Title: Data driven smooth test
Diff between ddst versions 1.02 dated 2010-07-30 and 1.03 dated 2012-08-19
Description: Support for data driven testing
Author: Przemyslaw Biecek (R code), Teresa Ledwina (support,
descriptions)
Maintainer: Przemyslaw Biecek
DESCRIPTION | 6 +++---
MD5 |only
R/ddst.exp.Nk.R | 2 +-
R/ddst.exp.test.R | 4 ++--
R/ddst.extr.Nk.R | 6 +++---
R/ddst.extr.test.R | 8 ++++----
R/ddst.norm.Nk.R | 6 +++---
R/ddst.norm.test.R | 8 ++++----
R/ddst.phi.R | 2 +-
R/ddst.uniform.test.R | 2 +-
man/ddst-package.Rd | 2 +-
11 files changed, 23 insertions(+), 23 deletions(-)
Title: Unconditional Exact Tests
Diff between Exact versions 1.0 dated 2012-03-22 and 1.1 dated 2012-08-19
Description: Unconditional exact test for 2x2 contingency tables
Author: Peter Calhoun
Maintainer: Peter Calhoun
DESCRIPTION | 13 +++++------
MD5 | 12 +++++-----
NAMESPACE | 4 +--
R/exact.test.R | 55 +++++++++++++++++++++++-------------------------
man/Exact-package.Rd | 49 +++++++++++++++++++++---------------------
man/exact.test.Rd | 48 ++++++++++++++++++++---------------------
man/power.exact.test.Rd | 38 +++++++++++++++++----------------
7 files changed, 109 insertions(+), 110 deletions(-)
Title: Empirical Research in Economics with R
Diff between erer versions 1.1 dated 2012-03-30 and 1.2 dated 2012-08-19
Description: This package contains functions and datasets for the book
of 'Empirical Research in Economics: Growing up with R' by Dr.
Changyou Sun. These functions can calculate marginal effects
for a binary probit or logit model, estimate static and dynamic
Almost Ideal Demand System (AIDS) models, and conduct event
analysis.
Author: Changyou Sun
Maintainer: Changyou Sun
DESCRIPTION | 10 +++++-----
MD5 | 12 +++++++-----
R/bsLag.R | 31 ++++++++++++++++++-------------
R/head.ts.r |only
inst/doc/erer-manual.pdf |binary
man/bsLag.Rd | 21 +++++++++++++++------
man/erer-package.Rd | 8 ++++----
man/head.ts.Rd |only
8 files changed, 49 insertions(+), 33 deletions(-)
Title: Analysis of Parent-Specific DNA Copy Numbers
Diff between PSCBS versions 0.23.0 dated 2012-03-21 and 0.28.1 dated 2012-08-19
Description: Segments allele-specific DNA copy number data to detect
regions with abnormal copy number within each parental
chromosome
Author: A.B. Olshen, H. Bengtsson, P. Neuvial, P.T. Spellman, R.A.
Olshen, V.E. Seshan
Maintainer: Henrik Bengtsson
PSCBS-0.23.0/PSCBS/R/PSCBS.EXTS.R |only
PSCBS-0.23.0/PSCBS/R/PairedPSCBS.REPORT.R |only
PSCBS-0.23.0/PSCBS/R/PairedPSCBS.callCN.R |only
PSCBS-0.23.0/PSCBS/incl/segmentByPairedPSCBS,report.Rex |only
PSCBS-0.23.0/PSCBS/man/callCN.PairedPSCBS.Rd |only
PSCBS-0.23.0/PSCBS/man/report.PairedPSCBS.Rd |only
PSCBS-0.28.1/PSCBS/DESCRIPTION | 19
PSCBS-0.28.1/PSCBS/MD5 | 90 -
PSCBS-0.28.1/PSCBS/R/AbstractCBS.HCLUST.R | 5
PSCBS-0.28.1/PSCBS/R/AbstractCBS.R | 29
PSCBS-0.28.1/PSCBS/R/AbstractCBS.REPORT.R |only
PSCBS-0.28.1/PSCBS/R/CBS.EXTS.R | 25
PSCBS-0.28.1/PSCBS/R/CBS.R | 20
PSCBS-0.28.1/PSCBS/R/CNA.EXTS.R | 2
PSCBS-0.28.1/PSCBS/R/DNAcopy.EXTS.R | 28
PSCBS-0.28.1/PSCBS/R/NonPairedPSCBS.R |only
PSCBS-0.28.1/PSCBS/R/PSCBS.R |only
PSCBS-0.28.1/PSCBS/R/PairedPSCBS.EXTS.R | 2
PSCBS-0.28.1/PSCBS/R/PairedPSCBS.R | 18
PSCBS-0.28.1/PSCBS/R/PairedPSCBS.callCopyNeutral.R |only
PSCBS-0.28.1/PSCBS/R/PairedPSCBS.callLOH.R | 21
PSCBS-0.28.1/PSCBS/R/PairedPSCBS.callROH.R | 13
PSCBS-0.28.1/PSCBS/R/gapsToSegments.R | 10
PSCBS-0.28.1/PSCBS/R/segmentByCBS.R | 13
PSCBS-0.28.1/PSCBS/R/segmentByNonPairedPSCBS.R |only
PSCBS-0.28.1/PSCBS/R/segmentByPairedPSCBS.R | 598 ++++++----
PSCBS-0.28.1/PSCBS/R/testROH.R | 8
PSCBS-0.28.1/PSCBS/R/weightedQuantile.R | 2
PSCBS-0.28.1/PSCBS/incl/999.missingdocs.txt | 13
PSCBS-0.28.1/PSCBS/incl/segmentByNonPairedPSCBS.Rex |only
PSCBS-0.28.1/PSCBS/inst/NEWS | 99 +
PSCBS-0.28.1/PSCBS/inst/doc/CBS.tex.rsp |only
PSCBS-0.28.1/PSCBS/inst/doc/PairedPSCBS.pdf |binary
PSCBS-0.28.1/PSCBS/inst/doc/PairedPSCBS.tex.rsp | 126 +-
PSCBS-0.28.1/PSCBS/inst/templates/rsp/CBSReport.tex.rsp |only
PSCBS-0.28.1/PSCBS/inst/templates/rsp/PSCBS.bib | 81 +
PSCBS-0.28.1/PSCBS/inst/templates/rsp/PairedPSCBSReport.tex.rsp | 19
PSCBS-0.28.1/PSCBS/man/AbstractCBS.Rd | 2
PSCBS-0.28.1/PSCBS/man/CBS.Rd | 2
PSCBS-0.28.1/PSCBS/man/Non-documented_objects.Rd | 12
PSCBS-0.28.1/PSCBS/man/NonPairedPSCBS.Rd |only
PSCBS-0.28.1/PSCBS/man/PSCBS-package.Rd | 9
PSCBS-0.28.1/PSCBS/man/PSCBS.Rd | 7
PSCBS-0.28.1/PSCBS/man/PairedPSCBS.Rd | 10
PSCBS-0.28.1/PSCBS/man/callCopyNeutral.PairedPSCBS.Rd |only
PSCBS-0.28.1/PSCBS/man/callCopyNeutralByTCNofAB.PairedPSCBS.Rd | 13
PSCBS-0.28.1/PSCBS/man/gapsToSegments.data.frame.Rd | 4
PSCBS-0.28.1/PSCBS/man/getSegments.PSCBS.Rd | 2
PSCBS-0.28.1/PSCBS/man/pruneByHClust.AbstractCBS.Rd | 2
PSCBS-0.28.1/PSCBS/man/report.AbstractCBS.Rd |only
PSCBS-0.28.1/PSCBS/man/segmentByNonPairedPSCBS.Rd |only
PSCBS-0.28.1/PSCBS/man/segmentByPairedPSCBS.Rd | 2
PSCBS-0.28.1/PSCBS/man/updateMeans.AbstractCBS.Rd |only
PSCBS-0.28.1/PSCBS/man/updateMeansTogether.AbstractCBS.Rd | 3
PSCBS-0.28.1/PSCBS/tests/segmentByCBS,report.R |only
PSCBS-0.28.1/PSCBS/tests/segmentByPairedPSCBS,knownSegments.R | 8
56 files changed, 923 insertions(+), 394 deletions(-)
Title: Data and functions for the book Modern Statistical Graphics
Diff between MSG versions 0.2 dated 2012-03-01 and 0.2.2 dated 2012-08-19
Description: A companion to the Chinese book ``Modern Statistical
Graphics'' by Yihui Xie.
Author: Yihui Xie
Maintainer: Yihui Xie
MSG-0.2.2/MSG/DESCRIPTION | 11
MSG-0.2.2/MSG/MD5 | 58 +-
MSG-0.2.2/MSG/NAMESPACE | 4
MSG-0.2.2/MSG/NEWS |only
MSG-0.2.2/MSG/R/MSG-package.R | 819 ++++++++++++++++++-------------------
MSG-0.2.2/MSG/R/andrews_curve.R | 62 +-
MSG-0.2.2/MSG/R/char_gen.R | 32 -
MSG-0.2.2/MSG/R/color.R | 73 +--
MSG-0.2.2/MSG/R/cut_plot.R | 45 --
MSG-0.2.2/MSG/R/heart_curve.R | 46 --
MSG-0.2.2/MSG/demo/ChinaPop.R | 2
MSG-0.2.2/MSG/demo/Napoleon.R | 89 +---
MSG-0.2.2/MSG/demo/cdplotDemo.R | 2
MSG-0.2.2/MSG/demo/contourPop.R | 11
MSG-0.2.2/MSG/demo/eqMaps.R | 2
MSG-0.2.2/MSG/demo/float_pie.R | 4
MSG-0.2.2/MSG/demo/hist_geyser.R | 2
MSG-0.2.2/MSG/demo/mouse_move.R | 2
MSG-0.2.2/MSG/man/BinormCircle.Rd | 25 -
MSG-0.2.2/MSG/man/ChinaLifeEdu.Rd | 20
MSG-0.2.2/MSG/man/Export.USCN.Rd | 16
MSG-0.2.2/MSG/man/PlantCounts.Rd | 15
MSG-0.2.2/MSG/man/andrews_curve.Rd | 13
MSG-0.2.2/MSG/man/canabalt.Rd | 4
MSG-0.2.2/MSG/man/gov.cn.pct.Rd | 44 -
MSG-0.2.2/MSG/man/quake6.Rd | 4
MSG-0.2.2/MSG/man/t.diff.Rd | 6
MSG-0.2.2/MSG/man/tukeyCount.Rd | 41 -
MSG-0.2.2/MSG/man/tvearn.Rd | 6
MSG-0.2.2/MSG/man/vec2col.Rd | 10
MSG-0.2/MSG/inst/NEWS |only
31 files changed, 696 insertions(+), 772 deletions(-)
Title: Foraminifera and Community Ecology Analyses
Diff between forams versions 1.1 dated 2011-09-14 and 2.0 dated 2012-08-19
Description: SHE, FORAM Index and ABC Method analyses and custom plot
functions for community data.
Author: Rodrigo Aluizio
Maintainer: Rodrigo Aluizio
forams-1.1/forams/R/abc.R |only
forams-1.1/forams/R/abc.plot.R |only
forams-1.1/forams/R/fi.R |only
forams-1.1/forams/R/fi.plot.R |only
forams-1.1/forams/R/she.R |only
forams-1.1/forams/R/she.plot.R |only
forams-1.1/forams/data/Factors.rda |only
forams-1.1/forams/data/LF.rda |only
forams-1.1/forams/data/NB.rda |only
forams-2.0/forams/CHANGELOG |only
forams-2.0/forams/DESCRIPTION | 11 +---
forams-2.0/forams/MD5 | 42 +++++++++------
forams-2.0/forams/NAMESPACE | 10 +++
forams-2.0/forams/R/Classes.r |only
forams-2.0/forams/R/abc.r |only
forams-2.0/forams/R/fi.r |only
forams-2.0/forams/R/plot.abc.r |only
forams-2.0/forams/R/plot.fi.r |only
forams-2.0/forams/R/plot.she.r |only
forams-2.0/forams/R/she.r |only
forams-2.0/forams/data/Factors.RData |only
forams-2.0/forams/data/LF.RData |only
forams-2.0/forams/data/NB.RData |only
forams-2.0/forams/man/Factors.Rd | 2
forams-2.0/forams/man/LF.Rd | 2
forams-2.0/forams/man/NB.Rd | 2
forams-2.0/forams/man/abc-class.Rd |only
forams-2.0/forams/man/abc.Rd | 85 ++++++--------------------------
forams-2.0/forams/man/fi-class.Rd |only
forams-2.0/forams/man/fi.Rd | 70 +++-----------------------
forams-2.0/forams/man/forams-package.Rd | 27 +++++-----
forams-2.0/forams/man/plot-methods.Rd |only
forams-2.0/forams/man/she-class.Rd |only
forams-2.0/forams/man/she.Rd | 57 ++-------------------
34 files changed, 88 insertions(+), 220 deletions(-)