Title: Efficient Estimation of Covariance and (Partial) Correlation
Diff between corpcor versions 1.6.3 dated 2012-05-09 and 1.6.4 dated 2012-09-02
Description: This package implements a James-Stein-type shrinkage
estimator for the covariance matrix, with separate shrinkage
for variances and correlations. The details of the method are
explained in Sch\"afer and Strimmer (2005) and Opgen-Rhein and
Strimmer (2007). The approach is both computationally as well
as statistically very efficient, it is applicable to "small n,
large p" data, and always returns a positive definite and
well-conditioned covariance matrix. In addition to inferring
the covariance matrix the package also provides shrinkage
estimators for partial correlations and partial variances. The
inverse of the covariance and correlation matrix can be
efficiently computed, as well as any arbitrary power of the
shrinkage correlation matrix. Furthermore, functions are
available for fast singular value decomposition, for computing
the pseudoinverse, and for checking the rank and positive
definiteness of a matrix.
Author: Juliane Sch\"afer, Rainer Opgen-Rhein, Verena Zuber, Miika
Ahdesm\"aki, A. Pedro Duarte Silva, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NEWS | 5 +++++
R/shrink.intensity.R | 4 ++--
4 files changed, 14 insertions(+), 9 deletions(-)
Title: Particle Swarm Optimization
Diff between pso versions 1.0.2 dated 2012-08-24 and 1.0.3 dated 2012-09-02
Description: The package provides an implementation of PSO consistent
with the standard PSO 2007/2011 by Maurice Clerc et al.
Additionally a number of ancillary routines are provided for
easy testing and graphics.
Author: Claus Bendtsen
Maintainer: Claus Bendtsen
DESCRIPTION | 14 ++++++------
MD5 | 8 +++----
R/psoptim.R | 58 +++++++++++++++++++++++++++++++++++++++++++++--------
man/pso-package.Rd | 20 +++++++++---------
man/psoptim.Rd | 17 ++++++++++++---
5 files changed, 85 insertions(+), 32 deletions(-)
Title: Distance and Similarity Measures
Diff between proxy versions 0.4-8 dated 2012-08-24 and 0.4-9 dated 2012-09-02
Description: Provides an extensible framework for the efficient
calculation of auto- and cross-proximities, along with
implementations of the most popular ones.
Author: David Meyer and Christian Buchta
Maintainer: David Meyer
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NAMESPACE | 18 +++++++++++++++++-
R/dist.R | 19 +++++++++----------
R/util.R | 8 ++++----
inst/doc/overview.pdf |binary
6 files changed, 39 insertions(+), 24 deletions(-)
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Diff between sets versions 1.0-10 dated 2012-08-27 and 1.0-11 dated 2012-09-02
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, customizable sets, and intervals.
Author: David Meyer [aut, cre], Kurt Hornik [aut], Christian Buchta
[ctb]
Maintainer: David Meyer
DESCRIPTION | 16 ++++++++++------
MD5 | 12 ++++++------
NAMESPACE | 5 ++++-
R/closure.R | 2 +-
R/reduction.R | 2 +-
inst/doc/sets.pdf |binary
src/closure.c | 4 ++--
7 files changed, 24 insertions(+), 17 deletions(-)
Title: Korean NLP Package
Diff between KoNLP versions 0.73 dated 2012-07-04 and 0.75 dated 2012-09-02
Description: Korean language processing package. Morphological
analyzer, POS tagger, Keystroke converter, Hangul automata...
Author: Heewon Jeon
Maintainer: Heewon Jeon
KoNLP-0.73/KoNLP/R/KoAnalyzerRun.R |only
KoNLP-0.73/KoNLP/inst/dics |only
KoNLP-0.73/KoNLP/man/detectInputEncoding.Rd |only
KoNLP-0.75/KoNLP/DESCRIPTION | 17 ++--
KoNLP-0.75/KoNLP/MD5 | 56 ++++++----------
KoNLP-0.75/KoNLP/NAMESPACE | 4 -
KoNLP-0.75/KoNLP/NEWS | 9 ++
KoNLP-0.75/KoNLP/R/hangulUtils.R |only
KoNLP-0.75/KoNLP/R/koAnalyzerRun.R |only
KoNLP-0.75/KoNLP/R/manageDic.R | 12 +--
KoNLP-0.75/KoNLP/R/onLoad.R | 18 ++++-
KoNLP-0.75/KoNLP/R/sysdata.rda |binary
KoNLP-0.75/KoNLP/R/tagdata.R |only
KoNLP-0.75/KoNLP/README.md |only
KoNLP-0.75/KoNLP/data |only
KoNLP-0.75/KoNLP/inst/java/ko.jar |binary
KoNLP-0.75/KoNLP/man/KtoS.Rd |only
KoNLP-0.75/KoNLP/man/SimplePos09.Rd | 2
KoNLP-0.75/KoNLP/man/SimplePos22.Rd | 2
KoNLP-0.75/KoNLP/man/StoK.Rd |only
KoNLP-0.75/KoNLP/man/convertHangulStringToJamos.Rd | 2
KoNLP-0.75/KoNLP/man/convertHangulStringToKeyStrokes.Rd | 2
KoNLP-0.75/KoNLP/man/editweights.Rd |only
KoNLP-0.75/KoNLP/man/is.ascii.Rd |only
KoNLP-0.75/KoNLP/man/is.jaeum.Rd |only
KoNLP-0.75/KoNLP/man/is.moeum.Rd |only
KoNLP-0.75/KoNLP/man/tags.Rd |only
27 files changed, 68 insertions(+), 56 deletions(-)
Title: Geographic analysis and modeling with raster data
Diff between raster versions 2.0-08 dated 2012-06-28 and 2.0-12 dated 2012-09-02
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functions and processing of very large files is
supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
raster-2.0-08/raster/man/valueNA.Rd |only
raster-2.0-12/raster/ChangeLog | 12
raster-2.0-12/raster/DESCRIPTION | 14 -
raster-2.0-12/raster/MD5 | 354 +++++++++++++-------------
raster-2.0-12/raster/NAMESPACE | 2
raster-2.0-12/raster/R/AAAClasses.R | 130 +++------
raster-2.0-12/raster/R/addLayer.R | 1
raster-2.0-12/raster/R/animate.R |only
raster-2.0-12/raster/R/area.R | 16 +
raster-2.0-12/raster/R/artith.R | 19 +
raster-2.0-12/raster/R/as.data.frame.R | 52 ++-
raster-2.0-12/raster/R/as.spatial.R |only
raster-2.0-12/raster/R/bilinearValue.R | 32 --
raster-2.0-12/raster/R/brick.R | 8
raster-2.0-12/raster/R/cellValues.R | 10
raster-2.0-12/raster/R/click.R | 7
raster-2.0-12/raster/R/coerce.R | 45 +++
raster-2.0-12/raster/R/crosstab.R | 4
raster-2.0-12/raster/R/density.R | 31 +-
raster-2.0-12/raster/R/depracated.R | 2
raster-2.0-12/raster/R/destair.R |only
raster-2.0-12/raster/R/dropLayer.R | 1
raster-2.0-12/raster/R/expand.R | 2
raster-2.0-12/raster/R/focal_old.R | 6
raster-2.0-12/raster/R/fourCellsFromXY.R |only
raster-2.0-12/raster/R/freq.R | 34 ++
raster-2.0-12/raster/R/gainoffset.R | 41 ++-
raster-2.0-12/raster/R/gdalFormats.R | 2
raster-2.0-12/raster/R/getValues.R | 32 ++
raster-2.0-12/raster/R/getValuesBlock.R | 65 ++++
raster-2.0-12/raster/R/getValuesRows.R | 44 +++
raster-2.0-12/raster/R/hdrEnvi.R | 26 -
raster-2.0-12/raster/R/hdrRaster.R | 5
raster-2.0-12/raster/R/hist.R | 18 -
raster-2.0-12/raster/R/imageplot2.R | 8
raster-2.0-12/raster/R/indexReplace.R | 2
raster-2.0-12/raster/R/inifile.R | 2
raster-2.0-12/raster/R/isLonLat.R | 4
raster-2.0-12/raster/R/kml.R | 47 ++-
raster-2.0-12/raster/R/kml_multiple.R | 32 +-
raster-2.0-12/raster/R/layerize.R |only
raster-2.0-12/raster/R/math.R | 24 +
raster-2.0-12/raster/R/merge.R | 15 +
raster-2.0-12/raster/R/modal.R | 22 +
raster-2.0-12/raster/R/modalRaster.R | 10
raster-2.0-12/raster/R/naValue.R | 16 -
raster-2.0-12/raster/R/names.R | 51 ++-
raster-2.0-12/raster/R/netCDFread.R | 61 +++-
raster-2.0-12/raster/R/netCDFreadCells.R | 45 ++-
raster-2.0-12/raster/R/netCDFtoRasterCD.R | 131 +++++++--
raster-2.0-12/raster/R/netCDFtoStack.R | 24 +
raster-2.0-12/raster/R/netCDFwriteCD.R | 217 +++++++++++----
raster-2.0-12/raster/R/newPLot.R | 2
raster-2.0-12/raster/R/plot.R | 32 +-
raster-2.0-12/raster/R/print.R | 14 -
raster-2.0-12/raster/R/projectRaster.R | 13
raster-2.0-12/raster/R/raster.R | 48 ++-
raster-2.0-12/raster/R/rasterFromBIL.R | 1
raster-2.0-12/raster/R/rasterFromCells.R | 5
raster-2.0-12/raster/R/rasterFromGDAL.R | 6
raster-2.0-12/raster/R/rasterFromRasterFile.R | 2
raster-2.0-12/raster/R/rasterToPolygons.R | 5
raster-2.0-12/raster/R/rasterizePolygons.R | 2
raster-2.0-12/raster/R/readAscii.R | 4
raster-2.0-12/raster/R/readCells.R | 4
raster-2.0-12/raster/R/reclass.R | 2
raster-2.0-12/raster/R/reclassify.R |only
raster-2.0-12/raster/R/sampleRandom.R | 21 -
raster-2.0-12/raster/R/sampleStratified.R | 6
raster-2.0-12/raster/R/setValues.R | 39 ++
raster-2.0-12/raster/R/shift.R | 17 -
raster-2.0-12/raster/R/show.R | 35 +-
raster-2.0-12/raster/R/shp.R | 13
raster-2.0-12/raster/R/spplot.R | 2
raster-2.0-12/raster/R/stack.R | 42 ++-
raster-2.0-12/raster/R/stackApply.R | 61 ++--
raster-2.0-12/raster/R/stackQuick.R | 51 +++
raster-2.0-12/raster/R/subs.R | 4
raster-2.0-12/raster/R/subset.R | 47 ++-
raster-2.0-12/raster/R/summary.R | 127 +++------
raster-2.0-12/raster/R/terrain.R | 2
raster-2.0-12/raster/R/tmpFile.R | 4
raster-2.0-12/raster/R/update.R | 7
raster-2.0-12/raster/R/values.R | 5
raster-2.0-12/raster/R/writeAllGDAL.R | 9
raster-2.0-12/raster/R/writeRaster.R | 21 +
raster-2.0-12/raster/R/writeStartStopGDAL.R | 9
raster-2.0-12/raster/R/zonal.R | 4
raster-2.0-12/raster/inst/doc/Raster.Rnw | 4
raster-2.0-12/raster/inst/doc/Raster.pdf |binary
raster-2.0-12/raster/inst/doc/functions.pdf |binary
raster-2.0-12/raster/inst/doc/rasterfile.pdf |binary
raster-2.0-12/raster/man/Compare-methods.Rd | 2
raster-2.0-12/raster/man/KML.Rd | 23 +
raster-2.0-12/raster/man/Math-methods.Rd | 5
raster-2.0-12/raster/man/NAvalue.Rd |only
raster-2.0-12/raster/man/Raster-classes.Rd | 16 -
raster-2.0-12/raster/man/Summary-methods.Rd | 2
raster-2.0-12/raster/man/adjacent.Rd | 5
raster-2.0-12/raster/man/aggregate.Rd | 8
raster-2.0-12/raster/man/approxNA.Rd | 2
raster-2.0-12/raster/man/as.data.frame.Rd | 9
raster-2.0-12/raster/man/autocor.Rd | 4
raster-2.0-12/raster/man/bands.Rd | 2
raster-2.0-12/raster/man/brick.Rd | 2
raster-2.0-12/raster/man/calc.Rd | 9
raster-2.0-12/raster/man/cellFrom.Rd | 15 -
raster-2.0-12/raster/man/cellStats.Rd | 4
raster-2.0-12/raster/man/cellsFromExtent.Rd | 2
raster-2.0-12/raster/man/clump.Rd | 2
raster-2.0-12/raster/man/compare.Rd | 2
raster-2.0-12/raster/man/count.Rd | 2
raster-2.0-12/raster/man/cover.Rd | 2
raster-2.0-12/raster/man/cut.Rd | 2
raster-2.0-12/raster/man/density.Rd | 31 --
raster-2.0-12/raster/man/dimensions.Rd | 27 -
raster-2.0-12/raster/man/disaggregate.Rd | 2
raster-2.0-12/raster/man/expand.Rd | 2
raster-2.0-12/raster/man/extension.Rd | 2
raster-2.0-12/raster/man/extent.Rd | 2
raster-2.0-12/raster/man/extract.Rd | 15 -
raster-2.0-12/raster/man/extractIndex.Rd | 2
raster-2.0-12/raster/man/factor.Rd | 8
raster-2.0-12/raster/man/focal.Rd | 11
raster-2.0-12/raster/man/freq.Rd | 20 +
raster-2.0-12/raster/man/gainoffset.Rd | 4
raster-2.0-12/raster/man/getValues.Rd | 19 -
raster-2.0-12/raster/man/getValuesBlock.Rd | 1
raster-2.0-12/raster/man/hdrFiles.Rd | 2
raster-2.0-12/raster/man/headtail.Rd | 2
raster-2.0-12/raster/man/hillShade.Rd | 2
raster-2.0-12/raster/man/iniFile.Rd | 2
raster-2.0-12/raster/man/interpolate.Rd | 44 +--
raster-2.0-12/raster/man/isLonLat.Rd | 2
raster-2.0-12/raster/man/layerStats.Rd | 2
raster-2.0-12/raster/man/layerize.Rd |only
raster-2.0-12/raster/man/merge.Rd | 14 -
raster-2.0-12/raster/man/modal.Rd | 9
raster-2.0-12/raster/man/mosaic.Rd | 4
raster-2.0-12/raster/man/names.Rd | 3
raster-2.0-12/raster/man/ncell.Rd | 4
raster-2.0-12/raster/man/options.Rd | 4
raster-2.0-12/raster/man/overlay.Rd | 6
raster-2.0-12/raster/man/plot.Rd | 15 -
raster-2.0-12/raster/man/plotRGB.Rd | 9
raster-2.0-12/raster/man/pointdistance.Rd | 2
raster-2.0-12/raster/man/predict.Rd | 22 -
raster-2.0-12/raster/man/programming.Rd | 2
raster-2.0-12/raster/man/projectRaster.Rd | 12
raster-2.0-12/raster/man/raster-package.Rd | 20 -
raster-2.0-12/raster/man/raster.Rd | 10
raster-2.0-12/raster/man/rasterFromCells.Rd | 2
raster-2.0-12/raster/man/rasterFromXYZ.Rd | 6
raster-2.0-12/raster/man/rasterTmpFile.Rd | 2
raster-2.0-12/raster/man/rasterToPolygons.Rd | 2
raster-2.0-12/raster/man/rasterize.Rd | 28 +-
raster-2.0-12/raster/man/readAll.Rd | 2
raster-2.0-12/raster/man/reclass.Rd | 49 ---
raster-2.0-12/raster/man/reclassify.Rd |only
raster-2.0-12/raster/man/resample.Rd | 2
raster-2.0-12/raster/man/resolution.Rd | 2
raster-2.0-12/raster/man/roundExtent.Rd | 2
raster-2.0-12/raster/man/rowFromCell.Rd | 6
raster-2.0-12/raster/man/sampleRandom.Rd | 3
raster-2.0-12/raster/man/sampleStratified.Rd | 4
raster-2.0-12/raster/man/saveStack.Rd | 2
raster-2.0-12/raster/man/scalebar.Rd | 6
raster-2.0-12/raster/man/setExtent.Rd | 2
raster-2.0-12/raster/man/setValues.Rd | 27 +
raster-2.0-12/raster/man/slopeAspect.Rd | 2
raster-2.0-12/raster/man/spplot.Rd | 2
raster-2.0-12/raster/man/subset.Rd | 18 -
raster-2.0-12/raster/man/substitute.Rd | 8
raster-2.0-12/raster/man/terrain.Rd | 12
raster-2.0-12/raster/man/text.Rd | 2
raster-2.0-12/raster/man/unstack.Rd | 2
raster-2.0-12/raster/man/update.Rd | 4
raster-2.0-12/raster/man/weighted.mean.Rd | 4
raster-2.0-12/raster/man/writeRaster.Rd | 32 +-
raster-2.0-12/raster/man/xyFromCell.Rd | 4
raster-2.0-12/raster/man/zonal.Rd | 13
raster-2.0-12/raster/src/solar.c | 4
raster-2.0-12/raster/src/terrain.c | 5
183 files changed, 1921 insertions(+), 1192 deletions(-)
Title: Analysis of multivariate normal datasets with missing values
Diff between norm versions 1.0-9.2 dated 2010-04-29 and 1.0-9.3 dated 2012-09-02
Description: Analysis of multivariate normal datasets with missing
values
Author: Ported to R by Alvaro A. Novo
Maintainer: John Fox
DESCRIPTION | 10 +++++-----
MD5 |only
NAMESPACE |only
R/norm.R | 6 +++---
data/mdata.rda |binary
5 files changed, 8 insertions(+), 8 deletions(-)