Title: Geographically weighted regression
Diff between spgwr versions 0.6-14 dated 2012-04-03 and 0.6-17 dated 2012-08-22
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Author: Roger Bivand and Danlin Yu, contributions by Tomoki Nakaya,
tricube function based on a contribution by Miquel-Angel
Garcia-Lopez
Maintainer: Roger Bivand
ChangeLog | 289 ++++++++++++++++++++++++++++++++++++-----------------
DESCRIPTION | 12 +-
MD5 | 14 +-
NAMESPACE | 2
R/gwr.R | 26 +++-
R/gwr.whole.test.R | 13 +-
inst/ChangeLog | 289 ++++++++++++++++++++++++++++++++++++-----------------
man/gwr.Rd | 15 ++
8 files changed, 454 insertions(+), 206 deletions(-)
Title: Planning and Analyzing Dose Finding experiments
Diff between DoseFinding versions 0.6-2 dated 2012-04-04 and 0.6-3 dated 2012-08-22
Description: The DoseFinding package provides functions for the design
and analysis of dose-finding experiments (for example
pharmaceutical Phase II clinical trials). It provides functions
for: multiple contrast tests, fitting non-linear dose-response
models, calculating optimal designs and an implementation of
the MCPMod methodology.
Author: Bjoern Bornkamp, Jose Pinheiro, Frank Bretz
Maintainer: Bjoern Bornkamp
ChangeLog | 3 +++
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
R/RADFBayes.R | 6 +++---
R/optDesign.R | 2 +-
man/DoseFinding-package.Rd | 4 ++--
tests/testsDesign.R | 29 ++++++++++-------------------
7 files changed, 29 insertions(+), 35 deletions(-)
Title: The ACER Method for Extreme Value Estimation
Diff between acer versions 0.1 dated 2011-12-16 and 0.1.2 dated 2012-08-22
Description: Implementation of the ACER method for estimating return
levels of extreme values.
Author: Even Haug [aut, cre]
Maintainer: Even Haug
acer-0.1.2/acer/DESCRIPTION | 16 +++++++++-------
acer-0.1.2/acer/MD5 | 5 ++---
acer-0.1.2/acer/inst/doc/acer.pdf |binary
acer-0.1/acer/Makefile.am |only
4 files changed, 11 insertions(+), 10 deletions(-)
Title: Sample size calculation for various t-Tests and Wilcoxon-Test
Diff between samplesize versions 0.1-7 dated 2010-03-19 and 0.1-8 dated 2012-08-22
Description: Computes sample size for Student's t-test and for the
Wilcoxon-Mann-Whitney test for categorical data. The t-test
function allows paired and unpaired (balanced / unbalanced)
designs as well as homogeneous and heterogeneous variances. The
Wilcoxon function allows for ties.
Author: Ralph Scherer
Maintainer: Ralph Scherer
samplesize-0.1-7/samplesize/R/n.indep.t.test.eq.R |only
samplesize-0.1-7/samplesize/R/n.indep.t.test.neq.R |only
samplesize-0.1-7/samplesize/R/n.paired.t.test.R |only
samplesize-0.1-7/samplesize/R/n.welch.test.R |only
samplesize-0.1-7/samplesize/man/n.indep.t.test.eq.Rd |only
samplesize-0.1-7/samplesize/man/n.indep.t.test.neq.Rd |only
samplesize-0.1-7/samplesize/man/n.paired.t.test.Rd |only
samplesize-0.1-7/samplesize/man/n.welch.test.Rd |only
samplesize-0.1-7/samplesize/man/samplesize-package.Rd |only
samplesize-0.1-8/samplesize/DESCRIPTION | 21 +-
samplesize-0.1-8/samplesize/MD5 |only
samplesize-0.1-8/samplesize/NAMESPACE |only
samplesize-0.1-8/samplesize/R/n.ttest.R |only
samplesize-0.1-8/samplesize/R/n.wilcox.ord.R | 127 +++++++++---------
samplesize-0.1-8/samplesize/man/n.ttest.Rd |only
samplesize-0.1-8/samplesize/man/n.wilcox.ord.Rd | 14 +
16 files changed, 83 insertions(+), 79 deletions(-)
Title: Distributed Lag Non-linear Models
Diff between dlnm versions 1.6.3 dated 2012-06-19 and 1.6.4 dated 2012-08-22
Description: The package dlnm contains functions to specify and run
distributed lag linear and non-linear models.
Author: Antonio Gasparrini and Ben Armstrong
Maintainer: Antonio Gasparrini
DESCRIPTION | 10 +++++-----
MD5 | 9 +++++----
inst/CITATION | 10 +++++-----
inst/ChangeLog | 10 ++++++++++
inst/desktop.ini |only
inst/doc/dlnmOverview.pdf |binary
6 files changed, 25 insertions(+), 14 deletions(-)
Title: A bootstrap test for the probability of ruin in the classical
risk process
Diff between bootruin versions 1.1-254 dated 2011-10-20 and 1.1-579 dated 2012-08-22
Description: This package provides a framework for testing the
probability of ruin in the classical (compound Poisson) risk
process. It also includes some procedures for assessing and
comparing the performance between the bootstrap test and the
test using asymptotic normality.
Author: Benjamin Baumgartner
Maintainer: Benjamin Baumgartner
DESCRIPTION | 8 +--
MD5 | 6 +-
R/ruinprob.R | 117 +++++++++++++++++++++++++++------------------------------
src/rplimits.c | 45 ---------------------
4 files changed, 63 insertions(+), 113 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-10 0.20-6
2012-03-09 0.20-5
2011-11-02 0.20-0
2011-08-17 0.19-33
2011-07-31 0.19-31
2011-06-30 0.19-30
2011-04-24 0.19-26
2011-04-04 0.19-23
2011-01-05 0.19-17
2010-10-08 0.19-13
2010-09-03 0.19-11
2010-05-19 0.18-8
2010-04-25 0.18-5
2010-01-19 0.18-3
2010-01-17 0.18-1
2009-10-05 0.17-26
2009-05-15 0.17-25
2009-04-04 0.17-22
2009-01-06 0.17-20
2008-11-22 0.17-17
2008-09-18 0.17-15
2008-09-05 0.17-14
2008-08-06 0.17-13
2008-07-28 0.17-12
2008-06-24 0.17-10
2008-05-19 0.17-8
2008-05-03 0.17-7
2008-02-16 0.17-6
2008-01-04 0.17-4
2007-10-27 0.17-2
2007-10-16 0.17-1
2007-09-08 0.16-5
2007-09-01 0.16-4
2007-08-13 0.16-3
2007-07-20 0.16-2
2007-07-07 0.16-1
2007-06-20 0.15-11
Title: statistical methods for analysing multivariate abundance data
Diff between mvabund versions 3.0.2 dated 2012-08-21 and 3.1 dated 2012-08-22
Description: A set of tools for displaying, modeling and analysing
multivariate abundance data in community ecology. See
mvabund-package.Rd for details of overall package organization.
The package is implemented with the Gnu Scientific Library
(http://www.gnu.org/software/gsl/) and Rcpp
(http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright and David Warton
Maintainer: Yi Wang
mvabund-3.0.2/mvabund/R/covratio.manylm.R |only
mvabund-3.0.2/mvabund/R/dfbeta.manylm.R |only
mvabund-3.0.2/mvabund/R/dfbetas.manylm.R |only
mvabund-3.0.2/mvabund/R/dffits.manylm.R |only
mvabund-3.0.2/mvabund/R/hatvalues.manylm.R |only
mvabund-3.0.2/mvabund/R/manylm.influence.measures.R |only
mvabund-3.1/mvabund/DESCRIPTION | 8
mvabund-3.1/mvabund/MD5 | 27 +--
mvabund-3.1/mvabund/R/cooks.distance.manylm.R | 5
mvabund-3.1/mvabund/R/default.plot.manylm.R | 4
mvabund-3.1/mvabund/R/influence.manylm.R | 2
mvabund-3.1/mvabund/R/manylm.influence.R | 171 --------------------
mvabund-3.1/mvabund/R/rstandard.manylm.R | 15 -
mvabund-3.1/mvabund/R/rstudent.manylm.R | 10 -
mvabund-3.1/mvabund/src/diff.log |only
mvabund-3.1/mvabund/src/glm.cpp | 67 ++-----
mvabund-3.1/mvabund/src/glmtest.cpp | 11 -
mvabund-3.1/mvabund/src/resampTest.h | 3
18 files changed, 67 insertions(+), 256 deletions(-)
Title: Model selection and multimodel inference made easy
Diff between glmulti versions 1.0.4 dated 2012-02-22 and 1.0.6 dated 2012-08-22
Description: Automated model selection and model-averaging. Provides a
wrapper for glm and other functions, automatically generating
all possible models (under constraints set by the user) with
the specified response and explanatory variables, and finding
the best models in terms of some Information Criterion (AIC,
AICc or BIC). Can handle very large numbers of candidate
models. Features a Genetic Algorithm to find the best models
when an exhaustive screening of the candidates is not feasible.
Author: Vincent Calcagno
Maintainer: Vincent Calcagno
glmulti-1.0.4/glmulti/inst/doc/.build.timestamp |only
glmulti-1.0.6/glmulti/ChangeLog | 8 +++++++-
glmulti-1.0.6/glmulti/DESCRIPTION | 8 ++++----
glmulti-1.0.6/glmulti/MD5 | 8 ++++----
glmulti-1.0.6/glmulti/R/glmulti.r | 17 ++++++++++-------
glmulti-1.0.6/glmulti/inst/doc/glmulti.pdf |binary
6 files changed, 25 insertions(+), 16 deletions(-)
Title: Simultaneous inference for diversity indices.
Diff between simboot versions 0.1-65 dated 2012-08-03 and 0.1-66 dated 2012-08-22
Description: Package simboot provides estimation of simultaneous
bootstrap and asymptotic confidence intervals for diversity
indices, namely the Shannon and the Simpson index. Several
pre--specified multiple comparison types are available to
choose. Further user--defined contrast matrices are applicable.
In addition, simboot estimates adjusted as well as unadjusted
p--values for two of the three proposed bootstrap methods.
Further simboot allows for comparing biological diversities of
two or more groups while simultaneously testing a user-defined
selection of Hill numbers of orders q, which are considered as
appropriate and useful indices for measuring diversity.
Author: Ralph Scherer, Philip Pallmann
Maintainer: Ralph Scherer
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NAMESPACE | 22 +++++++++++-----------
NEWS | 12 ++++++++++--
R/mcpHill.R | 9 ++++++++-
man/Bacteria.Rd | 5 +++--
man/simboot.Rd | 4 ++--
7 files changed, 44 insertions(+), 28 deletions(-)
Title: Format a number to a string with SI prefix
Diff between sitools versions 1.3 dated 2012-02-19 and 1.4 dated 2012-08-22
Description: Format a number (or a list of numbers) to a string (or a
list of strings) with SI prefix. Use SI prefixes as constants
like (4 * milli)^2
Author: Jonas Stein, Ben Tupper
Maintainer: Jonas Stein
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/f2si.R | 38 +++++++++++++++++++++++---------------
man/sistring.Rd | 12 ++++++++----
man/sitools-package.Rd | 2 +-
5 files changed, 40 insertions(+), 28 deletions(-)
Title: Dynamic Time Warping algorithms
Diff between dtw versions 1.14-3 dated 2010-02-04 and 1.15 dated 2012-08-22
Description: A comprehensive implementation of Dynamic Time Warping
(DTW) algorithms in R. DTW computes the optimal (least
cumulative distance) alignment between points of two time
series. All common DTW variants are covered, including local
(slope) and global (window) constraints, distance definitions,
length normalizations, minimum variance matching, and so on.
Provides cumulative distances, alignments, several plot styles,
etc.
Author: Toni Giorgino
Maintainer: Toni Giorgino
dtw-1.14-3/dtw/inst/doc/jss.bst |only
dtw-1.14-3/dtw/inst/doc/jss.cls |only
dtw-1.15/dtw/DESCRIPTION | 25 +++---
dtw-1.15/dtw/MD5 |only
dtw-1.15/dtw/R/backtrack.R | 10 +-
dtw-1.15/dtw/R/dtw-internal.R | 12 +--
dtw-1.15/dtw/R/dtw.R | 10 +-
dtw-1.15/dtw/R/dtwDist.R | 8 +-
dtw-1.15/dtw/R/globalCostMatrix.R | 10 +-
dtw-1.15/dtw/R/mvm.R | 8 +-
dtw-1.15/dtw/R/plot.dtw.R | 10 +-
dtw-1.15/dtw/R/stepPattern.R | 10 +-
dtw-1.15/dtw/R/warp.R | 8 +-
dtw-1.15/dtw/R/warpArea.R | 8 +-
dtw-1.15/dtw/R/window.R | 10 +-
dtw-1.15/dtw/R/zzz.R | 17 ++--
dtw-1.15/dtw/data/aami3a.rda |binary
dtw-1.15/dtw/data/aami3b.rda |binary
dtw-1.15/dtw/inst/CITATION | 67 ++++++++---------
dtw-1.15/dtw/inst/ChangeLog | 10 +-
dtw-1.15/dtw/inst/doc/dtw.pdf |binary
dtw-1.15/dtw/man/dtw-package.Rd | 64 ++++++++++------
dtw-1.15/dtw/man/stepPattern.Rd | 26 +++---
dtw-1.15/dtw/src/Makevars | 23 +++--
dtw-1.15/dtw/src/computeCM.c | 133 ++++++++++++++++------------------
dtw-1.15/dtw/src/computeCM.h | 5 +
dtw-1.15/dtw/tests/dtw_test.Rout.save | 7 +
27 files changed, 256 insertions(+), 225 deletions(-)
Title: Variable Penalty Dynamic Time Warping
Diff between VPdtw versions 2.1-9 dated 2012-04-22 and 2.1-10 dated 2012-08-22
Description: Variable Penalty Dynamic Time Warping for aligning GC-MS
chromatograms to a master signal and more. With the appropriate
penalty this method performs good alignment without altering
the shape of peaks in GC-MS data.
Author: David Clifford, Glenn Stone
Maintainer: David Clifford
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/dilation.R | 6 ++++--
R/signalMatchABand.R | 13 +++++++------
4 files changed, 18 insertions(+), 15 deletions(-)
Title: Traveling Salesperson Problem (TSP)
Diff between TSP versions 1.0-6 dated 2011-11-29 and 1.0-7 dated 2012-08-22
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and an interface to
Concorde, the currently fastest TSP solver. Concorde itself is
not included in the package and has to be obtained separately.
Author: Michael Hahsler and Kurt Hornik
Maintainer: Michael Hahsler
TSP-1.0-6/TSP/inst/doc/jss.bst |only
TSP-1.0-6/TSP/inst/doc/jss.cls |only
TSP-1.0-7/TSP/CHANGES | 5 ++++-
TSP-1.0-7/TSP/DESCRIPTION | 18 +++++++++---------
TSP-1.0-7/TSP/MD5 | 24 +++++++++++-------------
TSP-1.0-7/TSP/R/tour_length.R | 4 ++--
TSP-1.0-7/TSP/R/tsp_concorde.R | 2 +-
TSP-1.0-7/TSP/R/tsp_insertion.R | 6 ++++--
TSP-1.0-7/TSP/R/tsp_two_opt.R | 4 ++--
TSP-1.0-7/TSP/R/write_TSPLIB.R | 8 ++++----
TSP-1.0-7/TSP/data/USCA312.rda |binary
TSP-1.0-7/TSP/data/USCA312_map.rda |binary
TSP-1.0-7/TSP/data/USCA50.rda |binary
TSP-1.0-7/TSP/inst/doc/TSP.pdf |binary
14 files changed, 37 insertions(+), 34 deletions(-)
Title: Functions and Datasets Required for ST370 class
Diff between Rlab versions 2.14.0 dated 2011-12-01 and 2.15.1 dated 2012-08-22
Description: Functions and Datasets Required for ST370 class
Author: Dennis D. Boos, Douglas Nychka
Maintainer: Dennis Boos
DESCRIPTION | 8 ++++----
MD5 | 36 ++++++++++++++++++------------------
R/dbern.R | 2 +-
R/dexp.R | 2 +-
R/dgamma.R | 2 +-
R/dweibull.R | 2 +-
R/pbern.R | 2 +-
R/pexp.R | 2 +-
R/pgamma.R | 2 +-
R/pweibull.R | 2 +-
R/qbern.R | 2 +-
R/qexp.R | 2 +-
R/qgamma.R | 2 +-
R/qweibull.R | 2 +-
R/rbern.R | 2 +-
R/rexp.R | 2 +-
R/rgamma.R | 2 +-
R/rweibull.R | 2 +-
R/zzz.R | 12 +++++++++---
19 files changed, 47 insertions(+), 41 deletions(-)
Title: Markov Chain Monte Carlo
Diff between mcmc versions 0.9 dated 2012-07-03 and 0.9-1 dated 2012-08-22
Description: functions for Markov chain Monte Carlo (MCMC).
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
ChangeLog | 3 +++
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
R/metrop.R | 2 +-
R/olbm.R | 2 +-
R/temper.R | 2 +-
inst/doc/bfst.pdf |binary
inst/doc/bfst.tex | 6 +++---
inst/doc/debug.pdf |binary
inst/doc/debug.tex | 2 +-
inst/doc/demo.pdf |binary
inst/doc/demo.tex | 16 ++++++++--------
inst/doc/morph.tex | 2 +-
13 files changed, 35 insertions(+), 32 deletions(-)
Title: A package to implement HMD model life table system
Diff between LifeTables versions 0.1 dated 2011-06-03 and 0.2 dated 2012-08-22
Description: Functions supplied in this package will implement
discriminant analysis to select an appropriate life table
family, select an appropriate alpha level based on a desired
life expectancy at birth, produce a model mortality pattern
based on family and level as well as plot the results.
Author: David J. Sharrow, GUI by Hana Sevcikova
Maintainer: David Sharrow
DESCRIPTION | 11 +++---
MD5 |only
NAMESPACE |only
R/gui.R | 76 +++++++++++++++++++++++-----------------------
R/hmd.DA.R | 10 +++---
R/hmd.DA.mx.R | 11 ++++--
data/MLTobs.RData |binary
man/LifeTables-package.Rd | 2 -
man/MLTobs.Rd | 2 -
man/hmd.DA.Rd | 8 ++--
man/hmd.DA.mx.Rd | 8 ++--
11 files changed, 67 insertions(+), 61 deletions(-)
Title: Tuning Insensitive Graph Estimation and Regression
Diff between bigmatrix versions 0.9.3 dated 2012-08-13 and 0.9.4 dated 2012-08-22
Description: The package "bigmatrix" targets at high dimensional
precision matrix estimation problem. We adopt two estimation
procedures based column by column scheme: (1) Tuning
Insensitive Graph Estimation and Regression (TIGER). (2) The
Constrained L1 minimization for sparse precision Matrix
Estimation (CLIME). Both TIGER and CLIME have better
performance than graphical lasso in parameter estimation under
the spectral norm. Moreover, TIGER is less sensitive to tuning
parameter than graphical lasso. The algorithm is implemented
based on Alternative Direction Method combined with coordinate
descent, which scales up to large problems. The computation is
memory-optimized using the sparse matrix output.
Author: Xingguo Li, Tuo Zhao, Lie Wang and Han Liu
Maintainer: Xingguo Li
bigmatrix-0.9.3/bigmatrix/R/tiger.clime.R |only
bigmatrix-0.9.3/bigmatrix/src/tiger_clime.c |only
bigmatrix-0.9.4/bigmatrix/DESCRIPTION | 32 +++++----
bigmatrix-0.9.4/bigmatrix/MD5 | 52 +++++++--------
bigmatrix-0.9.4/bigmatrix/NAMESPACE | 4 -
bigmatrix-0.9.4/bigmatrix/R/tiger.R | 38 +++++++----
bigmatrix-0.9.4/bigmatrix/R/tiger.clime.cdadm.R |only
bigmatrix-0.9.4/bigmatrix/R/tiger.clime.ladm.R |only
bigmatrix-0.9.4/bigmatrix/R/tiger.cv.R | 9 --
bigmatrix-0.9.4/bigmatrix/R/tiger.generator.R | 59 ++++++++++++++---
bigmatrix-0.9.4/bigmatrix/R/tiger.select.R | 9 +-
bigmatrix-0.9.4/bigmatrix/R/tiger.slasso.R | 18 +++--
bigmatrix-0.9.4/bigmatrix/man/bigmatrix-package.Rd | 13 ++-
bigmatrix-0.9.4/bigmatrix/man/plot.roc.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/plot.select.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/plot.sim.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/plot.tiger.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/print.roc.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/print.select.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/print.sim.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/print.tiger.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/tiger-internal.Rd | 11 ++-
bigmatrix-0.9.4/bigmatrix/man/tiger.Rd | 71 ++++++++++-----------
bigmatrix-0.9.4/bigmatrix/man/tiger.generator.Rd | 17 +++--
bigmatrix-0.9.4/bigmatrix/man/tiger.plot.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/tiger.roc.Rd | 2
bigmatrix-0.9.4/bigmatrix/man/tiger.select.Rd | 14 ++--
bigmatrix-0.9.4/bigmatrix/src/SFGen.c | 14 ++--
bigmatrix-0.9.4/bigmatrix/src/tiger_clime_cdadm.c |only
bigmatrix-0.9.4/bigmatrix/src/tiger_clime_ladm.c |only
30 files changed, 234 insertions(+), 147 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Diff between arules versions 1.0-8 dated 2012-04-23 and 1.0-9 dated 2012-08-22
Description: Provides the infrastructure for representing, manipulating
and analyzing transaction data and patterns (frequent itemsets
and association rules). Also provides interfaces to C
implementations of the association mining algorithms Apriori
and Eclat by C. Borgelt.
Author: Michael Hahsler, Christian Buchta, Bettina Gruen and Kurt
Hornik
Maintainer: Michael Hahsler
CHANGES | 12 +++++++-----
DESCRIPTION | 10 +++++-----
MD5 | 52 ++++++++++++++++++++++++++--------------------------
R/AllClasses.R | 2 +-
R/Matrix.R | 2 +-
R/categorize.R | 6 +++++-
R/crossTable.R | 3 ++-
R/is.closed.R | 2 +-
R/is.maximal.R | 3 ++-
R/is.superset.R | 9 ++++++---
R/itemCoding.R | 2 +-
R/itemFrequency.R | 2 +-
R/itemMatrix.R | 27 ++++++++++++++++-----------
R/ruleInduction.R | 7 ++++---
R/rules.R | 3 ++-
R/support.R | 8 +++++---
R/tidLists.R | 12 +++++++-----
data/Adult.rda |binary
data/AdultUCI.rda |binary
data/Epub.rda |binary
data/Groceries.rda |binary
data/Income.rda |binary
data/IncomeESL.rda |binary
inst/doc/arules.Rnw | 30 ++++++++++++++----------------
inst/doc/arules.pdf |binary
man/Adult.Rd | 22 +++++++++++-----------
man/categorize.Rd | 20 ++++++++++++++------
27 files changed, 131 insertions(+), 103 deletions(-)