rd | 2 +-
man/EnrichFisher.Rd | 2 +-
man/EnrichHyper.Rd | 2 +-
man/EnrichTandD.Rd | 7 ++-----
man/FilterTandDresults.Rd | 2 +-
man/PlotGOgraph.Rd | 6 +++---
man/RE.Rd | 2 +-
23 files changed, 67 insertions(+), 58 deletions(-)