Title: Parser combinator in R
Diff between qmrparser versions 0.1.1 dated 2011-11-21 and 0.1.2 dated 2012-08-29
Description: Basic functions for building parsers, with an application
to PC-AXIS format files.
Author: Juan Gea Rosat, Ramon Martínez Coscollà .
Maintainer:
DESCRIPTION | 11 ++++++-----
MD5 | 14 +++++++-------
R/streamParserFromFileName.R | 14 +++++---------
inst/doc/qmrparser-vignette.pdf |binary
inst/doc/qmrparser.pdf |binary
inst/noweb/README | 2 +-
inst/noweb/qmrparser.nw | 19 +++++++------------
man/qmrparser-package.Rd | 4 ++--
8 files changed, 28 insertions(+), 36 deletions(-)
Title: Mailmerge using R, LaTeX, and the Web
Diff between muRL versions 0.1-6 dated 2011-05-28 and 0.1-7 dated 2012-08-29
Description: Provides mailmerge methods for reading spreadsheets of
addresses and other relevant information to create standardized
but customizable letters. Provides a method for mapping US ZIP
codes, including those of letter recipients. Provides a method
for parsing and processing html code from online job postings
of the American Political Science Association.
Author: Ryan T. Moore
Maintainer: Ryan T. Moore
CHANGELOG | 10 ++++++++++
DESCRIPTION | 10 +++++-----
LICENSE | 2 +-
MD5 |only
R/apsahtml2csv.R | 11 ++++++++---
R/read.murl.R | 2 ++
R/write.murl.R | 4 +++-
data/murljobs.RData |binary
data/murljobs.csv | 2 +-
demo/write.murl.R | 2 +-
inst/CITATION |only
inst/doc/murlejobs.pdf |binary
man/apsahtml2csv.Rd | 4 ++--
man/murl-package.Rd | 4 ++--
man/murljobs.Rd | 5 +++--
man/read.murl.Rd | 3 ++-
man/write.murl.Rd | 4 ++--
17 files changed, 42 insertions(+), 21 deletions(-)
Title: General Smoothing Splines
Diff between gss versions 2.0-10 dated 2012-06-02 and 2.0-11 dated 2012-08-29
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu
Maintainer: Chong Gu
ChangeLog | 7 +++++++
DESCRIPTION | 12 ++++++------
MD5 | 24 ++++++++++++------------
R/ssanova.R | 1 +
R/ssanova9.R | 1 +
R/sscden.R | 2 ++
R/sscden1.R | 2 ++
R/sscox.R | 1 +
R/ssden.R | 1 +
R/ssden1.R | 1 +
R/sshzd.R | 2 ++
R/sshzd1.R | 2 ++
R/ssllrm.R | 2 ++
13 files changed, 40 insertions(+), 18 deletions(-)
Title: Flexible parametric survival models
Diff between flexsurv versions 0.1.4 dated 2012-03-24 and 0.1.5 dated 2012-08-29
Description: Flexible parametric models for time-to-event data,
including the Royston-Parmar spline model, generalized gamma
and generalized F distributions. Easily extensible to fit
user-defined parametric distributions.
Author: Christopher Jackson
Maintainer: Christopher Jackson
DESCRIPTION | 8 ++--
MD5 | 22 +++++------
R/Gompertz.R | 23 +++++++++++-
R/flexsurvreg.R | 90 +++++++++++++++++++++---------------------------
R/spline.R | 27 +++++++++++---
inst/NEWS | 17 ++++++++-
man/Gompertz.Rd | 9 ++++
man/plot.flexsurvreg.Rd | 8 +++-
man/qgeneric.Rd | 4 +-
tests/flexsurv.R | 65 ++++++++++++++++++++++++++++++++--
tests/spline.R | 5 +-
tests/utils.R | 6 +++
12 files changed, 199 insertions(+), 85 deletions(-)
Title: Microscopy Based Cytometry Data Analysis Package
Diff between Rcell versions 1.1-8 dated 2012-03-16 and 1.2-0 dated 2012-08-29
Description: This package provides functions to analyze microscopy
based cytometry datasets. It was originally design for
Cell-ID's output, but can be adapted to other image
segmentation programs. It includes functions for loading,
manipulating and plotting the data. It can also create cell's
images montages in a user defined layout.
Author: Alan Bush
Maintainer: Alan Bush
Rcell-1.1-8/Rcell/R/plot.R |only
Rcell-1.1-8/Rcell/man/update.n.tot.rd |only
Rcell-1.2-0/Rcell/DESCRIPTION | 8
Rcell-1.2-0/Rcell/MD5 | 57
Rcell-1.2-0/Rcell/NAMESPACE | 17
Rcell-1.2-0/Rcell/NEWS | 12
Rcell-1.2-0/Rcell/R/Rcell.R | 3416 ++++++++++-------------
Rcell-1.2-0/Rcell/R/append.R | 46
Rcell-1.2-0/Rcell/R/cell.hclust.R |only
Rcell-1.2-0/Rcell/R/cell.image.R | 41
Rcell-1.2-0/Rcell/R/cplot.R |only
Rcell-1.2-0/Rcell/R/misc.R | 32
Rcell-1.2-0/Rcell/Rcell-Ex.R |only
Rcell-1.2-0/Rcell/build/Rcell.pdf |binary
Rcell-1.2-0/Rcell/build/partial.rdb |binary
Rcell-1.2-0/Rcell/inst/doc/Rcell.pdf |binary
Rcell-1.2-0/Rcell/inst/doc/transform.pdf |binary
Rcell-1.2-0/Rcell/man/QC.filter.Rd | 2
Rcell-1.2-0/Rcell/man/append.rd | 2
Rcell-1.2-0/Rcell/man/as.data.frame.cell.data.rd | 148
Rcell-1.2-0/Rcell/man/cell.data.rd |only
Rcell-1.2-0/Rcell/man/cell.hclust.rd | 13
Rcell-1.2-0/Rcell/man/cimage.rd | 13
Rcell-1.2-0/Rcell/man/cplot.Rd | 321 +-
Rcell-1.2-0/Rcell/man/get.cell.image.rd | 2
Rcell-1.2-0/Rcell/man/ggplot2.themes.rd | 35
Rcell-1.2-0/Rcell/man/stat_bootstrap.Rd |only
Rcell-1.2-0/Rcell/man/stat_interactionError.Rd |only
Rcell-1.2-0/Rcell/man/stat_summaryGroup.Rd |only
Rcell-1.2-0/Rcell/man/transform.cell.data.rd | 30
Rcell-1.2-0/Rcell/man/update_img.path.rd |only
Rcell-1.2-0/Rcell/man/update_n.tot.rd |only
Rcell-1.2-0/Rcell/man/zoom.rd | 29
Rcell-1.2-0/Rcell/vignettes/Rcell.Rnw | 4
Rcell-1.2-0/Rcell/vignettes/transform.Rnw | 34
35 files changed, 1940 insertions(+), 2322 deletions(-)
Title: Pretty Heatmaps
Diff between pheatmap versions 0.7 dated 2012-08-13 and 0.7.1 dated 2012-08-29
Description: A package for drawing pretty heatmaps in R. The ordinary
heatmap function in R has several drawbacks when it comes to
producing publication quality heatmaps. It is hard to produce
pictures with consistent text, cell and overall sizes and
shapes. The function pheatmap tries to alleviate the problems
by offering more fine grained control over heatmap dimensions
and appearance.
Author: Raivo Kolde
Maintainer: Raivo Kolde
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
NEWS | 8 ++++++++
R/pheatmap.r | 40 +++++++++++++++++++++++++++++++---------
man/pheatmap.Rd | 15 ++++++++++++---
5 files changed, 58 insertions(+), 19 deletions(-)
More information about MetabolAnalyze at CRAN
Permanent link
Title: Neuwirth miscellaneous
Diff between ENmisc versions 1.2-5 dated 2012-08-26 and 1.2-6 dated 2012-08-29
Description: The ENmisc package contains utility function for different
purposes: mtapply and mlapply (multivariate version of tapply
and lapply), wtd.boxplot (a boxplot with weights), and a visual
interface to restructuring mosaic plots.
Author: Erich Neuwirth [aut, cre]
Maintainer: Erich Neuwirth
CHANGES.txt | 4 ++++
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
R/mosaicupanddown.R | 11 +++++++++--
4 files changed, 22 insertions(+), 11 deletions(-)
Title: Efficiently Read Variant Call Format (VCF) into R
Diff between vcf2geno versions 1.0 dated 2012-08-22 and 1.3 dated 2012-08-29
Description: A handy package to read VCF file
Author: Xiaowei Zhan
Maintainer: Xiaowei Zhan
vcf2geno-1.0/vcf2geno/src/Makevars |only
vcf2geno-1.0/vcf2geno/src/knetfile.c |only
vcf2geno-1.0/vcf2geno/src/knetfile.h |only
vcf2geno-1.3/vcf2geno/ChangeLog |only
vcf2geno-1.3/vcf2geno/DESCRIPTION | 29 -
vcf2geno-1.3/vcf2geno/MD5 | 107 ++-
vcf2geno-1.3/vcf2geno/R/vcf2geno.R | 8
vcf2geno-1.3/vcf2geno/bzip2.LICENSE |only
vcf2geno-1.3/vcf2geno/bzip2.README |only
vcf2geno-1.3/vcf2geno/configure |only
vcf2geno-1.3/vcf2geno/configure.ac |only
vcf2geno-1.3/vcf2geno/configure.in |only
vcf2geno-1.3/vcf2geno/inst |only
vcf2geno-1.3/vcf2geno/src/Exception.h | 10
vcf2geno-1.3/vcf2geno/src/IO.cpp | 138 ++--
vcf2geno-1.3/vcf2geno/src/IO.h | 20
vcf2geno-1.3/vcf2geno/src/Makevars.in |only
vcf2geno-1.3/vcf2geno/src/OrderedMap.h | 3
vcf2geno-1.3/vcf2geno/src/PeopleSet.h | 6
vcf2geno-1.3/vcf2geno/src/PlinkInputFile.cpp | 16
vcf2geno-1.3/vcf2geno/src/PlinkInputFile.h | 16
vcf2geno-1.3/vcf2geno/src/PlinkOutputFile.cpp | 2
vcf2geno-1.3/vcf2geno/src/R_CPP_interface.h | 5
vcf2geno-1.3/vcf2geno/src/Regex.h | 132 ++++
vcf2geno-1.3/vcf2geno/src/SimpleMatrix.h | 8
vcf2geno-1.3/vcf2geno/src/TypeConversion.h | 1
vcf2geno-1.3/vcf2geno/src/Utils.h | 4
vcf2geno-1.3/vcf2geno/src/VCFExtractor.h | 3
vcf2geno-1.3/vcf2geno/src/VCFInputFile.cpp | 1
vcf2geno-1.3/vcf2geno/src/adler32.c |only
vcf2geno-1.3/vcf2geno/src/bgzf.c | 17
vcf2geno-1.3/vcf2geno/src/blocksort.c | 6
vcf2geno-1.3/vcf2geno/src/bzCompress.c |only
vcf2geno-1.3/vcf2geno/src/bz_internal_error.c | 7
vcf2geno-1.3/vcf2geno/src/bzlib.c | 6
vcf2geno-1.3/vcf2geno/src/bzlib.h | 11
vcf2geno-1.3/vcf2geno/src/bzlib_flymake.h |only
vcf2geno-1.3/vcf2geno/src/bzlib_private.h | 6
vcf2geno-1.3/vcf2geno/src/compress.c | 746 ++------------------------
vcf2geno-1.3/vcf2geno/src/config.h |only
vcf2geno-1.3/vcf2geno/src/config.h.in |only
vcf2geno-1.3/vcf2geno/src/crc32.c |only
vcf2geno-1.3/vcf2geno/src/crc32.h |only
vcf2geno-1.3/vcf2geno/src/crctable.c | 4
vcf2geno-1.3/vcf2geno/src/decompress.c | 6
vcf2geno-1.3/vcf2geno/src/deflate.c |only
vcf2geno-1.3/vcf2geno/src/deflate.h |only
vcf2geno-1.3/vcf2geno/src/gzclose.c |only
vcf2geno-1.3/vcf2geno/src/gzguts.h |only
vcf2geno-1.3/vcf2geno/src/gzlib.c |only
vcf2geno-1.3/vcf2geno/src/gzread.c |only
vcf2geno-1.3/vcf2geno/src/gzwrite.c |only
vcf2geno-1.3/vcf2geno/src/huffman.c | 4
vcf2geno-1.3/vcf2geno/src/infback.c |only
vcf2geno-1.3/vcf2geno/src/inffast.c |only
vcf2geno-1.3/vcf2geno/src/inffast.h |only
vcf2geno-1.3/vcf2geno/src/inffixed.h |only
vcf2geno-1.3/vcf2geno/src/inflate.c |only
vcf2geno-1.3/vcf2geno/src/inflate.h |only
vcf2geno-1.3/vcf2geno/src/inftrees.c |only
vcf2geno-1.3/vcf2geno/src/inftrees.h |only
vcf2geno-1.3/vcf2geno/src/ksort.h | 2
vcf2geno-1.3/vcf2geno/src/randtable.c | 4
vcf2geno-1.3/vcf2geno/src/trees.c |only
vcf2geno-1.3/vcf2geno/src/trees.h |only
vcf2geno-1.3/vcf2geno/src/uncompr.c |only
vcf2geno-1.3/vcf2geno/src/vcf2geno.c | 2
vcf2geno-1.3/vcf2geno/src/vcf2genoLoader.cpp | 26
vcf2geno-1.3/vcf2geno/src/vcf2genoLoader.h | 1
vcf2geno-1.3/vcf2geno/src/zconf.h |only
vcf2geno-1.3/vcf2geno/src/zlib.h |only
vcf2geno-1.3/vcf2geno/src/zutil.c |only
vcf2geno-1.3/vcf2geno/src/zutil.h |only
vcf2geno-1.3/vcf2geno/tests |only
74 files changed, 486 insertions(+), 871 deletions(-)
Title: Methods for Tree-based Local Adaptive Thresholding
Diff between treethresh versions 0.1-5 dated 2010-01-07 and 0.1-6 dated 2012-08-29
Description: This package implements TreeThresh, a locally adaptive
version of EbayesThresh.
Author: Ludger Evers
Maintainer: Ludger Evers
treethresh-0.1-5/treethresh/inst/doc/onedwavillu.eps |only
treethresh-0.1-5/treethresh/inst/doc/prune.eps |only
treethresh-0.1-5/treethresh/inst/doc/twodwavillu.eps |only
treethresh-0.1-6/treethresh/DESCRIPTION | 14 ++++++-------
treethresh-0.1-6/treethresh/MD5 |only
treethresh-0.1-6/treethresh/R/treethresh.R | 8 +++----
treethresh-0.1-6/treethresh/data/row263.RData |binary
treethresh-0.1-6/treethresh/data/tiles.RData |binary
treethresh-0.1-6/treethresh/data/trees.RData |binary
treethresh-0.1-6/treethresh/inst/doc/treethresh.Rnw | 2 -
treethresh-0.1-6/treethresh/inst/doc/treethresh.pdf |binary
treethresh-0.1-6/treethresh/man/coefficients.Rd | 19 ++++++------------
treethresh-0.1-6/treethresh/man/estimate.sdev.Rd | 9 +-------
treethresh-0.1-6/treethresh/man/get.t.Rd | 10 +--------
treethresh-0.1-6/treethresh/man/get.w.Rd | 10 +--------
treethresh-0.1-6/treethresh/man/prune.Rd | 9 +-------
treethresh-0.1-6/treethresh/man/row263.Rd | 2 -
treethresh-0.1-6/treethresh/man/subtree.Rd | 9 +-------
treethresh-0.1-6/treethresh/man/thresh.Rd | 9 +-------
treethresh-0.1-6/treethresh/man/trees.Rd | 2 -
treethresh-0.1-6/treethresh/man/treethresh.Rd | 2 -
treethresh-0.1-6/treethresh/man/wavelet.treethresh.Rd | 9 +++-----
treethresh-0.1-6/treethresh/man/wtthresh.Rd | 2 -
23 files changed, 39 insertions(+), 77 deletions(-)
Title: Multiresolution Kriging based on Markov random fields
Diff between LatticeKrig versions 1.4 dated 2012-02-10 and 2.2.1 dated 2012-08-29
Description: Functions for the interpolation of large spatial datasets.
This package uses a "fixed rank Kriging" approach using a large
number of basis functions and provides spatial estimates that
are comparable to standard families of covariance functions and
estimates that are close to interpolating the observations (a
small nugget variance.) The covariance model for this method
can approximate the Matern covariance but also allows for a
multi-resolution model and supports efficient computation of
the profile likelihood for estimating covariance parameters.
Also included are generic methods for prediction, standard
errors for prediction, plotting of the estimated surface and
conditional and unconditional simulation.
Author: Douglas Nychka, Dorit Hammerling, Stephen Sain, and Tia Lerud
Maintainer: Doug Nychka
LatticeKrig-1.4/LatticeKrig/R/MLE.search.LKrig.R |only
LatticeKrig-1.4/LatticeKrig/R/Wbasis.R |only
LatticeKrig-1.4/LatticeKrig/man/MLE.search.LKrig.Rd |only
LatticeKrig-1.4/LatticeKrig/man/Wendland.basis.Rd |only
LatticeKrig-1.4/LatticeKrig/tests/LKbasis.test.R |only
LatticeKrig-2.2.1/LatticeKrig/DESCRIPTION | 21
LatticeKrig-2.2.1/LatticeKrig/MD5 | 79 +
LatticeKrig-2.2.1/LatticeKrig/R/BACK/LKrig.cov.R.OLD |only
LatticeKrig-2.2.1/LatticeKrig/R/BACK/LKrig.precision.R.OLD |only
LatticeKrig-2.2.1/LatticeKrig/R/BACK/MLE.search.LKrig.R.OLD |only
LatticeKrig-2.2.1/LatticeKrig/R/BACK/refine.MLE.search.LKrig.R.OLD |only
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.MLE.R |only
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.MRF.precision.R | 24
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.R | 138 +-
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.basis.R | 46
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.coef.R | 7
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.cov.R | 30
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.cov.plot.R | 3
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.lnPlike.R | 44
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.make.par.grid.R |only
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.misc.R |only
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.par.grid.R |only
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.precision.R | 47
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.predict.surface.R |only
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.setup.R | 69 -
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.sim.conditional.R |only
LatticeKrig-2.2.1/LatticeKrig/R/LKrig.traceA.R |only
LatticeKrig-2.2.1/LatticeKrig/R/Radial.basis.R |only
LatticeKrig-2.2.1/LatticeKrig/R/predict.LKrig.R | 12
LatticeKrig-2.2.1/LatticeKrig/R/predict.se.LKrig.R |only
LatticeKrig-2.2.1/LatticeKrig/R/print.LKinfo.R |only
LatticeKrig-2.2.1/LatticeKrig/R/print.LKrig.R | 22
LatticeKrig-2.2.1/LatticeKrig/data/NorthAmericanRainfall.rda |binary
LatticeKrig-2.2.1/LatticeKrig/man.OLD |only
LatticeKrig-2.2.1/LatticeKrig/man/LKinfo.Rd |only
LatticeKrig-2.2.1/LatticeKrig/man/LKrig.Ctable.Rd | 5
LatticeKrig-2.2.1/LatticeKrig/man/LKrig.MLE.Rd |only
LatticeKrig-2.2.1/LatticeKrig/man/LKrig.Rd | 494 +++++-----
LatticeKrig-2.2.1/LatticeKrig/man/LKrig.basis.Rd | 301 ++----
LatticeKrig-2.2.1/LatticeKrig/man/LKrig.internal.Rd | 51 -
LatticeKrig-2.2.1/LatticeKrig/man/NorthAmericanRainfall.Rd | 13
LatticeKrig-2.2.1/LatticeKrig/man/Radial.Basis.Rd |only
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.basis.test.R |only
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.basis.test.Rout.save |only
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.lnPLike.test.R |only
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.lnPlike.test.Rout.save |only
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.precision.test.R | 98 +
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.precision.test.Rout.save | 37
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.se.test.R |only
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.se.test.Rout.save |only
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.test.R | 92 +
LatticeKrig-2.2.1/LatticeKrig/tests/LKrig.test.Rout.save | 32
52 files changed, 1028 insertions(+), 637 deletions(-)