Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-03 0.1-2
2008-08-31 0.1-1
Title: Positive definite sparse covariance estimators
Diff between PDSCE versions 1.0 dated 2012-08-24 and 1.1 dated 2012-08-25
Description: A package to compute and tune some positive definite and
sparse covariance estimators
Author: Adam J. Rothman
Maintainer: Adam J. Rothman
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
R/band.chol.cv.R | 2 +-
R/pdsoft.R | 2 +-
R/pdsoft.cv.R | 2 +-
man/PDSCE-package.Rd | 4 ++--
man/band.chol.Rd | 6 +++---
man/band.chol.cv.Rd | 8 ++++----
man/pdsoft.Rd | 8 ++++----
man/pdsoft.cv.Rd | 8 ++++----
10 files changed, 33 insertions(+), 33 deletions(-)
Title: CoreArray Genomic Data Structure (GDS) R Interface
Diff between gdsfmt versions 0.9.9 dated 2012-05-18 and 0.9.10 dated 2012-08-25
Description: CoreArray project is to develop portable and scalable
storage technologies for bioinformatics data, allowing parallel
computing at the multicore and cluster levels.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
gdsfmt-0.9.10/gdsfmt/DESCRIPTION | 11 +
gdsfmt-0.9.10/gdsfmt/MD5 | 54 +++++----
gdsfmt-0.9.10/gdsfmt/NEWS |only
gdsfmt-0.9.10/gdsfmt/R/GDS.all.R |only
gdsfmt-0.9.10/gdsfmt/inst |only
gdsfmt-0.9.10/gdsfmt/man/add.gdsn.Rd | 8 -
gdsfmt-0.9.10/gdsfmt/man/clusterApply.gdsn.Rd | 3
gdsfmt-0.9.10/gdsfmt/man/clusterApplylt.gdsn.Rd | 3
gdsfmt-0.9.10/gdsfmt/man/gdsfmt-package.Rd | 6 -
gdsfmt-0.9.10/gdsfmt/src/CoreDEF.h | 35 ++++--
gdsfmt-0.9.10/gdsfmt/src/CoreGDS.cpp | 9 +
gdsfmt-0.9.10/gdsfmt/src/Makevars | 2
gdsfmt-0.9.10/gdsfmt/src/Makevars.win | 2
gdsfmt-0.9.10/gdsfmt/src/dBase.cpp | 12 --
gdsfmt-0.9.10/gdsfmt/src/dBase.h | 10 +
gdsfmt-0.9.10/gdsfmt/src/dFile.cpp | 6 -
gdsfmt-0.9.10/gdsfmt/src/dPlatform.cpp | 135 ++++++++++++++----------
gdsfmt-0.9.10/gdsfmt/src/dPlatform.h | 35 ++++--
gdsfmt-0.9.10/gdsfmt/src/dSeq.cpp | 4
gdsfmt-0.9.10/gdsfmt/src/dSeq.h | 107 +++++++++++--------
gdsfmt-0.9.10/gdsfmt/src/dStream.cpp | 71 +++++++-----
gdsfmt-0.9.10/gdsfmt/src/dStream.h | 12 +-
gdsfmt-0.9.10/gdsfmt/src/dStruct.cpp | 77 ++++++++-----
gdsfmt-0.9.10/gdsfmt/src/dStruct.h | 3
gdsfmt-0.9.10/gdsfmt/src/dType.h | 36 +-----
gdsfmt-0.9.10/gdsfmt/src/gdsfmt.cpp | 61 ++++++++++
gdsfmt-0.9.10/gdsfmt/tests |only
gdsfmt-0.9.9/gdsfmt/R/GDS.all.r |only
28 files changed, 426 insertions(+), 276 deletions(-)
Title: Detect CNV and LOH from Exome Sequencing Data
Diff between ExomeCNV versions 1.3 dated 2012-06-01 and 1.4 dated 2012-08-25
Description: ExomeCNV is a statistical method to detect CNV and LOH
using depth-of-coverage and B-allele frequencies from mapped
short sequence reads in exome sequencing data.
Author: J. Fah Sathirapongsasuti, Hane Lee, and Stanley F. Nelson
Maintainer: J. Fah Sathirapongsasuti
DESCRIPTION | 10 +++++-----
MD5 | 12 ++++++------
R/CNV.analyze.R | 5 +++--
R/classify.eCNV.R | 2 ++
man/CNV.analyze.Rd | 16 ++++++++++------
man/read.all.coverage.Rd | 2 +-
man/read.coverage.gatk.Rd | 2 ++
7 files changed, 29 insertions(+), 20 deletions(-)
Title: Population Viability Analysis with Data Cloning
Diff between PVAClone versions 0.1-0 dated 2012-07-27 and 0.1-1 dated 2012-08-25
Description: Likelihood based population viability analysis in the
presence of observation error and missing data. The package
can be used to fit, compare, predict, and forecast various
growth model types using data cloning.
Author: Khurram Nadeem, Peter Solymos
Maintainer: Peter Solymos
PVAClone-0.1-0/PVAClone/man/gompertz.Rd |only
PVAClone-0.1-0/PVAClone/man/ricker.Rd |only
PVAClone-0.1-1/PVAClone/DESCRIPTION | 8 +++----
PVAClone-0.1-1/PVAClone/MD5 | 24 ++++++++++++----------
PVAClone-0.1-1/PVAClone/R/bevertonholt.R |only
PVAClone-0.1-1/PVAClone/R/gompertz.R | 7 +++---
PVAClone-0.1-1/PVAClone/R/modelselection.R | 5 ++++
PVAClone-0.1-1/PVAClone/R/ricker.R | 9 ++++----
PVAClone-0.1-1/PVAClone/R/thetalogistic.R |only
PVAClone-0.1-1/PVAClone/R/thetalogistic_D.R |only
PVAClone-0.1-1/PVAClone/data/songsparrow.rda |only
PVAClone-0.1-1/PVAClone/inst/ChangeLog | 7 ++++++
PVAClone-0.1-1/PVAClone/man/PVAClone-package.Rd | 4 ++-
PVAClone-0.1-1/PVAClone/man/growthmodels.Rd |only
PVAClone-0.1-1/PVAClone/man/model.select.Rd | 26 +++++++++++++++++++++++-
PVAClone-0.1-1/PVAClone/man/pva.Rd | 10 +++++++++
PVAClone-0.1-1/PVAClone/man/songsparrow.Rd |only
17 files changed, 77 insertions(+), 23 deletions(-)
Title: Functions for clustering of presence-absence, abundance and
multilocus genetic data
Diff between prabclus versions 2.2-3 dated 2012-08-23 and 2.2-4 dated 2012-08-25
Description: Distance-based parametric bootstrap tests for clustering
with spatial neighborhood information. Some distance measures,
Clustering of presence-absence, abundance and multilocus
genetical data for species delimitation, nearest neighbor based
noise detection. Try package?prabclus for on overview.
Author: Christian Hennig
Maintainer: Christian Hennig
prabclus-2.2-3/prabclus/DESCRIPTIONbackup |only
prabclus-2.2-4/prabclus/DESCRIPTION | 8
prabclus-2.2-4/prabclus/MD5 | 7
prabclus-2.2-4/prabclus/tests/Examples/prabclus-Ex.Rout.save | 342 ++++++----
prabclus-2.2-4/prabclus/tests/prabclustests.Rout.save | 363 +++++------
5 files changed, 389 insertions(+), 331 deletions(-)