Title: RcppEigen back end for sparse least trimmed squares regression
Diff between sparseLTSEigen versions 0.1.0 dated 2012-04-10 and 0.1.1 dated 2012-08-24
More information about sparseLTSEigen at CRAN
Description: Use RcppEigen to fit least trimmed squares regression
models with an L1 penalty in order to obtain sparse models.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons
sparseLTSEigen-0.1.0/sparseLTSEigen/.project |only
sparseLTSEigen-0.1.1/sparseLTSEigen/DESCRIPTION | 16 +-
sparseLTSEigen-0.1.1/sparseLTSEigen/MD5 | 13 +
sparseLTSEigen-0.1.1/sparseLTSEigen/NEWS |only
sparseLTSEigen-0.1.1/sparseLTSEigen/man/sparseLTSEigen-package.Rd | 34 +---
sparseLTSEigen-0.1.1/sparseLTSEigen/src/Makevars | 6
sparseLTSEigen-0.1.1/sparseLTSEigen/src/Makevars.win | 5
sparseLTSEigen-0.1.1/sparseLTSEigen/src/fastSparseLTS.cpp | 69 +++++-----
sparseLTSEigen-0.1.1/sparseLTSEigen/src/fastSparseLTS.h | 5
9 files changed, 80 insertions(+), 68 deletions(-)
Permanent link
Title: Robust methods for high-dimensional data
Diff between robustHD versions 0.1.0 dated 2012-04-10 and 0.2.0 dated 2012-08-24
Description: Robust methods for high-dimensional data, in particular
linear model selection techniques based on least angle
regression and sparse regression.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons
robustHD-0.1.0/robustHD/.project |only
robustHD-0.1.0/robustHD/.settings |only
robustHD-0.1.0/robustHD/R/cv.R |only
robustHD-0.1.0/robustHD/R/fitModels.R |only
robustHD-0.1.0/robustHD/R/repCV.R |only
robustHD-0.1.0/robustHD/inst/doc/examples/example-cvRlars.R |only
robustHD-0.1.0/robustHD/inst/doc/examples/example-cvSparseLTS.R |only
robustHD-0.1.0/robustHD/inst/doc/examples/example-repCV.rlars.R |only
robustHD-0.1.0/robustHD/inst/doc/examples/example-repCV.sparseLTS.R |only
robustHD-0.1.0/robustHD/inst/doc/examples/example-weights.sparseLTS.R |only
robustHD-0.1.0/robustHD/man/cvRlars.Rd |only
robustHD-0.1.0/robustHD/man/cvSparseLTS.Rd |only
robustHD-0.1.0/robustHD/man/repCV.seqModel.Rd |only
robustHD-0.1.0/robustHD/man/repCV.sparseLTS.Rd |only
robustHD-0.1.0/robustHD/man/weights.sparseLTS.Rd |only
robustHD-0.2.0/robustHD/DESCRIPTION | 29
robustHD-0.2.0/robustHD/MD5 | 121 -
robustHD-0.2.0/robustHD/NAMESPACE | 46
robustHD-0.2.0/robustHD/NEWS |only
robustHD-0.2.0/robustHD/R/AIC.R | 16
robustHD-0.2.0/robustHD/R/accessors.R |only
robustHD-0.2.0/robustHD/R/backend.R | 27
robustHD-0.2.0/robustHD/R/coef.R | 105
robustHD-0.2.0/robustHD/R/corHuber.R | 30
robustHD-0.2.0/robustHD/R/fastLasso.R | 7
robustHD-0.2.0/robustHD/R/fitted.R | 117 -
robustHD-0.2.0/robustHD/R/fortify.R |only
robustHD-0.2.0/robustHD/R/perry.R |only
robustHD-0.2.0/robustHD/R/plot.R | 1150 +++++-----
robustHD-0.2.0/robustHD/R/predict.R | 47
robustHD-0.2.0/robustHD/R/print.R | 65
robustHD-0.2.0/robustHD/R/residuals.R | 86
robustHD-0.2.0/robustHD/R/rlars.R | 182 -
robustHD-0.2.0/robustHD/R/seqModel.R |only
robustHD-0.2.0/robustHD/R/sparseLTS.R | 377 ++-
robustHD-0.2.0/robustHD/R/subset.R |only
robustHD-0.2.0/robustHD/R/test.R | 12
robustHD-0.2.0/robustHD/R/utils.R | 57
robustHD-0.2.0/robustHD/R/weights.R | 81
robustHD-0.2.0/robustHD/inst/doc/examples/example-fortify.R |only
robustHD-0.2.0/robustHD/inst/doc/examples/example-perry.rlars.R |only
robustHD-0.2.0/robustHD/inst/doc/examples/example-perry.sparseLTS.R |only
robustHD-0.2.0/robustHD/inst/doc/examples/example-rlars.R | 3
robustHD-0.2.0/robustHD/inst/doc/examples/example-sparseLTS.R | 3
robustHD-0.2.0/robustHD/inst/doc/examples/example-sparseLTSGrid.R | 3
robustHD-0.2.0/robustHD/inst/doc/examples/example-wt.sparseLTS.R |only
robustHD-0.2.0/robustHD/man/AIC.sparseLTS.Rd | 7
robustHD-0.2.0/robustHD/man/coef.seqModel.Rd | 19
robustHD-0.2.0/robustHD/man/coef.sparseLTS.Rd | 20
robustHD-0.2.0/robustHD/man/coefPlot.Rd | 38
robustHD-0.2.0/robustHD/man/critPlot.Rd | 26
robustHD-0.2.0/robustHD/man/diagnosticPlot.Rd | 71
robustHD-0.2.0/robustHD/man/fitted.seqModel.Rd | 17
robustHD-0.2.0/robustHD/man/fitted.sparseLTS.Rd | 18
robustHD-0.2.0/robustHD/man/fortify.sparseLTS.Rd |only
robustHD-0.2.0/robustHD/man/perry.seqModel.Rd |only
robustHD-0.2.0/robustHD/man/perry.sparseLTS.Rd |only
robustHD-0.2.0/robustHD/man/plot.seqModel.Rd | 13
robustHD-0.2.0/robustHD/man/predict.seqModel.Rd | 5
robustHD-0.2.0/robustHD/man/predict.sparseLTS.Rd | 6
robustHD-0.2.0/robustHD/man/residuals.seqModel.Rd | 17
robustHD-0.2.0/robustHD/man/residuals.sparseLTS.Rd | 19
robustHD-0.2.0/robustHD/man/rlars.Rd | 113
robustHD-0.2.0/robustHD/man/robustHD-package.Rd | 40
robustHD-0.2.0/robustHD/man/sparseLTS.Rd | 44
robustHD-0.2.0/robustHD/man/sparseLTSGrid.Rd | 184 +
robustHD-0.2.0/robustHD/man/wt.Rd |only
robustHD-0.2.0/robustHD/src/Makevars | 5
robustHD-0.2.0/robustHD/src/Makevars.win | 6
robustHD-0.2.0/robustHD/src/corHuber.h | 6
robustHD-0.2.0/robustHD/src/fastLasso.cpp | 23
robustHD-0.2.0/robustHD/src/fastLasso.h | 1
robustHD-0.2.0/robustHD/src/fastRlars.cpp |only
robustHD-0.2.0/robustHD/src/fastRlars.h |only
robustHD-0.2.0/robustHD/src/fastSparseLTS.cpp | 108
robustHD-0.2.0/robustHD/src/fastSparseLTS.h | 5
robustHD-0.2.0/robustHD/src/utils.cpp | 26
robustHD-0.2.0/robustHD/src/utils.h | 3
78 files changed, 1846 insertions(+), 1558 deletions(-)
Title: Indexing for R
Diff between rindex versions 0.11 dated 2012-08-17 and 0.12 dated 2012-08-24
Description: Index structures allow quickly accessing elements from
large collections. While btree are optimized for disk databases
and ttree for ram databases we use hybrid static indexing which
is quite optimal for R.
Author: Jens Oehlschlägel
Maintainer: Jens Oehlschlägel
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NEWS | 8 ++++++++
R/zzz.R | 5 +++--
4 files changed, 18 insertions(+), 9 deletions(-)
Title: Multivariate meta-analysis and meta-regression
Diff between mvmeta versions 0.3.0 dated 2012-08-01 and 0.3.1 dated 2012-08-24
Description: The package mvmeta consists of a collection of functions
to perform fixed and random-effects multivariate and univariate
meta-analysis and meta-regression in R.
Author: Antonio Gasparrini
Maintainer: Antonio Gasparrini
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NAMESPACE | 2 +-
R/internal.R | 2 +-
inst/ChangeLog | 10 ++++++++++
5 files changed, 20 insertions(+), 10 deletions(-)
Title: R Package for Causal Mediation Analysis
Diff between mediation versions 4.1 dated 2012-06-03 and 4.1.2 dated 2012-08-24
Description: mediation is a publicly available R package that allows
both parametric and nonparametric causal mediation analysis.
It implements the methods and suggestions in Imai, Keele, and
Yamamoto (2010) and Imai, Keele, Tingley (2010). In addition
to the estimation of causal mediation effects, the software
also allows researchers to conduct sensitivity analysis for
certain parametric models.
Author: Dustin Tingley
Maintainer: Teppei Yamamoto
mediation-4.1.2/mediation/ChangeLog | 2
mediation-4.1.2/mediation/DESCRIPTION | 16
mediation-4.1.2/mediation/MD5 | 12
mediation-4.1.2/mediation/R/mediate.R | 3217 +++++++++----------
mediation-4.1.2/mediation/inst/doc/mediation-old.pdf |binary
mediation-4.1.2/mediation/inst/doc/mediation.pdf |binary
mediation-4.1.2/mediation/man/mediate.Rd | 8
mediation-4.1/mediation/.Rapp.history |only
mediation-4.1/mediation/data/.Rapp.history |only
9 files changed, 1639 insertions(+), 1616 deletions(-)
Title: Parametric rate comparison
Diff between iteRates versions 1.0 dated 2011-06-24 and 2.0 dated 2012-08-24
Description: Iterates through a phylogenetic tree to identify regions
of rate variation using the parametric rate comparison test.
Author: Premal Shah, Benjamin Fitzpatrick, James Fordyce
Maintainer: James A. Fordyce
DESCRIPTION | 8 +++----
MD5 |only
NAMESPACE | 2 -
R/Null.comp.subs.ef.R |only
R/class.edge.all.R | 9 +++-----
R/color.tree.plot.R | 52 ++++++++++++++++++++++++++++++++++++-------------
R/comp.subs.DF.R |only
R/comp.subs.R | 20 +++++++-----------
R/model.sel.distbn.R | 4 +--
R/subtreez.R |only
R/tree.rand.test.R |only
R/treeSims.R |only
man/FP.comp.subs.Rd | 2 -
man/color.tree.plot.Rd | 12 ++++++++---
man/comp.fit.subs.Rd | 4 +--
man/comp.subs.Rd | 17 ++++++----------
man/id.subtrees.Rd | 3 --
man/tab.summary.Rd | 5 ----
man/tree.na.Count.Rd | 5 ----
man/tree.rand.test.Rd |only
man/trimTree.Rd | 8 -------
21 files changed, 80 insertions(+), 71 deletions(-)
Title: The package was developed to fit fit many growth curves obtained
under different conditions.
Diff between grofit versions 1.0 dated 2010-02-08 and 1.1 dated 2012-08-24
Description: The package was developed to fit fit many growth curves
obtained under different conditions in order to derive a
conclusive dose-response curve, for instance for a compound
that potentially affects growth. grofit fits data to different
parametric models (function gcFitModel) and in addition
provides a model free spline fit (function gcFitSpline) to
circumvent systematic errors that might occur within
application of parametric methods.
Author: Matthias Kahm, Maik Kschischo
Maintainer: Matthias Kahm
grofit-1.0/grofit/inst/doc |only
grofit-1.1/grofit/DESCRIPTION | 12 ++++++------
grofit-1.1/grofit/MD5 | 17 +++--------------
grofit-1.1/grofit/NAMESPACE |only
grofit-1.1/grofit/man/logistic.Rd | 4 ++--
5 files changed, 11 insertions(+), 22 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation
Diff between mgcv versions 1.7-19 dated 2012-07-20 and 1.7-20 dated 2012-08-24
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood
DESCRIPTION | 6 +-
MD5 | 18 ++++----
R/mgcv.r | 71 ++++++---------------------------
R/plots.r | 11 ++---
R/smooth.r | 19 ++------
changeLog | 20 +++++++++
man/Tweedie.Rd | 2
man/smooth.construct.ad.smooth.spec.Rd | 4 -
man/smooth.construct.cr.smooth.spec.Rd | 2
man/smooth.construct.ps.smooth.spec.Rd | 1
10 files changed, 65 insertions(+), 89 deletions(-)
Title: Renewal method for extreme values extrapolation
Diff between Renext versions 2.0-0 dated 2012-03-09 and 2.0-11 dated 2012-08-24
Description: R package dedicated to some Extreme values problems and
allowing the use of the so-called "renewal method" which is
popular among french-speaking hydrologists.
Author: Yves Deville
Maintainer: Lise Bardet
Renext-2.0-0/Renext/.BAKRbuilignore |only
Renext-2.0-11/Renext/ChangeLog | 17 +++++++++++++++--
Renext-2.0-11/Renext/DESCRIPTION | 10 +++++-----
Renext-2.0-11/Renext/MD5 | 22 +++++++++++-----------
Renext-2.0-11/Renext/R/Renouv.R | 1 -
Renext-2.0-11/Renext/R/readXML.R | 2 +-
Renext-2.0-11/Renext/data/Brest.rda |binary
Renext-2.0-11/Renext/data/Brest.years.missing.rda |binary
Renext-2.0-11/Renext/data/Brest.years.rda |binary
Renext-2.0-11/Renext/data/Dunkerque.rda |binary
Renext-2.0-11/Renext/data/Garonne.rda |binary
Renext-2.0-11/Renext/inst/doc/RenextGuide.pdf |binary
Renext-2.0-11/Renext/man/Renext-package.Rd | 6 +++---
13 files changed, 35 insertions(+), 23 deletions(-)
Title: Distance and Similarity Measures
Diff between proxy versions 0.4-7 dated 2011-07-29 and 0.4-8 dated 2012-08-24
Description: Provides an extensible framework for the efficient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Author: David Meyer and Christian Buchta
Maintainer: David Meyer
proxy-0.4-7/proxy/NEWS |only
proxy-0.4-7/proxy/inst/NEWS |only
proxy-0.4-8/proxy/DESCRIPTION | 10 ++--
proxy-0.4-8/proxy/MD5 |only
proxy-0.4-8/proxy/R/database.R | 1
proxy-0.4-8/proxy/R/dist.R | 8 ++-
proxy-0.4-8/proxy/inst/NEWS.Rd |only
proxy-0.4-8/proxy/inst/doc/overview.pdf |binary
proxy-0.4-8/proxy/tests/apply.Rout.save | 30 +++++-------
proxy-0.4-8/proxy/tests/distance.Rout.save | 43 ++++++++----------
proxy-0.4-8/proxy/tests/distcalls.Rout.save | 65 +++++++++++++---------------
proxy-0.4-8/proxy/tests/registry.Rout.save | 25 ++++------
proxy-0.4-8/proxy/tests/util.Rout.save | 47 +++++++++-----------
proxy-0.4-8/proxy/vignettes |only
14 files changed, 108 insertions(+), 121 deletions(-)
Title: MultiPhen, a package for the genetic association testing of
multiple phenotypes
Diff between MultiPhen versions 0.8 dated 2012-06-29 and 0.9 dated 2012-08-24
Description: Performs genetic association tests between SNPs
(one-at-a-time) and multiple phenotypes (separately or in joint
model)
Author: Lachlan Coin, Paul O'Reilly, Yotsawat Pompyen, Clive Hoggart
and Federico Calboli
Maintainer: Federico Calboli
MultiPhen-0.8/MultiPhen/data/.Rhistory |only
MultiPhen-0.9/MultiPhen/DESCRIPTION | 8 +-
MultiPhen-0.9/MultiPhen/MD5 | 6 -
MultiPhen-0.9/MultiPhen/R/MultiPhen-internal.R | 78 +++++++++++++----------
MultiPhen-0.9/MultiPhen/man/MultiPhen-package.Rd | 4 -
5 files changed, 54 insertions(+), 42 deletions(-)
Title: Particle Swarm Optimization
Diff between pso versions 1.0.1 dated 2011-01-10 and 1.0.2 dated 2012-08-24
Description: The package provides an implementation of PSO consistent
with the standard PSO 2007 by Maurice Clerc et al. Additionally
a number of ancillary routines are provided for easy testing
and graphics.
Author: Claus Bendtsen
Maintainer: Claus Bendtsen
DESCRIPTION | 8 ++---
MD5 |only
NAMESPACE |only
R/psoptim.R | 64 ++++++++++++++++++++++++++++++++++++++++------
man/pso-package.Rd | 4 +-
man/psoptim-methods.Rd | 11 +++----
man/psoptim.Rd | 49 ++++++++++++++++++++++++++++-------
man/test.problem-class.Rd | 3 +-
8 files changed, 110 insertions(+), 29 deletions(-)
Title: A package for Graphical Markov Models
Diff between ggm versions 1.99-5 dated 2012-06-19 and 1.995-0 dated 2012-08-24
Description: Functions for analyzing and fitting Graphical Markov
models
Author: Giovanni M. Marchetti, Mathias Drton, Kayvan Sadeghi
Maintainer: Giovanni M. Marchetti
ggm-1.99-5/ggm/vignettes |only
ggm-1.995-0/ggm/DESCRIPTION | 12 ++---
ggm-1.995-0/ggm/MD5 | 26 ++++++------
ggm-1.995-0/ggm/NAMESPACE | 6 +-
ggm-1.995-0/ggm/R/functions.R | 56 ++++++++++++---------------
ggm-1.995-0/ggm/R/kayvan.R | 13 ++----
ggm-1.995-0/ggm/data/anger.rda |binary
ggm-1.995-0/ggm/data/derived.rda |binary
ggm-1.995-0/ggm/data/glucose.rda |binary
ggm-1.995-0/ggm/data/marks.rda |binary
ggm-1.995-0/ggm/data/stress.rda |binary
ggm-1.995-0/ggm/data/surdata.rda |binary
ggm-1.995-0/ggm/inst |only
ggm-1.995-0/ggm/man/InducedGraphs.Rd | 8 +--
ggm-1.995-0/ggm/man/SimpleGraphOperations.Rd | 9 ----
15 files changed, 60 insertions(+), 70 deletions(-)
Title: Bias reduction in binomial-response GLMs.
Diff between brglm versions 0.5-6 dated 2011-08-17 and 0.5-7 dated 2012-08-24
Description: Fit binomial-response GLMs using either a modified-score
approach to bias reduction or maximum penalized likelihood
where penalization is by Jeffreys invariant prior. Fitting
takes place by iteratively fitting a local GLM on a pseudo-data
representation. The interface is essentially the same as 'glm'.
More flexibility is provided by the fact that custom
pseudo-data representations can be specified and used for model
fitting. Functions are provided for the construction of
confidence intervals for the bias-reduced estimates.
Author: Ioannis Kosmidis
Maintainer: Ioannis Kosmidis
DESCRIPTION | 12 ++++++------
MD5 | 24 ++++++++++++------------
inst/CHANGES | 11 ++++++++---
man/brglm.Rd | 16 ++++++++--------
man/brglm.control.Rd | 4 ++--
man/confint.brglm.Rd | 10 +++++-----
man/gethats.Rd | 2 +-
man/glm.control1.Rd | 4 ++--
man/modifications.Rd | 24 ++++++++++++------------
man/plot.profile.brglm.Rd | 2 +-
man/profile.brglm.Rd | 2 +-
man/profileObjectives.Rd | 4 ++--
man/separation.detection.Rd | 6 +++---
13 files changed, 63 insertions(+), 58 deletions(-)
Title: Spatial Search Trees
Diff between SearchTrees versions 0.5.1 dated 2012-02-24 and 0.5.2 dated 2012-08-24
Description: This package provides an implementation of the QuadTree
data structure. It uses this to implement fast k-Nearest
Neighbor and Rectangular range lookups in 2 dimenions. The
primary target is high performance interactive graphics.
Author: Gabriel Becker
Maintainer: Gabriel Becker
DESCRIPTION | 6 +++---
MD5 | 4 ++--
src/quadtree2.c | 10 +++++++---
3 files changed, 12 insertions(+), 8 deletions(-)
Title: R code for Stock Synthesis
Diff between r4ss versions 1.17 dated 2012-06-15 and 1.18 dated 2012-08-24
Description: Functions for reading output, plotting, exploring and
manipulating input files for Richard Methot's Stock Synthesis
fisheries stock assessment modeling platform.
Author: Ian Taylor, Ian Stewart, Allan Hicks, Tommy Garrison, Andre
Punt, John Wallace, Chantel Wetzel, and other contributors
Maintainer: Ian Taylor
r4ss-1.17/r4ss/R/SS_plots_test.R |only
r4ss-1.17/r4ss/man/SS_plots_test.Rd |only
r4ss-1.18/r4ss/DESCRIPTION | 10
r4ss-1.18/r4ss/MD5 | 56 -
r4ss-1.18/r4ss/R/SS_html.R | 19
r4ss-1.18/r4ss/R/SS_output.R | 120 +-
r4ss-1.18/r4ss/R/SS_plots.R | 1621 ++++++++++++++++++--------------
r4ss-1.18/r4ss/R/SS_readctl.R | 8
r4ss-1.18/r4ss/R/SSplotCatch.R | 54 -
r4ss-1.18/r4ss/R/SSplotCohorts.R |only
r4ss-1.18/r4ss/R/SSplotComps.R | 307 +++++-
r4ss-1.18/r4ss/R/SSplotData.R | 6
r4ss-1.18/r4ss/R/SSplotDiscard.R | 50
r4ss-1.18/r4ss/R/SSplotMnwt.R | 38
r4ss-1.18/r4ss/R/SSplotPars.R | 2
r4ss-1.18/r4ss/R/SSplotProfile.R |only
r4ss-1.18/r4ss/R/SSplotTimeseries.R | 13
r4ss-1.18/r4ss/R/bubble3.R | 22
r4ss-1.18/r4ss/man/SS_html.Rd | 4
r4ss-1.18/r4ss/man/SS_output.Rd | 11
r4ss-1.18/r4ss/man/SS_plots.Rd | 33
r4ss-1.18/r4ss/man/SS_profile.Rd | 90 +
r4ss-1.18/r4ss/man/SSplotBiology.Rd | 26
r4ss-1.18/r4ss/man/SSplotCatch.Rd | 68 -
r4ss-1.18/r4ss/man/SSplotCohorts.Rd |only
r4ss-1.18/r4ss/man/SSplotComparisons.Rd | 90 -
r4ss-1.18/r4ss/man/SSplotComps.Rd | 2
r4ss-1.18/r4ss/man/SSplotDiscard.Rd | 47
r4ss-1.18/r4ss/man/SSplotMnwt.Rd | 16
r4ss-1.18/r4ss/man/SSplotProfile.Rd |only
r4ss-1.18/r4ss/man/bubble3.Rd | 13
r4ss-1.18/r4ss/man/r4ss-package.Rd | 4
32 files changed, 1708 insertions(+), 1022 deletions(-)
Title: Tools for using fonts
Diff between extrafont versions 0.10 dated 2012-07-08 and 0.11 dated 2012-08-24
Description: Tools to using fonts other than the standard PostScript
fonts. This package makes it easy to use system TrueType fonts
and with PDF or PostScript output files, and with bitmap output
files in Windows. extrafont can also be used with fonts
packaged specifically to be used with, such as the fontcm
package, which has Computer Modern PostScript fonts with math
symbols. See https://github.com/wch/extrafont for instructions
and examples.
Author: Winston Chang
Maintainer: Winston Chang
extrafont-0.10/extrafont/TODO |only
extrafont-0.11/extrafont/Arialz-embed.pdf |only
extrafont-0.11/extrafont/Arialz.pdf |only
extrafont-0.11/extrafont/CMz-embed.pdf |only
extrafont-0.11/extrafont/CMz.pdf |only
extrafont-0.11/extrafont/ComicSans-embed.pdf |only
extrafont-0.11/extrafont/ComicSans.pdf |only
extrafont-0.11/extrafont/DESCRIPTION | 7
extrafont-0.11/extrafont/Garamond-embed.pdf |only
extrafont-0.11/extrafont/Garamond.pdf |only
extrafont-0.11/extrafont/Georgia-embed.pdf |only
extrafont-0.11/extrafont/Georgia.pdf |only
extrafont-0.11/extrafont/Helveticaz-embed.pdf |only
extrafont-0.11/extrafont/Helveticaz.pdf |only
extrafont-0.11/extrafont/MD5 | 40 +++-
extrafont-0.11/extrafont/NEWS | 13 +
extrafont-0.11/extrafont/R/afm.r | 11 -
extrafont-0.11/extrafont/R/font.r | 14 +
extrafont-0.11/extrafont/R/truetype.r | 30 ++-
extrafont-0.11/extrafont/R/type1.r | 6
extrafont-0.11/extrafont/R/utils.r | 19 ++
extrafont-0.11/extrafont/compiletest.r |only
extrafont-0.11/extrafont/extrafont.sublime-workspace | 104 ++++++++++--
extrafont-0.11/extrafont/fonttest-embed.pdf |binary
extrafont-0.11/extrafont/fonttest.pdf |binary
extrafont-0.11/extrafont/man/font_import.Rd | 5
extrafont-0.11/extrafont/man/ttf_import.Rd | 6
extrafont-0.11/extrafont/testcode.r | 160 +++++++++++++++----
28 files changed, 328 insertions(+), 87 deletions(-)
Title: Calls CNV from exome sequence data
Diff between ExomeDepth versions 0.8.3 dated 2012-08-16 and 0.8.4 dated 2012-08-24
Description: Calls copy number variants (CNVs) from targeted sequence
data
Author: Vincent Plagnol
Maintainer: Vincent Plagnol
DESCRIPTION | 6 ++--
MD5 | 17 ++++++-----
R/class_definition.R | 51 ++++++++++++++++++-----------------
R/countBamInGranges.R | 4 --
data/exons.hg19.RData |binary
inst/doc/ExomeDepth-vignette.Rnw | 56 ++++++++++++++++++++++++++++-----------
inst/doc/ExomeDepth-vignette.pdf |binary
man/ExomeDepth-package.Rd | 3 +-
man/somatic.CNV.call.Rd |only
src/CNV_estimate.cpp | 14 ++++++---
10 files changed, 91 insertions(+), 60 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-11 1.3
2010-09-06 1.2
2010-07-07 1.1
2010-06-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-01 0.2-5
2010-12-01 0.2-3
2009-01-05 0.2-2
2008-01-23 0.2
2005-11-17 0.1-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-16 1.6.5
2009-09-29 1.6.4
2009-01-21 1.6.1
2008-01-23 1.6
2007-05-10 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-26 1.0