Tue, 21 Aug 2012

Package rapport updated to version 0.40 with previous version 0.31 dated 2012-02-08

Title: A report templating system
Description: A package that facilitates creation of reproducible statistical report templates. Once created, rapport templates can be exported to various external formats (HTML, LaTeX, PDF, ODT etc.) with Pandoc as the converter backend.
Author: Aleksandar Blagotić and Gergely Daróczi
Maintainer: Gergely Daróczi

Diff between rapport versions 0.31 dated 2012-02-08 and 0.40 dated 2012-08-21

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More information about rapport at CRAN
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Package pomp updated to version 0.43-4 with previous version 0.43-1 dated 2012-07-03

Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner, Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael Lavine, Daniel C. Reuman
Maintainer: Aaron A. King

Diff between pomp versions 0.43-1 dated 2012-07-03 and 0.43-4 dated 2012-08-21

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New package pacbpred with initial version 0.9
Package: pacbpred
Type: Package
Title: PAC-Bayesian Estimation and Prediction in Sparse Additive Models.
Version: 0.9
Date: 2012-08-19
Author: Benjamin Guedj
Maintainer: Benjamin Guedj
Description: This package is intended to perform estimation and prediction in high-dimensional additive models, using a sparse PAC-Bayesian point of view and a MCMC algorithm. The method is fully described in Guedj and Alquier (2012), 'PAC-Bayesian Estimation and Prediction in Sparse Additive Models'.
License: GPL
URL: http://www.lsta.upmc.fr/doct/guedj/index.html
Packaged: 2012-08-21 15:23:52 UTC; root
Repository: CRAN
Date/Publication: 2012-08-21 17:22:22

More information about pacbpred at CRAN
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Package flashClust updated to version 1.01-2 with previous version 1.01-1 dated 2012-03-03

Title: Implementation of optimal hierarchical clustering
Description: Fast implementation of hierarchical clustering
Author: code by Fionn Murtagh and R development team, modifications and packaging by Peter Langfelder
Maintainer: Peter Langfelder

Diff between flashClust versions 1.01-1 dated 2012-03-03 and 1.01-2 dated 2012-08-21

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Package BMA updated to version 3.15.2 with previous version 3.15.1 dated 2012-04-27

Title: Bayesian Model Averaging
Description: Package for Bayesian model averaging for linear models, generalizable linear models and survival models (cox regression).
Author: Adrian Raftery , Jennifer Hoeting, Chris Volinsky, Ian Painter, Ka Yee Yeung
Maintainer: Chris Fraley (interim)

Diff between BMA versions 3.15.1 dated 2012-04-27 and 3.15.2 dated 2012-08-21

 CHANGELOG   |    4 ++++
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Package plotKML updated to version 0.2-4 with previous version 0.2-2 dated 2012-06-20

Title: Visualization of spatial and spatio-temporal objects in Google Earth
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules. Suitable for visualization of complete analysis outputs.
Author: Tomislav Hengl , Contributions by: Pierre Roudier , Dylan Beaudette , Daniel Nuest
Maintainer: Tomislav Hengl

Diff between plotKML versions 0.2-2 dated 2012-06-20 and 0.2-4 dated 2012-08-21

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Package MatrixEQTL updated to version 1.6.2 with previous version 1.6.1 dated 2012-05-25

Title: Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
Description: Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for association between genotype and gene expression using linear regression with either additive or ANOVA genotype effects. The models can include covariates to account for factors as population stratification, gender, and clinical variables. It also supports models with heteroscedastic and/or correlated errors, false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs.
Author: Andrey Shabalin
Maintainer: Andrey Shabalin

Diff between MatrixEQTL versions 1.6.1 dated 2012-05-25 and 1.6.2 dated 2012-08-21

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 NAMESPACE                 |    8 +-
 R/Matrix_eQTL_engine.R    |  142 ++++++++++++++++++++++++++++++++++++----------
 man/MatrixEQTL-package.Rd |    2 
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 man/plot.MatrixEQTL.Rd    |    5 +
 8 files changed, 145 insertions(+), 67 deletions(-)

More information about MatrixEQTL at CRAN
Permanent link

Package DiceKriging updated to version 1.4.0 with previous version 1.3.3 dated 2012-06-01

Title: Kriging methods for computer experiments
Description: Estimation, validation and prediction of kriging models. Important functions : km, print.km, plot.km, predict.km.
Author: Olivier Roustant, David Ginsbourger, Yves Deville. Contributor: Clement Chevalier.
Maintainer: Olivier Roustant

Diff between DiceKriging versions 1.3.3 dated 2012-06-01 and 1.4.0 dated 2012-08-21

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Package robfilter updated to version 3.2 with previous version 3.1 dated 2012-04-18

Title: Robust Time Series Filters
Description: A set of functions to filter time series based on concepts from robust statistics.
Author: Roland Fried , Karen Schettlinger and Matthias Borowski
Maintainer: Roland Fried

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Package labstatR updated to version 1.0.7 with previous version 1.0.6 dated 2011-10-23

Title: Libreria del Laboratorio di Statistica con R
Description: Insieme di funzioni di supporto al volume "Laboratorio di Statistica con R", Iacus-Masarotto, MacGraw-Hill Italia, 2006. This package contains sets of functions defined in "Laboratorio di Statistica con R", Iacus-Masarotto, MacGraw-Hill Italia, 2006. Function names and docs are in italian as well.
Author: Stefano M.Iacus and Guido Masarotto
Maintainer: Stefano M.Iacus

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New package BigTSP with initial version 1.0
Package: BigTSP
Type: Package
Title: Top Scoring Pair based methods for classification
Version: 1.0
Date: 2012-08-20
Author: Xiaolin Yang,Han Liu
Maintainer: Xiaolin Yang
Description: This package is trying to implement Top Scoring Pair based methods for classification including LDCA, TSP-tree, TSP-random forest and TSP gradient boosting algorithm.
Depends: glmnet,tree,randomForest,gbm
License: GPL (>= 2)
Packaged: 2012-08-21 03:17:15 UTC; xiaolinyang
Repository: CRAN
Date/Publication: 2012-08-21 06:34:06

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Package fptdApprox (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-10-05 1.1
2010-04-09 1.0

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Package OptionsPdf (with last version 0.9) was removed from CRAN

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2012-02-04 0.9

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Package plsRcox (with last version 0.7.0) was removed from CRAN

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2012-03-30 0.7.0

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Package qAnalyst (with last version 0.6.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-01-14 0.6.4
2010-02-12 0.6.3
2010-02-05 0.6.2
2010-01-27 0.6.1
2009-08-23 0.6.0
2009-07-18 0.5.5
2008-06-13 0.5.4
2008-06-03 0.5.3
2008-05-07 0.5.2
2008-02-19 0.5.1
2008-01-10 0.1

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Package plsRglm (with last version 0.7.6) was removed from CRAN

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2011-11-23 0.7.6
2011-04-11 0.7.4
2011-04-06 0.7.2
2011-03-29 0.7.0
2011-01-15 0.6.5
2011-01-09 0.6.3
2010-12-09 0.5.0
2010-10-05 0.3.3
2010-09-20 0.3.2

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Package plsRbeta (with last version 0.1.1) was removed from CRAN

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2011-11-30 0.1.1

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Package R.utils updated to version 1.16.0 with previous version 1.12.1 dated 2012-03-23

Title: Various programming utilities
Description: This package provides utility classes and methods useful when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson

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Package mvabund updated to version 3.0.2 with previous version 2.3-4.1 dated 2012-03-30

Title: statistical methods for analysing multivariate abundance data
Description: A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See mvabund-package.Rd for details of overall package organization. The package is implemented with the Gnu Scientific Library (http://www.gnu.org/software/gsl/) and Rcpp (http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright and David Warton
Maintainer: Yi Wang

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Package monmlp updated to version 1.1.1 with previous version 1.1 dated 2011-05-05

Title: Monotone multi-layer perceptron neural network
Description: Multi-layer perceptron neural network with partial monotonicity constraints
Author: Alex J. Cannon
Maintainer: Alex J. Cannon

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Package Momocs updated to version 0.1-02 with previous version 0.1-01 dated 2012-05-02

Title: Shape Analysis of Outlines
Description: Momocs is intended to ease and popularize shape analysis of outlines (especially using elliptical Fourier analysis). It mostly hinges on the functions developed in Morphometrics with R (Claude, 2008). From outline extraction of images and elliptical Fourier calculation to multivariate analysis and the visualization of transformations within the morphological space, Momocs provides a complete and convenient toolkit to specialists within every field that are, or may be, interested in morphological comparisons of outlines.
Author: Vincent Bonhomme, Sandrine Picq, Julien Claude
Maintainer: Vincent Bonhomme

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Package iGasso updated to version 1.1 with previous version 1.0 dated 2012-01-07

Title: Genetic association tests and utilities
Description: A collection of statistical tests and utilities for genetic association studies
Author: Dr. Kai Wang
Maintainer: Kai Wang

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Package EBMAforecast updated to version 0.4 with previous version 0.3 dated 2012-06-14

Title: Ensemble BMA Forecasting
Description: Ensemble BMA for social science data
Author: Jacob M. Montgomery, Florian Hollenbach, and Michael D. Ward
Maintainer: Jacob Montgomery

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Package boss updated to version 1.2 with previous version 1.1 dated 2012-05-17

Title: Boosted One-Step Statistics: Fast and accurate approximations for GLM, GEE and Mixed models for use in GWAS
Description: BOSS uses parameter estimates obtained without genotype to boost standard one-step approximations, and precomputes as much as possible without genotype (using boss.set) to minimize effort required.
Author: Arend Voorman
Maintainer: Arend Voorman

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Package Benchmarking updated to version 0.22 with previous version 0.21 dated 2012-08-15

Title: Benchmark and frontier analysis using DEA and SFA
Description: The package contains methods to support frontier analysis. It covers Data Envelopment Analysis (DEA). DEA is supported under different technology assumptions (fdh, vrs, drs, crs, irs, add/frh, and fdh+), and using different efficiency measures (input based, output based, hyperbolic graph, additive, super, and directional efficiency). Peers and slacks are available, partial price information can be included, and optimal cost, revenue and profit can be calculated. Evaluation of mergers is also supported. Methods for graphing the technology sets are also included. The package also support comparative methods based on Stochastic Frontier Analyses (SFA). In general, the methods can be used to solve not only standard models, but also many other model variants. The package complements the book, Bogetoft and Otto, Benchmarking with DEA, SFA, and R, Springer-Verlag, 2011, but can of course also be used as a stand-alone package.
Author: Peter Bogetoft and Lars Otto
Maintainer: Lars Otto

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Package AdMit updated to version 1-01.04 with previous version 1-01.03.1 dated 2011-02-18

Title: Adaptive Mixture of Student-t distributions
Description: This package provides functions to perform the fitting of an adaptive mixture of Student-t distributions to a target density through its kernel function. The mixture approximation can then be used as the importance density in importance sampling or as the candidate density in the Metropolis-Hastings algorithm to obtain quantities of interest for the target density itself.
Author: David Ardia, Lennart F. Hoogerheide and Herman K. van Dijk
Maintainer: David Ardia

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