New package PPtree with initial version 2.0.6
Package: PPtree
Version: 2.0.6
Date: 2012-08-18
Title: Projection pursuit classification tree
Author: Eun-Kyung Lee, Yoondong Lee
Maintainer: Eun-Kyung Lee
Depends: MASS, penalizedLDA
Description: Projection pursuit classification tree using LDA, Lr or PDA projection pursuit index
License: LGPL-2.1
Packaged: 2012-08-17 21:28:42 UTC; EKLee
Repository: CRAN
Date/Publication: 2012-08-17 22:01:57

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Package ModelMap updated to version 2.3.4 with previous version 2.3.2 dated 2012-06-08

Title: Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps.
Description: This package will create sophisticated models of training data and validate the models with an independent test set, cross validation, or in the case of Random Forest Models, with Out Of Bag (OOB) predictions on the training data. It will create graphs and tables of the model validation results. It will apply these models to GIS .img files of predictors to create detailed prediction surfaces. It will handle large predictor files for map making, by reading in the .img files in chunks, and output to the .txt file the prediction for each data chunk, before reading the next chunk of data.
Author: Elizabeth Freeman, Tracey Frescino
Maintainer: Elizabeth Freeman

Diff between ModelMap versions 2.3.2 dated 2012-06-08 and 2.3.4 dated 2012-08-17

 DESCRIPTION                   |   18 +++++++++---------
 MD5                           |   20 ++++++++++----------
 inst/CHANGELOG                |    7 +++++++
 man/ModelMap-package.Rd       |   16 ++++++++--------
 man/build.rastLUT.Rd          |    4 ++--
 man/get.test.Rd               |    2 +-
 man/model.build.Rd            |   14 +++++++-------
 man/model.diagnostics.Rd      |    8 ++++----
 man/model.importance.plot.Rd  |   20 ++++++++++----------
 man/model.interaction.plot.Rd |   12 ++++++------
 man/model.mapmake.Rd          |    6 +++---
 11 files changed, 67 insertions(+), 60 deletions(-)

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Package PresenceAbsence updated to version 1.1.9 with previous version 1.1.5 dated 2010-12-07

Title: Presence-Absence Model Evaluation.
Description: This package provides a set of functions useful when evaluating the results of presence-absence models. Package includes functions for calculating threshold dependent measures such as confusion matrices, pcc, sensitivity, specificity, and Kappa, and produces plots of each measure as the threshold is varied. It will calculate optimal threshold choice according to a choice of optimization criteria. It also includes functions to plot the threshold independent ROC curves along with the associated AUC (area under the curve).
Author: Elizabeth Freeman
Maintainer: Elizabeth Freeman

Diff between PresenceAbsence versions 1.1.5 dated 2010-12-07 and 1.1.9 dated 2012-08-17

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 28 files changed, 59 insertions(+), 61 deletions(-)

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New package breakage with initial version 1.0
Package: breakage
Type: Package
Title: SICM pipette tip geometry estimation
Version: 1.0
Date: 2012-06-19
Author: Matthew Caldwell
Maintainer: Matthew Caldwell
Description: Estimates geometry of SICM pipette tips by fitting a physical model to recorded breakage-current data.
License: Artistic-2.0
LazyLoad: yes
LazyData: yes
Depends: Imap
Packaged: 2012-08-17 16:03:29 UTC; matt
Repository: CRAN
Date/Publication: 2012-08-17 19:55:56

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Package pencopula updated to version 0.3.4 with previous version 0.3.2 dated 2012-05-31

Title: Flexible Copula Density Estimation with Penalized Hierarchical B-Splines
Description: Flexible copula density estimation with penalized hierarchical B-Splines.
Author: Christian Schellhase
Maintainer: Christian Schellhase

Diff between pencopula versions 0.3.2 dated 2012-05-31 and 0.3.4 dated 2012-08-17

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 14 files changed, 42 insertions(+), 110 deletions(-)

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Package JGL updated to version 2.2 with previous version 2.1 dated 2012-07-27

Title: Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
Description: The Joint Graphical Lasso is a generalized method for estimating Gaussian graphical models/ sparse inverse covariance matrices/ biological networks on multiple classes of data. We solve JGL under two penalty functions: The Fused Graphical Lasso (FGL), which employs a fused penalty to encourage inverse covariance matrices to be similar across classes, and the Group Graphical Lasso (GGL), which encourages similar network structure between classes. FGL is recommended over GGL for most applications.
Author: Patrick Danaher
Maintainer: Patrick Danaher

Diff between JGL versions 2.1 dated 2012-07-27 and 2.2 dated 2012-08-17

 DESCRIPTION                |    6 +++---
 MD5                        |    6 +++---
 R/JGL.r                    |   25 ++++++++++++++++++++-----
 R/admm.iters.unconnected.r |    2 +-
 4 files changed, 27 insertions(+), 12 deletions(-)

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New package DAKS with initial version 2.1-2
Package: DAKS
Type: Package
Title: Data Analysis and Knowledge Spaces
Version: 2.1-2
Date: 2012-08-17
Authors@R: c(person("Ali", "Uenlue", email = "ali.uenlue@tum.de", role = c("aut", "cre")), person("Anatol", "Sargin", email = "anatol.sargin@generali.de", role = c("aut")))
Description: Functions and an example dataset for the psychometric theory of knowledge spaces. This package implements data analysis methods and procedures for simulating data and quasi orders and transforming different formulations in knowledge space theory.
Depends: R (>= 2.15.1), relations, sets
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
URL: http://www.meb.edu.tum.de/
Packaged: 2012-08-17 17:01:43 UTC; root
Author: Ali Uenlue [aut, cre], Anatol Sargin [aut]
Maintainer: Ali Uenlue
Repository: CRAN
Date/Publication: 2012-08-17 17:40:21

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Package ltm updated to version 0.9-8 with previous version 0.9-7 dated 2011-10-18

Title: Latent Trait Models under IRT
Description: Analysis of multivariate dichotomous and polytomous data using latent trait models under the Item Response Theory approach. It includes the Rasch, the Two-Parameter Logistic, the Birnbaum's Three-Parameter, the Graded Response, and the Generalized Partial Credit Models.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos

Diff between ltm versions 0.9-7 dated 2011-10-18 and 0.9-8 dated 2012-08-17

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Package arrayhelpers updated to version 0.76-20120816 with previous version 0.75-20120223 dated 2012-02-23

Title: Convenience functions for arrays
Description: Some convenient functions to work with arrays
Author: C. Beleites
Maintainer: C. Beleites

Diff between arrayhelpers versions 0.75-20120223 dated 2012-02-23 and 0.76-20120816 dated 2012-08-17

 DESCRIPTION      |    8 ++++----
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 8 files changed, 33 insertions(+), 19 deletions(-)

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Package XLConnect updated to version 0.2-1 with previous version 0.2-0 dated 2012-07-20

Title: Excel Connector for R
Description: Manipulate Excel files from R
Author: Mirai Solutions GmbH
Maintainer: Martin Studer

Diff between XLConnect versions 0.2-0 dated 2012-07-20 and 0.2-1 dated 2012-08-17

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 XLConnect-0.2-1/XLConnect/MD5                                                       |   48 ++++++----
 XLConnect-0.2-1/XLConnect/NAMESPACE                                                 |    4 
 XLConnect-0.2-1/XLConnect/NEWS                                                      |    8 +
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Package tractor.base updated to version 2.2.0 with previous version 2.1.0 dated 2012-03-13

Title: A package for reading, manipulating and visualising magnetic resonance images
Description: The tractor.base package consists of functions for working with magnetic resonance images. It can read and write image files stored in Analyze, NIfTI, MGH and DICOM formats (DICOM support is read only), generate images for use as regions of interest, and manipulate and visualise images.
Author: Jon Clayden
Maintainer: Jon Clayden

Diff between tractor.base versions 2.1.0 dated 2012-03-13 and 2.2.0 dated 2012-08-17

 DESCRIPTION                 |   10 -
 MD5                         |   34 ++---
 NAMESPACE                   |    3 
 R/05_serialise.R            |    4 
 R/08_sparse.R               |   94 ++++++++++++++--
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 man/MriImage-class.Rd       |   24 +++-
 man/SparseArray-class.Rd    |   14 +-
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 man/newMriImageFromFile.Rd  |    6 -
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Package spam updated to version 0.29-2 with previous version 0.29-1 dated 2012-05-05

Title: SPArse Matrix
Description: Set of function for sparse matrix algebra. Differences with SparseM/Matrix are: (1) we only support (essentially) one sparse matrix format, (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within GMRF. (4) S3 and S4 like-"compatible" ... and it is fast.
Author: Reinhard Furrer
Maintainer: Reinhard Furrer

Diff between spam versions 0.29-1 dated 2012-05-05 and 0.29-2 dated 2012-08-17

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Package SAScii updated to version 1.0 with previous version 0.3 dated 2012-07-06

Title: Import ASCII files directly into R using only a SAS input script
Description: Using any importation code designed for SAS users to read ASCII files into sas7bdat files, the SAScii package parses through the INPUT block of a (.sas) syntax file to design the parameters needed for a read.fwf function call. This allows the user to specify the location of the ASCII (often a .dat) file and the location of the .sas syntax file, and then load the data frame directly into R in just one step.
Author: Anthony Joseph Damico [aut, cre]
Maintainer: Anthony Joseph Damico

Diff between SAScii versions 0.3 dated 2012-07-06 and 1.0 dated 2012-08-17

 DESCRIPTION           |   15 +++--
 MD5                   |   10 +--
 R/parse.SAScii.R      |   19 +++----
 R/read.SAScii.R       |  128 +++++++++++++++++++++++++++++++++++++++++++++-----
 man/SAScii-package.Rd |    4 -
 man/read.SAScii.Rd    |   12 ++++
 6 files changed, 153 insertions(+), 35 deletions(-)

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New package weights with initial version 0.75
Package: weights
Type: Package
Title: Weighting and Weighted Statistics
Version: 0.75
Date: 2012-08-03
Author: Josh Pasek, with some assistance from Alex Tahk and some code modified from R-core
Maintainer: Josh Pasek
Description: This package currently provides a variety of functions for producing simple weighted statistics, such as weighted Pearson's correlations, partial correlations, Chi-Squareds, histograms, and t-tests. Also now includes some software for quickly recoding survey data. Future versions of the package will be more closely integrated with anesrake and additional weighting tools and will provide the option to find weighting benchmarks and weight data using a variety of methodologies. NOTE: Weighted partial correlation calculations temporarily pulled to address a bug.
Depends: Hmisc, anesrake, gdata
License: GPL-2
LazyLoad: yes
Packaged: 2012-08-08 06:09:07 UTC; jmping
X-CRAN-Original-Package: weights
X-CRAN-Comment: This package was removed for violations of copyright.
Repository: CRAN
Date/Publication: 2012-08-17 08:20:51

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New package PF with initial version 9.4
Package: PF
Type: Package
Title: Functions related to prevented fraction.
Version: 9.4
Date: 2012-08-14
Author: Dave Siev
Maintainer: Marie Vendettuoli
Description: Functions related to prevented fraction.
License: MIT
LazyLoad: yes
LazyData: yes
Depends: methods, grid, xtable, RColorBrewer, gdata
Suggests: R2wd
Collate: 'aaa.r' 'aab.r' 'class-rr1_tables.r' 'class-rror_tables.r' 'class-rrsc_tables.r' 'class-rrsi_tables.r' 'class-rrstr_tables.r' 'class.r' 'generics.r' 'getPFTable_generics.r' 'PFPackage.r' 'IDRlsi.r' 'IDRsc.r' 'phiWt.r' 'RRlsi.r' 'RRmh.r' 'RRmpWald.r' 'RRor.r' 'RRotsst.r' 'RRsc.r' 'RRStr.r' 'RRtosst.r' 'rsbWt.r' 'tauWt.r'
Packaged: 2012-08-14 22:20:44 UTC; mvendett
Repository: CRAN
Date/Publication: 2012-08-17 08:24:08

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New package pander with initial version 0.2
Package: pander
Maintainer: Gergely Daróczi
Title: An R pandoc writer
Type: Package
Encoding: UTF-8
Description: Contains some functions catching all messages, stdout and other useful information while evaluating R code and other helpers to return user specified text elements (like: header, paragraph, table, image, lists etc.) in Pandoc's markdown or several type of R objects similarly automatically transformed to markdown format. Also capable of exporting/converting (the resulting) complex Pandoc documents to e.g. HTML, pdf, docx or odt. This latter reporting feature is supported in brew syntax or with a custom reference class with a smarty caching backend.
Author: Gergely Daróczi
Version: 0.2
Date: 2012-08-15
URL: https://github.com/rapporter/pander
BugReports: https://github.com/rapporter/pander/issues
License: AGPL-3
Depends: R (>= 2.15.0)
Imports: methods, digest
Suggests: grid, lattice, ggplot2
SystemRequirements: Pandoc (http://johnmacfarlane.net/pandoc) for exporting markdown files to other formats.
Collate: 'helpers.R' 'S3.R' 'R5.R' 'brew.R' 'convert.R' 'evals.R' 'ess-functions.R' 'options.R' 'graph.R'
Packaged: 2012-08-16 15:46:49 UTC; omleny
Repository: CRAN
Date/Publication: 2012-08-17 08:19:40

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New package fechner with initial version 1.0-2
Package: fechner
Type: Package
Title: Fechnerian Scaling of Discrete Object Sets
Version: 1.0-2
Date: 2012-08-16
Authors@R: c(person("Ali", "Uenlue", email = "ali.uenlue@tum.de", role = c("aut", "cre")), person("Thomas", "Kiefer", email = "t.kiefer@bifie.at", role = c("aut", "trl"), comment = "Based on original MATLAB source by Ehtibar N. Dzhafarov."))
Description: Functions and example datasets for Fechnerian scaling of discrete object sets. It computes Fechnerian distances among objects representing subjective dissimilarities, and other related information. See package?fechner for an overview.
Depends: R (>= 2.15.1), base, graphics, stats
Imports: base, graphics, stats
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
Packaged: 2012-08-17 00:15:39 UTC; root
Author: Ali Uenlue [aut, cre], Thomas Kiefer [aut, trl] (Based on original MATLAB source by Ehtibar N. Dzhafarov.)
Maintainer: Ali Uenlue
Repository: CRAN
Date/Publication: 2012-08-17 08:32:09

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Package rindex updated to version 0.11 with previous version 0.10 dated 2009-10-11

Title: Indexing for R
Description: Index structures allow quickly accessing elements from large collections. While btree are optimized for disk databases and ttree for ram databases we use hybrid static indexing which is quite optimal for R.
Author: Jens Oehlschlägel
Maintainer: Jens Oehlschlägel

Diff between rindex versions 0.10 dated 2009-10-11 and 0.11 dated 2012-08-17

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Package RGtk2 updated to version 2.20.24.1 with previous version 2.20.24 dated 2012-05-10

Title: R bindings for Gtk 2.8.0 and above
Description: Facilities in the R language for programming graphical interfaces using Gtk, the Gimp Tool Kit.
Author: Michael Lawrence and Duncan Temple Lang
Maintainer: Michael Lawrence

Diff between RGtk2 versions 2.20.24 dated 2012-05-10 and 2.20.24.1 dated 2012-08-17

 DESCRIPTION         |    6 +++---
 MD5                 |    4 ++--
 src/RGtk2/gobject.h |    1 +
 3 files changed, 6 insertions(+), 5 deletions(-)

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Package RGraphics updated to version 2.0-3 with previous version 2.0-0 dated 2011-05-16

Title: Data and Functions from the book R Graphics, Second Edition
Description: Data and Functions from the book R Graphics, Second Edition. There is a function to produce each figure in the book, plus several functions, classes, and methods defined in Chapter 8.
Author: Paul Murrell
Maintainer: Paul Murrell

Diff between RGraphics versions 2.0-0 dated 2011-05-16 and 2.0-3 dated 2012-08-17

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Package regtest updated to version 0.05 with previous version 0.04 dated 2009-01-29

Title: Regression testing
Description: Functions for unary and binary regression tests
Author: Jens Oehlschlägel
Maintainer: Jens Oehlschlägel

Diff between regtest versions 0.04 dated 2009-01-29 and 0.05 dated 2012-08-17

 DESCRIPTION  |   26 ++++++++++++++------------
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 NAMESPACE    |only
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 6 files changed, 30 insertions(+), 33 deletions(-)

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