Package rcdk updated to version 3.1.20.1 with previous version 3.1.9 dated 2012-07-06

Title: rcdk - Interface to the CDK Libraries
Description: This package allows the user to access functionality in the CDK, a Java framework for cheminformatics. This allows the user to load molecules, evaluate fingerprints, calculate molecular descriptors and so on. In addition the CDK API allows the user to view structures in 2D.
Author: Rajarshi Guha
Maintainer: Rajarshi Guha

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Package IBrokers updated to version 0.9-8 with previous version 0.9-3 dated 2011-08-09

Title: R API to Interactive Brokers Trader Workstation
Description: Provides native R access to Interactive Brokers Trader Workstation API.
Author: Jeffrey A. Ryan
Maintainer: Jeffrey A. Ryan

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Package dismo updated to version 0.7-23 with previous version 0.7-17 dated 2012-02-07

Title: Species distribution modeling
Description: Functions for species distribution modeling, that is, predicting entire geographic distributions form occurences at specific sites.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith
Maintainer: Robert J. Hijmans

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New package twoStageGwasPower with initial version 0.99.0
Title: Compute thresholds and power for two-stage gwas
Package: twoStageGwasPower
Type: Package
Version: 0.99.0
Date: 2012-08-28
Author: Dirk F Moore
Maintainer: Dirk F Moore
Description: This program computes thresholds and power for a two-stage genome-wide association study. It follows the methods described in Skol AD, Scott, LJ, Abecasis GR, Boehnke M (2006) Nature Genetics doi:10.1038/ng1706 and in the "CaTS" computer program (http://www.sph.umich.edu/csg/abecasis/CaTS/)
License: GPL (>= 2)
Packaged: 2012-09-01 16:33:49 UTC; moore
Repository: CRAN
Date/Publication: 2012-09-01 17:04:59

More information about twoStageGwasPower at CRAN
Permanent link

Package pacose (with last version 1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-22 1.2
2012-06-04 1.1
2012-04-19 1.0

Permanent link

Package Rcmdr updated to version 1.9-0 with previous version 1.8-4 dated 2012-04-11

Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre], Liviu Andronic [ctb], Michael Ash [ctb], Milan Bouchet-Valat [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], Andy Chang [ctb], Philippe Grosjean [ctb], Richard Heiberger [ctb], Kosar Karimi Pour [ctb], G. Jay Kerns [ctb], Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], Uwe Ligges [ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert Muenchen [ctb], Duncan Murdoch [ctb], Erich Neuwirth [ctb], Dan Putler [ctb], Brian Ripley [ctb], Miroslav Ristic [ctb], Peter Wolf [ctb]
Maintainer: John Fox

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Package openintro updated to version 1.4 with previous version 1.3 dated 2012-03-29

Title: OpenIntro data sets and supplemental functions
Description: This package is a supplement to OpenIntro Statistics, which is a free textbook available at openintro.org (at cost paperbacks are also available for under $10 on Amazon). The package contains data sets used in the textbook along with custom plotting functions for reproducing book figures. Note that many functions and examples include color transparency. Some plotting elements may not show up properly (or at all) in some Windows versions.
Author: David M Diez, Christopher D Barr, and Mine Cetinkaya-Rundel
Maintainer: David M Diez

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Package effects updated to version 2.2-1 with previous version 2.1-1 dated 2012-04-11

Title: Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models
Description: Graphical and tabular effect displays, e.g., of interactions, for linear generalized linear, multinomial-logit, and proportional-odds logit models.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Jangman Hong [aut], Robert Andersen [ctb], David Firth [ctb], Michael Friendly [ctb]
Maintainer: John Fox

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Package VGAM updated to version 0.9-0 with previous version 0.8-7 dated 2012-04-13

Title: Vector Generalized Linear and Additive Models
Description: Vector generalized linear and additive models, and associated models (Reduced-Rank VGLMs, Quadratic RR-VGLMs, Reduced-Rank VGAMs). This package fits many models and distribution by maximum likelihood estimation (MLE) or penalized MLE. Also fits constrained ordination models in ecology.
Author: Thomas W. Yee
Maintainer: Thomas Yee

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Package sca updated to version 0.8-9 with previous version 0.8-8 dated 2012-03-19

Title: Simple Component Analysis
Description: Simple Component Analysis (SCA) often provides much more interpretable components than Principal Components (PCA) while still representing much of the variability in the data.
Author: Valentin Rousson and Martin Maechler
Maintainer: Martin Maechler

Diff between sca versions 0.8-8 dated 2012-03-19 and 0.8-9 dated 2012-09-01

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Package Rlabkey updated to version 2.1.119 with previous version 2.1.118 dated 2012-05-05

Title: Data exchange between R and LabKey Server
Description: This package allows an R user to discover, query and modify data in LabKey Server
Author: Peter Hussey
Maintainer: Cory Nathe

Diff between Rlabkey versions 2.1.118 dated 2012-05-05 and 2.1.119 dated 2012-09-01

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Package HLMdiag updated to version 0.1.6 with previous version 0.1.5 dated 2012-03-06

Title: Diagnostic tools for two-level normal hierarchical linear models
Description: A suite of diagnostic tools for two-level normal hierarchical linear models. The package offers not only traditional case-deletion diagnostics (Cook's distance, covratio, covtrace, and MDFFITS) but also provides graphics for residual analysis. Currently, case deletion is performed by iteratively refitting the model using lmer in the lme4 package, so for data sets with many groups, computation is currently slow.
Author: Adam Loy
Maintainer: Adam Loy

Diff between HLMdiag versions 0.1.5 dated 2012-03-06 and 0.1.6 dated 2012-09-01

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New package carcass with initial version 1.0
Package: carcass
Type: Package
Title: Estimation of the number of fatalities from carcass searches
Version: 1.0
Date: 2011-11-28
Author: Fraenzi Korner-Nievergelt, Ivo Niermann, Oliver Behr, Robert Brinkmann, Pius Korner, Barbara Hellriegel, Manuela Huso
Maintainer: Fraenzi Korner-Nievergelt
Depends: R (>= 2.12.0), arm
Description: The number of bird or bat fatalities from collisions with buildings, towers or wind energy turbines can be estimated based on carcass searches and experimentally assessed carcass persistence times and searcher efficiency. This package provides diverse functions for estimating the probability that a bird or bat that died is found by a searcher. It further provides a function to obtain a posterior distribution of the number of fatalities based on the number of carcasses found and the estimated detection probability.
License: GPL-2
LazyLoad: yes
Packaged: 2012-08-31 18:03:17 UTC; Frnzi
Repository: CRAN
Date/Publication: 2012-09-01 05:55:53

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