Title: Statistical shape analysis
Diff between shapes versions 1.1-5 dated 2012-01-04 and 1.1-6 dated 2012-09-04
Description: Routines for the statistical analysis of shapes. In
particular, the package provides routines for Procrustes
analysis, displaying shapes and principal components, testing
for mean shape difference, thin-plate spline transformation
grids and comparing covariance matrices.
Author: Ian Dryden
Maintainer: Ian Dryden
shapes-1.1-5/shapes/.Rbuildindex.17145 |only
shapes-1.1-5/shapes/.Rbuildindex.17356 |only
shapes-1.1-5/shapes/.Rbuildindex.19736 |only
shapes-1.1-5/shapes/.Rbuildindex.19950 |only
shapes-1.1-5/shapes/INDEX |only
shapes-1.1-5/shapes/data/dna.dat.R |only
shapes-1.1-5/shapes/data/panf.dat.R |only
shapes-1.1-5/shapes/data/panm.dat.R |only
shapes-1.1-5/shapes/data/pongof.dat.R |only
shapes-1.1-5/shapes/data/pongom.dat.R |only
shapes-1.1-5/shapes/data/schizophrenia.dat.R |only
shapes-1.1-6/shapes/DESCRIPTION | 20
shapes-1.1-6/shapes/MD5 | 44 -
shapes-1.1-6/shapes/NAMESPACE |only
shapes-1.1-6/shapes/R/shapes.R | 759 +++++++++++++------------
shapes-1.1-6/shapes/data/brains.rda |binary
shapes-1.1-6/shapes/data/dna.dat.rda |only
shapes-1.1-6/shapes/data/gorf.dat.rda |binary
shapes-1.1-6/shapes/data/gorm.dat.rda |binary
shapes-1.1-6/shapes/data/macf.dat.rda |binary
shapes-1.1-6/shapes/data/macm.dat.rda |binary
shapes-1.1-6/shapes/data/nsa.rda |binary
shapes-1.1-6/shapes/data/panf.dat.rda |only
shapes-1.1-6/shapes/data/panm.dat.rda |only
shapes-1.1-6/shapes/data/pongof.dat.rda |only
shapes-1.1-6/shapes/data/pongom.dat.rda |only
shapes-1.1-6/shapes/data/protein.rda |binary
shapes-1.1-6/shapes/data/qcet2.dat.rda |binary
shapes-1.1-6/shapes/data/qlet2.dat.rda |binary
shapes-1.1-6/shapes/data/qset2.dat.rda |binary
shapes-1.1-6/shapes/data/schizophrenia.dat.rda |only
shapes-1.1-6/shapes/data/sooty.dat.rda |binary
shapes-1.1-6/shapes/man/distcov.Rd |only
shapes-1.1-6/shapes/man/estcov.Rd |only
shapes-1.1-6/shapes/man/shapes-internal.Rd | 3
35 files changed, 434 insertions(+), 392 deletions(-)
Title: R tools for integrating phylogenies and ecology
Diff between picante versions 1.3-0 dated 2011-04-24 and 1.4-1 dated 2012-09-04
Description: Phylocom integration, community analyses, null-models,
traits and evolution in R
Author: Steven W. Kembel
Maintainer: Steven W. Kembel
DESCRIPTION | 10 +++++-----
MD5 |only
NAMESPACE |only
R/pblm.R | 4 ++--
R/pblmpredict.R | 4 ++--
R/pcd.R | 2 +-
R/pglmm.R |only
R/phylodiversity.R | 8 ++++----
R/phylosignal.R | 2 +-
R/phylostruct.R | 10 +++++-----
R/pic3.R | 3 +--
R/sppregs.R | 2 +-
inst/doc/picante-intro.Rnw | 9 ++++-----
inst/doc/picante-intro.pdf |binary
man/comm.phylo.qr.Rd | 2 +-
man/pblm.Rd | 3 ++-
man/pcd.Rd | 2 ++
man/pglmm.Rd |only
man/picante-package.Rd | 4 ++--
man/traitgram.Rd | 5 +++++
20 files changed, 38 insertions(+), 32 deletions(-)
Title: Analysis of Oceanographic data
Diff between oce versions 0.9-2 dated 2012-07-30 and 0.9-3 dated 2012-09-04
Description: Supports the analysis of Oceanographic data, including ADP
measurements, CTD measurements, sectional data, sea-level time
series, coastline files, etc. Provides functions for
calculating seawater properties such as potential temperature
and density, as well as derived properties such as buoyancy
frequency and dynamic height.
Author: Dan Kelley
Maintainer: Dan Kelley
oce-0.9-2/oce/inst/doc/oce-ctdfig.pdf |only
oce-0.9-2/oce/inst/doc/oce-ctdrawfig.pdf |only
oce-0.9-2/oce/inst/doc/pt.png |only
oce-0.9-3/oce/DESCRIPTION | 8 ++--
oce-0.9-3/oce/MD5 | 54 ++++++++++++++-----------------
oce-0.9-3/oce/NEWS | 5 ++
oce-0.9-3/oce/R/coastline.R | 17 +++++----
oce-0.9-3/oce/R/ctd.R | 41 +++++++++++++++++++++--
oce-0.9-3/oce/R/misc.R | 17 +++++----
oce-0.9-3/oce/R/sw.R | 9 ++++-
oce-0.9-3/oce/R/teos.R | 18 ++++++----
oce-0.9-3/oce/data/riley.rda |binary
oce-0.9-3/oce/demo/TS.R | 6 +--
oce-0.9-3/oce/demo/coastline.R | 2 -
oce-0.9-3/oce/demo/ctd.R | 6 +--
oce-0.9-3/oce/inst/doc/oce.Rnw | 2 -
oce-0.9-3/oce/inst/doc/oce.pdf |binary
oce-0.9-3/oce/man/as.ctd.Rd | 25 ++++++++------
oce-0.9-3/oce/man/munk.Rd | 2 -
oce-0.9-3/oce/man/oceBisect.Rd | 6 +--
oce-0.9-3/oce/man/plotProfile.Rd | 2 -
oce-0.9-3/oce/man/prettyPosition.Rd | 3 +
oce-0.9-3/oce/man/redfieldNC.Rd | 4 +-
oce-0.9-3/oce/man/redfieldPlankton.Rd | 2 -
oce-0.9-3/oce/man/riley.Rd | 17 ++++-----
oce-0.9-3/oce/man/swSCTp.Rd | 18 +++++-----
oce-0.9-3/oce/man/wilson.Rd | 2 -
oce-0.9-3/oce/man/xyzToEnuAdp.Rd | 15 ++++----
oce-0.9-3/oce/man/xyzToEnuAdv.Rd | 10 ++---
oce-0.9-3/oce/web |only
30 files changed, 174 insertions(+), 117 deletions(-)
Title: A general-purpose package for dynamic report generation in R
Diff between knitr versions 0.7 dated 2012-07-17 and 0.8 dated 2012-09-04
Description: This package provides a general-purpose tool for dynamic
report generation in R, which can be used to deal with any type
of (plain text) files, including Sweave, HTML, Markdown and
reStructuredText. The patterns of code chunks and inline R
expressions can be customized. R code is evaluated as if it
were copied and pasted in an R terminal thanks to the evaluate
package (e.g. we do not need to explicitly print() plots from
ggplot2 or lattice). R code can be reformatted by the formatR
package so that long lines are automatically wrapped, with
indent and spaces being added, and comments being preserved. A
simple caching mechanism is provided to cache results from
computations for the first time and the computations will be
skipped the next time. Almost all common graphics devices,
including those in base R and add-on packages like Cairo,
cairoDevice and tikzDevice, are built-in with this package and
it is straightforward to switch between devices without writing
any special functions. The width and height as well as
alignment of plots in the output document can be specified in
chunk options (the size of plots for graphics devices is still
supported as usual). Multiple plots can be recorded in a single
code chunk, and it is also allowed to rearrange plots to the
end of a chunk or just keep the last plot. Warnings, messages
and errors are written in the output document by default (can
be turned off). Currently LaTeX, HTML, Markdown and reST are
supported, and other output formats can be supported by hook
functions. The large collection of hooks in this package makes
it possible for the user to control almost everything in the R
code input and output. Hooks can be used either to format the
output or to run a specified R code fragment before or after a
code chunk. The language in code chunks is not restricted to R
only (there is simple support to Python and Awk, etc). Many
features are borrowed from or inspired by Sweave, cacheSweave,
pgfSweave, brew and decumar.
Author: Yihui Xie
Maintainer: Yihui Xie
knitr-0.7/knitr/inst/examples/knitr-lang.Rmd |only
knitr-0.7/knitr/inst/examples/knitr-lang.md |only
knitr-0.7/knitr/inst/examples/knitr-minimal.rst |only
knitr-0.7/knitr/inst/examples/knitr-upload.Rmd |only
knitr-0.7/knitr/inst/examples/knitr-upload.md |only
knitr-0.7/knitr/inst/themes/.knitr.css |only
knitr-0.8/knitr/.Rinstignore | 1
knitr-0.8/knitr/DESCRIPTION | 15 +-
knitr-0.8/knitr/MD5 | 104 ++++++++++----------
knitr-0.8/knitr/Makefile | 16 ++-
knitr-0.8/knitr/NAMESPACE | 1
knitr-0.8/knitr/NEWS | 85 ++++++++++++++++
knitr-0.8/knitr/NEWS.md | 48 +++++++++
knitr-0.8/knitr/R/block.R | 99 +++++++++++--------
knitr-0.8/knitr/R/concordance.R | 4
knitr-0.8/knitr/R/defaults.R | 4
knitr-0.8/knitr/R/engine.R | 15 ++
knitr-0.8/knitr/R/header.R | 1
knitr-0.8/knitr/R/hooks-html.R | 2
knitr-0.8/knitr/R/hooks-latex.R | 13 +-
knitr-0.8/knitr/R/hooks-md.R | 24 ++--
knitr-0.8/knitr/R/output.R | 61 +++++++----
knitr-0.8/knitr/R/package.R | 7 +
knitr-0.8/knitr/R/parser.R | 6 -
knitr-0.8/knitr/R/pattern.R | 31 +++---
knitr-0.8/knitr/R/plot.R | 9 +
knitr-0.8/knitr/R/themes.R | 17 +--
knitr-0.8/knitr/R/utils-rd2html.R |only
knitr-0.8/knitr/R/utils.R | 21 +++-
knitr-0.8/knitr/README.md | 8 +
knitr-0.8/knitr/inst/doc/Makefile | 2
knitr-0.8/knitr/inst/doc/knitr-intro.Rnw | 3
knitr-0.8/knitr/inst/doc/knitr-intro.pdf |binary
knitr-0.8/knitr/inst/doc/knitr-refcard.Rnw |only
knitr-0.8/knitr/inst/doc/knitr-refcard.lyx |only
knitr-0.8/knitr/inst/doc/knitr-refcard.pdf |only
knitr-0.8/knitr/inst/examples/knit-all.R | 3
knitr-0.8/knitr/inst/examples/knitr-beamer.Rnw | 1
knitr-0.8/knitr/inst/examples/knitr-graphics.Rnw | 1
knitr-0.8/knitr/inst/examples/knitr-latex.Rtex | 54 ----------
knitr-0.8/knitr/inst/examples/knitr-listings.Rnw | 1
knitr-0.8/knitr/inst/examples/knitr-manual.Rnw | 26 ++---
knitr-0.8/knitr/inst/examples/knitr-minimal.Rhtml | 64 ------------
knitr-0.8/knitr/inst/examples/knitr-minimal.Rnw | 1
knitr-0.8/knitr/inst/examples/knitr-minimal.Rrst | 38 -------
knitr-0.8/knitr/inst/examples/knitr-minimal.brew | 10 -
knitr-0.8/knitr/inst/examples/knitr-packages.bib | 4
knitr-0.8/knitr/inst/examples/knitr-slides.Rmd | 69 -------------
knitr-0.8/knitr/inst/examples/knitr-slides.md | 112 ----------------------
knitr-0.8/knitr/inst/examples/knitr-spin.html | 2
knitr-0.8/knitr/inst/examples/knitr-subfloats.Rnw | 3
knitr-0.8/knitr/inst/examples/knitr-themes.Rnw | 1
knitr-0.8/knitr/inst/examples/knitr-twocolumn.Rnw | 1
knitr-0.8/knitr/inst/misc/R.css |only
knitr-0.8/knitr/inst/misc/highlight.css |only
knitr-0.8/knitr/inst/misc/highlight.pack.js |only
knitr-0.8/knitr/inst/misc/knitr.css |only
knitr-0.8/knitr/inst/tests/test-utils.R | 2
knitr-0.8/knitr/man/knit.Rd | 25 ++--
knitr-0.8/knitr/man/knit_child.Rd | 4
knitr-0.8/knitr/man/knit_rd.Rd |only
knitr-0.8/knitr/man/knitr-package.Rd | 10 +
62 files changed, 465 insertions(+), 564 deletions(-)
Title: Tools for subgroup analyses with multiple trial data using
aggregate statistics
Diff between ipdmeta versions 2.3 dated 2012-06-12 and 2.4 dated 2012-09-04
Description: This package provides functions to estimate an IPD linear
mixed effects model for a continuous outcome and any
categorical covariate from study summary statistics. There are
also functions for estimating the power of a
treatment-covariate interaction test in an individual patient
data meta-analysis from aggregate data.
Author: S. Kovalchik
Maintainer: S. Kovalchik
DESCRIPTION | 8 ++++----
MD5 | 15 ++++++++-------
NEWS | 6 ++++++
R/class_ipdlme.R | 14 +++++++-------
R/ipd_lme.R | 38 +++++++++++++++++---------------------
R/ipd_lme_hetero.R |only
man/Qt.Rd | 2 --
man/ipd.sep.Rd | 2 --
man/ipdlme.Rd | 19 +++++++++++++++++--
9 files changed, 59 insertions(+), 45 deletions(-)
Title: Matrix exponential
Diff between expm versions 0.98-5 dated 2011-08-20 and 0.99-0 dated 2012-09-04
Description: Computation of the matrix exponential and related
quantities.
Author: Vincent Goulet, Christophe Dutang, Martin Maechler, David
Firth, Marina Shapira, Michael Stadelmann,
expm-developers@lists.R-forge.R-project.org
Maintainer: Martin Maechler
expm-0.98-5/expm/R/dgebal.R |only
expm-0.98-5/expm/R/matexp.R |only
expm-0.98-5/expm/data/matStig.rda |only
expm-0.98-5/expm/demo/dgebalTst.R |only
expm-0.98-5/expm/inst/doc/Makefile |only
expm-0.98-5/expm/inst/doc/expm.bbl |only
expm-0.98-5/expm/inst/doc/expm.tex |only
expm-0.98-5/expm/man/dgebal.Rd |only
expm-0.99-0/expm/ChangeLog | 28 ++++++
expm-0.99-0/expm/DESCRIPTION | 10 +-
expm-0.99-0/expm/MD5 | 67 +++++++--------
expm-0.99-0/expm/NAMESPACE | 10 +-
expm-0.99-0/expm/R/balance.R |only
expm-0.99-0/expm/R/expm.R | 74 +++++++++++------
expm-0.99-0/expm/R/expm2.R | 6 -
expm-0.99-0/expm/R/expm_vec.R |only
expm-0.99-0/expm/TODO |only
expm-0.99-0/expm/data/matStig.R |only
expm-0.99-0/expm/demo/00Index | 2
expm-0.99-0/expm/demo/balanceTst.R |only
expm-0.99-0/expm/demo/exact-fn.R | 23 -----
expm-0.99-0/expm/demo/expm.R | 11 +-
expm-0.99-0/expm/inst/doc/expm.bib | 1
expm-0.99-0/expm/inst/doc/expm.pdf |binary
expm-0.99-0/expm/inst/test-tools.R | 28 ------
expm-0.99-0/expm/man/balance.Rd |only
expm-0.99-0/expm/man/expAtv.Rd |only
expm-0.99-0/expm/man/expm.Rd | 33 +++++--
expm-0.99-0/expm/man/matpow.Rd | 2
expm-0.99-0/expm/src/R_dgebal.c | 2
expm-0.99-0/expm/src/expm.h | 13 +++
expm-0.99-0/expm/src/init.c | 12 ++
expm-0.99-0/expm/src/matexp.f | 56 ++++++-------
expm-0.99-0/expm/src/matrexp.f | 2
expm-0.99-0/expm/tests/Frechet-test.R | 6 -
expm-0.99-0/expm/tests/bal-ex.R | 4
expm-0.99-0/expm/tests/compare-bal-expm.R | 2
expm-0.99-0/expm/tests/ex.R | 123 +++++++++++++++++++----------
expm-0.99-0/expm/tests/ex2.R | 2
expm-0.99-0/expm/tests/exact-ex.R | 126 ++++++++++++++++++++++++------
expm-0.99-0/expm/tests/expm-Cond.R | 7 +
expm-0.99-0/expm/tests/log+sqrt.R | 26 ++++--
42 files changed, 430 insertions(+), 246 deletions(-)
Title: Interactive exploratory spatial data analysis
Diff between GeoXp versions 1.5.7 dated 2012-07-31 and 1.6.0 dated 2012-09-04
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplot, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
DESCRIPTION | 12 -
GeoXp-Ex.R | 442 ----------------------------------------
MD5 | 68 +++---
R/angleplotmap.R | 43 +--
R/barmap.R | 89 +++++---
R/barnbmap.r | 95 +++++---
R/boxplotmap.R | 59 ++---
R/carte.R | 141 +++++++++---
R/choix.couleur.r | 12 -
R/dbledensitymap.R | 106 +++++----
R/dblehistomap.R | 90 +++++---
R/densitymap.R | 94 +++++---
R/driftmap.R | 39 +--
R/ginimap.R | 69 +++---
R/graphique.R | 11
R/histnbmap.r | 90 ++++----
R/histobarmap.R | 99 +++++---
R/histomap.R | 96 ++++----
R/moranplotmap.R | 144 +++++++------
R/neighbourmap.R | 99 +++++---
R/pcamap.R | 129 +++++++----
R/polyboxplotmap.R | 68 +++---
R/scattermap.R | 93 +++++---
R/variocloudmap.R | 52 ++--
inst/doc/fig1.pdf |binary
inst/doc/fig2.pdf |binary
inst/doc/fig2b.pdf |binary
inst/doc/fig2c.pdf |binary
inst/doc/fig2d.pdf |binary
inst/doc/fig3.pdf |binary
inst/doc/fig4.pdf |binary
inst/doc/fig5.pdf |binary
inst/doc/presentation_geoxp.pdf |binary
man/carte.Rd | 3
man/choix.couleur.Rd | 3
35 files changed, 1098 insertions(+), 1148 deletions(-)
Title: Functions for spatial point pattern analysis
Diff between ecespa versions 1.1-04 dated 2010-04-12 and 1.1-5 dated 2012-09-04
Description: Some wrappers, functions and data sets for for spatial
point pattern analysis (mainly based on spatstat), used in the
book "Introduccion al Analisis Espacial de Datos en Ecologia y
Ciencias Ambientales: Metodos y Aplicaciones".
Author: Marcelino de la Cruz Rot, with contributions of Philip M. Dixon
and Jose M. Blanco-Moreno
Maintainer: Marcelino de la Cruz Rot
ecespa-1.1-04/ecespa/R/zzz.r |only
ecespa-1.1-5/ecespa/DESCRIPTION | 12 +-
ecespa-1.1-5/ecespa/MD5 |only
ecespa-1.1-5/ecespa/NAMESPACE |only
ecespa-1.1-5/ecespa/R/Kci.R | 195 ++++++++++++++++----------------------
ecespa-1.1-5/ecespa/R/dixon2002.R | 1
ecespa-1.1-5/ecespa/R/getis.R | 31 ++----
ecespa-1.1-5/ecespa/R/syrjala.R | 2
ecespa-1.1-5/ecespa/man/K1K2.rd | 2
9 files changed, 109 insertions(+), 134 deletions(-)
Title: Estimators of prediction accuracy for time-to-event data.
Diff between survAUC versions 1.0-4 dated 2011-12-22 and 1.0-5 dated 2012-09-04
Description: The package provides a variety of functions to estimate
time-dependent true/false positive rates and AUC curves from a
set of censored survival data.
Author: Sergej Potapov, Werner Adler and Matthias Schmid.
Maintainer: Sergej Potapov
survAUC-1.0-4/survAUC/build |only
survAUC-1.0-4/survAUC/survAUC.xcodeproj |only
survAUC-1.0-5/survAUC/DESCRIPTION | 15 ++++++++-------
survAUC-1.0-5/survAUC/MD5 | 19 ++-----------------
survAUC-1.0-5/survAUC/R/utils.R | 10 +++++++---
5 files changed, 17 insertions(+), 27 deletions(-)
Title: Normalize NanoString miRNA and mRNA data
Diff between NanoStringNorm versions 1.1.9 dated 2012-07-16 and 1.1.10 dated 2012-09-04
More information about NanoStringNorm at CRAN
Description: A set of tools for normalizing, diagnostics and
visualization of Nanostring nCounter data
Author: Daryl M. Waggott
Maintainer: Daryl Waggott
DESCRIPTION | 8
MD5 | 53 +--
NAMESPACE | 1
NEWS |only
R/NanoStringNorm.R | 44 +--
R/Plot.NanoStringNorm.R | 437 +++++++++++++++++++-----------
R/check.trait.values.R | 12
R/code.count.normalization.R | 7
R/get.batch.effects.R | 4
R/get.beta.se.and.p.R | 2
R/get.geo.mean.R | 11
R/get.trait.summary.stats.R | 4
R/get.ttest.and.foldchange.R | 4
R/norm.comp.R | 250 +++++++++++------
R/output.formatting.R | 14
R/predict.concentration.R | 4
R/probe.correction.factor.normalization.R | 12
R/read.markup.RCC.R |only
R/read.xls.RCC.R | 37 +-
R/sample.content.normalization.R | 11
inst/doc/NanoStringNorm_Introduction.Rnw | 6
inst/doc/NanoStringNorm_Introduction.pdf |binary
man/NanoStringNorm.Rd | 22 -
man/Plot.NanoStringNorm.Rd | 6
man/Plot.NanoStringNorm.gvis.Rd | 2
man/norm.comp.Rd | 3
man/read.markup.RCC.Rd |only
man/read.xls.RCC.Rd | 3
vignettes/NanoStringNorm_Introduction.Rnw | 6
29 files changed, 606 insertions(+), 357 deletions(-)
Permanent link
Title: Nearest Neighbour Contingency Table Analysis
Diff between dixon versions 0.0-3 dated 2012-03-19 and 0.0-4 dated 2012-09-04
Description: Function to test spatial segregation and association based
in contingency table analysis of nearest neighbour counts
following Dixon (2002). Some fortran code has been included to
the original dixon2002 function of the ecespa package to
improve speed.
Author: Marcelino de la Cruz Rot and Philip M. Dixon
Maintainer: Marcelino de la Cruz Rot
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NAMESPACE | 4 ++--
R/mNNinfo2b.R | 2 +-
4 files changed, 10 insertions(+), 10 deletions(-)
Title: Statistical Disclosure Control methods for the generation of
public- and scientific-use files.
Diff between sdcMicro versions 3.1.1 dated 2012-04-12 and 3.1.2 dated 2012-09-04
Description: Data from statistical agencies and other institutions are
mostly confidential. This package can be used for the
generation of anonymized (micro)data, i.e. for the generation
of public- and scientific-use files. The package sdcMicroGUI
includes a graphical user interface for the methods in this
package.
Author: Matthias Templ, Alexander Kowarik, Bernhard Meindl
Maintainer: Matthias Templ
sdcMicro-3.1.1/sdcMicro/R/measure_hier.R |only
sdcMicro-3.1.1/sdcMicro/R/measure_thres.R |only
sdcMicro-3.1.1/sdcMicro/R/plot.indivRisk.r |only
sdcMicro-3.1.1/sdcMicro/R/plot.localSupp2.R |only
sdcMicro-3.1.1/sdcMicro/R/print.localSupp2.R |only
sdcMicro-3.1.1/sdcMicro/man/plot.indivRisk.Rd |only
sdcMicro-3.1.1/sdcMicro/man/plot.localSupp2.Rd |only
sdcMicro-3.1.1/sdcMicro/man/print.localSupp2.Rd |only
sdcMicro-3.1.2/sdcMicro/DESCRIPTION | 13
sdcMicro-3.1.2/sdcMicro/MD5 | 113 -
sdcMicro-3.1.2/sdcMicro/NAMESPACE | 28
sdcMicro-3.1.2/sdcMicro/R/LLmodGlobalRisk.R |only
sdcMicro-3.1.2/sdcMicro/R/LocalRecProg.R | 67
sdcMicro-3.1.2/sdcMicro/R/freqCalc.r | 5
sdcMicro-3.1.2/sdcMicro/R/localSupp2.R | 3
sdcMicro-3.1.2/sdcMicro/R/localSupp2Wrapper.R | 3
sdcMicro-3.1.2/sdcMicro/R/localSuppression.R |only
sdcMicro-3.1.2/sdcMicro/R/measure_risk.R | 169 +
sdcMicro-3.1.2/sdcMicro/R/microaggregation.R | 1204 +++++------
sdcMicro-3.1.2/sdcMicro/R/plot.localSuppression.R |only
sdcMicro-3.1.2/sdcMicro/R/pram_strata.R | 19
sdcMicro-3.1.2/sdcMicro/R/print.freqCalc.R | 4
sdcMicro-3.1.2/sdcMicro/R/print.localSuppression.R |only
sdcMicro-3.1.2/sdcMicro/R/rankSwap.R | 7
sdcMicro-3.1.2/sdcMicro/R/summary.freqCalc.R | 2
sdcMicro-3.1.2/sdcMicro/R/zzz.R | 2
sdcMicro-3.1.2/sdcMicro/data/CASCrefmicrodata.rda |binary
sdcMicro-3.1.2/sdcMicro/data/EIA.rda |binary
sdcMicro-3.1.2/sdcMicro/data/Tarragona.rda |binary
sdcMicro-3.1.2/sdcMicro/data/casc1.rda |binary
sdcMicro-3.1.2/sdcMicro/data/francdat.rda |binary
sdcMicro-3.1.2/sdcMicro/data/free1.rda |binary
sdcMicro-3.1.2/sdcMicro/data/microData.rda |binary
sdcMicro-3.1.2/sdcMicro/data/testdata.RData |binary
sdcMicro-3.1.2/sdcMicro/data/testdata2.RData |only
sdcMicro-3.1.2/sdcMicro/inst/doc/guidelines.Rnw |only
sdcMicro-3.1.2/sdcMicro/inst/doc/guidelines.pdf |only
sdcMicro-3.1.2/sdcMicro/inst/doc/sdcMicroPaper.pdf |binary
sdcMicro-3.1.2/sdcMicro/man/LLmodGlobalRisk.Rd |only
sdcMicro-3.1.2/sdcMicro/man/LocalRecProg.Rd |only
sdcMicro-3.1.2/sdcMicro/man/freqCalc.Rd | 2
sdcMicro-3.1.2/sdcMicro/man/localSupp2.Rd | 14
sdcMicro-3.1.2/sdcMicro/man/localSupp2Wrapper.Rd | 21
sdcMicro-3.1.2/sdcMicro/man/localSuppression.Rd |only
sdcMicro-3.1.2/sdcMicro/man/measure_risk.Rd | 62
sdcMicro-3.1.2/sdcMicro/man/microaggregation.Rd | 4
sdcMicro-3.1.2/sdcMicro/man/plot.localSuppression.Rd |only
sdcMicro-3.1.2/sdcMicro/man/print.localSuppression.Rd |only
sdcMicro-3.1.2/sdcMicro/man/sdcMicro-deprecated.Rd |only
sdcMicro-3.1.2/sdcMicro/man/sdcMicro-package.Rd | 16
sdcMicro-3.1.2/sdcMicro/man/testdata.Rd | 28
sdcMicro-3.1.2/sdcMicro/src/0Main.cpp | 10
sdcMicro-3.1.2/sdcMicro/src/Framework.h | 4
sdcMicro-3.1.2/sdcMicro/src/LocalRecProg/EdmondsMatch-Inc.h | 809 +++----
sdcMicro-3.1.2/sdcMicro/src/LocalRecProg/datadesc.cpp | 424 ++--
sdcMicro-3.1.2/sdcMicro/src/LocalRecProg/datadesc.h | 3
sdcMicro-3.1.2/sdcMicro/src/LocalRecProg/edmonds.cpp | 1268 ++++++------
sdcMicro-3.1.2/sdcMicro/src/LocalRecProg/edmonds.h | 8
sdcMicro-3.1.2/sdcMicro/src/LocalRecProg/kneibmatch.cpp | 452 ++--
sdcMicro-3.1.2/sdcMicro/src/Measure_Risk.h | 236 --
sdcMicro-3.1.2/sdcMicro/src/Pram.h | 4
sdcMicro-3.1.2/sdcMicro/vignettes/FinalLogoSmaller.pdf |only
sdcMicro-3.1.2/sdcMicro/vignettes/ablauf.dia |only
sdcMicro-3.1.2/sdcMicro/vignettes/ablauf.png |only
sdcMicro-3.1.2/sdcMicro/vignettes/confintPram.pdf |only
sdcMicro-3.1.2/sdcMicro/vignettes/confintSwap.pdf |only
sdcMicro-3.1.2/sdcMicro/vignettes/da1.sty |only
sdcMicro-3.1.2/sdcMicro/vignettes/deliverable3.bib |only
sdcMicro-3.1.2/sdcMicro/vignettes/gui1.png |only
sdcMicro-3.1.2/sdcMicro/vignettes/gui2.png |only
sdcMicro-3.1.2/sdcMicro/vignettes/guidelines-001.pdf |only
sdcMicro-3.1.2/sdcMicro/vignettes/guidelines.Rnw |only
sdcMicro-3.1.2/sdcMicro/vignettes/risk1.pdf |only
sdcMicro-3.1.2/sdcMicro/vignettes/risk2.pdf |only
sdcMicro-3.1.2/sdcMicro/vignettes/risk3.pdf |only
75 files changed, 2596 insertions(+), 2408 deletions(-)
Title: Shape Analysis of Outlines
Diff between Momocs versions 0.1-02 dated 2012-08-21 and 0.1-03 dated 2012-09-04
Description: Momocs is intended to ease and popularize shape analysis
of outlines (especially using elliptical Fourier analysis). It
mostly hinges on the functions developed in Morphometrics with
R (Claude, 2008). From outline extraction of images and
elliptical Fourier calculation to multivariate analysis and the
visualization of transformations within the morphological
space, Momocs provides a complete and convenient toolkit to
specialists within every field that are, or may be, interested
in morphological comparisons of outlines.
Author: Vincent Bonhomme, Sandrine Picq, Julien Claude
Maintainer: Vincent Bonhomme
ChangeLog |only
DESCRIPTION | 10 -
MD5 | 49 ++++----
Momocs.Rproj |only
R/Coo.R | 110 +++++++++++-------
R/Nef.R | 28 ++--
R/global.R | 243 +++++++++++++++++++++++++++-------------
data/bot.rda |binary
data/hearts.rda |only
man/Calibration-smooth.qual.Rd | 4
man/Class-Coo.Rd | 13 +-
man/Dataset-bot.Rd | 2
man/Dataset-hearts.Rd |only
man/Import-.jpg.Rd | 11 +
man/Import-.txt.Rd | 9 -
man/MultAn-dudi.plot.Rd | 9 -
man/MultAn-manova.nef.Rd | 5
man/MultAn-pca.Rd | 6
man/Outline-Ptolemy.Rd | 4
man/Outline-eFourier-methods.Rd | 2
man/Outline-ef.amplify.Rd |only
man/Outline-efourier.Rd | 4
man/Outline-rfourier.Rd | 2
man/Outline-tfourier.Rd | 4
man/Utilities-coo-oscillo.Rd | 4
man/Utilities-coo-plot.Rd | 17 ++
man/Utilities-coo-utilities.Rd | 23 +++
man/Utilities-ellpar.Rd | 2
28 files changed, 362 insertions(+), 199 deletions(-)
Title: The R-to-MOSEK Optimization Interface
Diff between Rmosek versions 1.2.3 dated 2012-06-07 and 1.2.4 dated 2012-09-04
Description: An interface to the MOSEK optimization library designed to
solve large-scale mathematical optimization problems. Supports
linear, quadratic and second order cone optimization
with/without integer variables, in addition to the more general
separable convex problems. Trial and free academic licenses
available at http://www.mosek.com.
Author: Henrik Alsing Friberg
Maintainer: Henrik Alsing Friberg
DESCRIPTION | 20
MD5 | 73 -
NEWS | 15
inst/doc/userguide.pdf |binary
inst/extdata/qo1.opf |only
man/mosek.Rd | 75 +
man/mosek_read.Rd | 38
man/mosek_write.Rd | 23
src/Rmosek.cc | 502 +++++------
src/compatibility/fallbacks.cc | 132 +--
src/compatibility/fallbacks.h | 58 -
src/compatibility/overwriteHead.cc | 128 +-
src/local_stubs.cc | 40
src/local_stubs.h | 38
src/rmsk_globalvars.cc | 54 -
src/rmsk_msg_base.cc | 100 +-
src/rmsk_msg_base.h | 70 -
src/rmsk_msg_mosek.cc | 28
src/rmsk_namespace.h | 18
src/rmsk_numeric_casts.h | 80 -
src/rmsk_obj_arguments.cc | 755 ++++++++---------
src/rmsk_obj_arguments.h | 265 +++---
src/rmsk_obj_constraints.cc | 1032 +++++++++++------------
src/rmsk_obj_constraints.h | 264 +++---
src/rmsk_obj_matrices.cc | 469 +++++-----
src/rmsk_obj_matrices.h | 218 ++--
src/rmsk_obj_mosek.cc | 108 +-
src/rmsk_obj_mosek.h | 48 -
src/rmsk_obj_qobj.cc |only
src/rmsk_obj_qobj.h |only
src/rmsk_obj_sexp.cc | 334 +++----
src/rmsk_obj_sexp.h | 148 +--
src/rmsk_utils_interface.cc | 316 +++----
src/rmsk_utils_mosek.cc | 1621 ++++++++++++++++++-------------------
src/rmsk_utils_mosek.h | 10
src/rmsk_utils_scopt.cc | 512 +++++------
src/rmsk_utils_scopt.h | 140 +--
src/rmsk_utils_sexp.cc | 652 +++++++-------
src/rmsk_utils_sexp.h | 52 -
39 files changed, 4275 insertions(+), 4161 deletions(-)
Title: Scale functions for graphics.
Diff between scales versions 0.2.1 dated 2012-05-08 and 0.2.2 dated 2012-09-04
Description: Scales map data to aesthetics, and provide methods for
automatically determining breaks and labels for axes and
legends.
Author: Hadley Wickham
Maintainer: Hadley Wickham
DESCRIPTION | 6 +--
MD5 | 45 +++++++++++++--------------
NAMESPACE | 29 +++++++++--------
NEWS | 25 +++++++++++++++
R/bounds.r | 67 ++++++++++++++++++++++++++++++++++++----
R/breaks.r | 4 +-
R/full-seq.r | 5 +--
R/pal-brewer.r | 4 +-
R/pal-gradient.r | 5 +--
R/pal-shape.r | 8 ++++
R/scale-continuous.r | 4 +-
R/trans-date.r | 35 +++++++++++++++++----
R/trans.r | 2 -
build/partial.rdb |binary
inst/tests/test-trans-date.r |only
inst/tests/test-zero-range.r | 71 +++++++++++++++++++++++++++++++++++++++----
man/cbreaks.Rd | 2 -
man/cscale.Rd | 2 -
man/extended_breaks.Rd | 4 +-
man/gradient_n_pal.Rd | 5 ++-
man/log_trans.Rd | 2 -
man/time_trans.Rd | 7 +++-
man/trans_new.Rd | 2 -
man/zero_range.Rd | 41 +++++++++++++++++++++++-
24 files changed, 298 insertions(+), 77 deletions(-)
Title: Rcmdr Plug-In for Kaplan-Meier Plot and Other Plots by Using the
ggplot2 Package
Diff between RcmdrPlugin.KMggplot2 versions 0.1-0 dated 2012-05-18 and 0.1-1 dated 2012-09-04
More information about RcmdrPlugin.KMggplot2 at CRAN
Description: This package is an R Commander plug-in for Kaplan-Meier
plot and other plots by using the ggplot2 package.
Author: Triad sou. and Kengo NAGASHIMA
Maintainer: Triad sou.
RcmdrPlugin.KMggplot2-0.1-0/RcmdrPlugin.KMggplot2/man/theme-theme_rect2.Rd |only
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/DESCRIPTION | 14 -
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/MD5 | 45 +--
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/NAMESPACE | 2
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/NEWS | 12 -
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/guiparts-toolbox.R | 2
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/package.R | 3
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-aaa.R | 12 -
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-box.R | 13 -
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-contour.R | 6
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-discretebar.R | 6
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-dist.R | 6
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-hist.R | 4
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-km.R | 8
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-line.R | 6
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-pie.R | 16 -
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-qq.R | 4
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-scatter.R | 6
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/plot-scattermat.R | 4
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/theme-bw.R | 76 +++---
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/theme-gray.R | 72 +++---
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/R/theme-simple.R | 116 +++-------
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.KMggplot2.mo |binary
RcmdrPlugin.KMggplot2-0.1-1/RcmdrPlugin.KMggplot2/po/R-RcmdrPlugin.KMggplot2-ja.po | 8
24 files changed, 213 insertions(+), 228 deletions(-)
Permanent link
Title: Project MOSAIC (mosaic-web.org) statistics and mathematics
teaching utilities
Diff between mosaic versions 0.5-1 dated 2012-07-05 and 0.6-2 dated 2012-09-04
Description: Data sets and utilities from Project MOSAIC
(mosaic-web.org) used to teach mathematics, statistics,
computation and modeling. Funded by the NSF, Project MOSAIC is
a community of educators working to tie together aspects of
quantitative work that students in science, technology,
engineering and mathematics will need in their professional
lives, but which are usually taught in isolation, if at all.
Author: Randall Pruim
Maintainer: Randall Pruim
mosaic-0.5-1/mosaic/data/Animals.rda |only
mosaic-0.5-1/mosaic/inst/doc/Calculus-src.pdf |only
mosaic-0.5-1/mosaic/inst/doc/Resampling-src.pdf |only
mosaic-0.5-1/mosaic/man/Animals.Rd |only
mosaic-0.5-1/mosaic/man/fetchData-internel.Rd |only
mosaic-0.6-2/mosaic/DESCRIPTION | 13
mosaic-0.6-2/mosaic/MD5 | 152 ++++++-----
mosaic-0.6-2/mosaic/NAMESPACE | 4
mosaic-0.6-2/mosaic/R/Calculus.R | 97 ++++---
mosaic-0.6-2/mosaic/R/Tukey.R |only
mosaic-0.6-2/mosaic/R/aggregating.R | 237 ++++++++---------
mosaic-0.6-2/mosaic/R/confint.R | 9
mosaic-0.6-2/mosaic/R/datasets.R | 48 +++
mosaic-0.6-2/mosaic/R/datasetsOLI.R | 166 ++++++------
mosaic-0.6-2/mosaic/R/do.R | 5
mosaic-0.6-2/mosaic/R/evalFormula.R |only
mosaic-0.6-2/mosaic/R/expandFun.R | 47 ++-
mosaic-0.6-2/mosaic/R/fetchData.R | 285 ++++++++++++---------
mosaic-0.6-2/mosaic/R/findZeros.R | 242 +++++++++++-------
mosaic-0.6-2/mosaic/R/findZerosMult.R | 290 ++++++++++++++++------
mosaic-0.6-2/mosaic/R/frequencyPolygon.R |only
mosaic-0.6-2/mosaic/R/interval.R | 13
mosaic-0.6-2/mosaic/R/makeFun.R | 16 -
mosaic-0.6-2/mosaic/R/panel.lmbands.R |only
mosaic-0.6-2/mosaic/R/plotFun.R | 23 +
mosaic-0.6-2/mosaic/R/settings.R | 3
mosaic-0.6-2/mosaic/R/simplify.R |only
mosaic-0.6-2/mosaic/R/smoothers.R | 5
mosaic-0.6-2/mosaic/R/symbolicInt.R |only
mosaic-0.6-2/mosaic/R/tally.R | 77 -----
mosaic-0.6-2/mosaic/R/xhistogram.R | 2
mosaic-0.6-2/mosaic/R/xpnorm.R | 2
mosaic-0.6-2/mosaic/R/zzz.R | 15 -
mosaic-0.6-2/mosaic/data/GestationLongevity.rda |only
mosaic-0.6-2/mosaic/data/RailTrail.rda |only
mosaic-0.6-2/mosaic/inst/NEWS.Rd | 18 +
mosaic-0.6-2/mosaic/inst/doc/Calculus.Rnw | 4
mosaic-0.6-2/mosaic/inst/doc/Calculus.pdf |binary
mosaic-0.6-2/mosaic/inst/doc/MinimalR.Rnw |only
mosaic-0.6-2/mosaic/inst/doc/MinimalR.pdf |only
mosaic-0.6-2/mosaic/inst/doc/Resampling.Rnw | 4
mosaic-0.6-2/mosaic/inst/doc/Resampling.pdf |binary
mosaic-0.6-2/mosaic/inst/tests/test-aggregating.R | 2
mosaic-0.6-2/mosaic/inst/tests/test-calculus.R | 50 +--
mosaic-0.6-2/mosaic/inst/tests/test-evalFormula.R |only
mosaic-0.6-2/mosaic/inst/tests/test-findZeros.R | 52 +++
mosaic-0.6-2/mosaic/inst/tests/test-symbolicInt.R |only
mosaic-0.6-2/mosaic/man/Actors.Rd | 2
mosaic-0.6-2/mosaic/man/Baby.Rd | 4
mosaic-0.6-2/mosaic/man/Births78.Rd | 2
mosaic-0.6-2/mosaic/man/Birthweight.Rd | 2
mosaic-0.6-2/mosaic/man/Broyden.Rd |only
mosaic-0.6-2/mosaic/man/Calculus.Rd | 49 +--
mosaic-0.6-2/mosaic/man/Computers.Rd | 6
mosaic-0.6-2/mosaic/man/Depression.Rd | 14 -
mosaic-0.6-2/mosaic/man/Drinks.Rd | 2
mosaic-0.6-2/mosaic/man/EPA.Rd | 20 -
mosaic-0.6-2/mosaic/man/Flicker.Rd | 4
mosaic-0.6-2/mosaic/man/Friends.Rd | 2
mosaic-0.6-2/mosaic/man/GestationLongevity.Rd |only
mosaic-0.6-2/mosaic/man/Graduation.Rd | 4
mosaic-0.6-2/mosaic/man/Guns.Rd | 2
mosaic-0.6-2/mosaic/man/HELPfull.Rd | 4
mosaic-0.6-2/mosaic/man/Heightweight.Rd | 8
mosaic-0.6-2/mosaic/man/Nightlight.Rd | 4
mosaic-0.6-2/mosaic/man/Olympics.Rd | 4
mosaic-0.6-2/mosaic/man/Population.Rd | 10
mosaic-0.6-2/mosaic/man/Pregnancy.Rd | 2
mosaic-0.6-2/mosaic/man/RailTrail.Rd |only
mosaic-0.6-2/mosaic/man/Ratings.Rd | 4
mosaic-0.6-2/mosaic/man/Seed.Rd | 4
mosaic-0.6-2/mosaic/man/Sleep.Rd | 2
mosaic-0.6-2/mosaic/man/Sleep2.Rd | 4
mosaic-0.6-2/mosaic/man/TV1.Rd | 4
mosaic-0.6-2/mosaic/man/TV2.Rd | 4
mosaic-0.6-2/mosaic/man/Time.Rd | 8
mosaic-0.6-2/mosaic/man/TukeyHSD.Rd |only
mosaic-0.6-2/mosaic/man/aggregating-methods.Rd | 85 +++---
mosaic-0.6-2/mosaic/man/evalFormula.Rd | 6
mosaic-0.6-2/mosaic/man/expandFun.Rd | 3
mosaic-0.6-2/mosaic/man/fetchData.Rd | 87 +++---
mosaic-0.6-2/mosaic/man/findZeros.Rd | 45 ++-
mosaic-0.6-2/mosaic/man/findZerosMult.Rd | 18 -
mosaic-0.6-2/mosaic/man/freqpolygon.Rd |only
mosaic-0.6-2/mosaic/man/panel.lmbands.Rd |only
mosaic-0.6-2/mosaic/man/plotFun.Rd | 2
mosaic-0.6-2/mosaic/man/r.squared.Rd |only
mosaic-0.6-2/mosaic/man/simplify.Rd |only
mosaic-0.6-2/mosaic/man/symbolicInt.Rd |only
mosaic-0.6-2/mosaic/mosaic.Rproj | 3
90 files changed, 1369 insertions(+), 936 deletions(-)
Title: Modified Maximum Contrast Method
Diff between mmcm versions 1.2-2 dated 2011-09-13 and 1.2-3 dated 2012-09-04
Description: This package provides an implementation of modified
maximum contrast methods and the maximum contrast method. This
version supports functions mmcm.mvt, mcm.mvt that gives P-value
by using randomized quasi-Monte Carlo method from pmvt function
of package mvtnorm, and mmcm.resamp that gives P-value by using
the permutation method.
Author: Kengo NAGASHIMA and Yasunori SATO
Maintainer: Kengo NAGASHIMA
DESCRIPTION | 9 ++---
MD5 | 22 ++++++------
NEWS | 79 ++++++++++++++++++++++++++++++++------------
R/mcm.mvt.R | 26 +++++++-------
R/mmcm.mvt.R | 24 ++++++-------
R/mmcm.resamp.R | 26 +++++++-------
man/mcm.mvt.Rd | 94 ++++++++++++++++++++++++++---------------------------
man/mmcm.mvt.Rd | 92 +++++++++++++++++++++++++--------------------------
man/mmcm.resamp.Rd | 94 ++++++++++++++++++++++++++---------------------------
man/print.mmcm.Rd | 2 -
src/Makevars | 2 -
src/mmcm.resamp.c | 21 +++--------
12 files changed, 261 insertions(+), 230 deletions(-)
Title: Graphical Analysis of Variance Using ggplot2
Diff between granovaGG versions 1.1 dated 2012-02-25 and 1.2 dated 2012-09-04
Description: This collection of functions in granovaGG provides what we
call elemental graphics for display of anova results. The term
elemental derives from the fact that each function is aimed at
construction of graphical displays that afford direct
visualizations of data with respect to the fundamental
questions that drive the particular anova methods. This package
represents a modification of the original granova package; the
key change is to use ggplot2, Hadley Wickham's package based on
Grammar of Graphics concepts (due to Wilkinson). The main
function is granovagg.1w (a graphic for one way anova); two
other functions (granovagg.ds and granovagg.contr) are to
construct graphics for dependent sample analyses and
contrast-based analyses respectively. (The function granova.2w,
which entails dynamic displays of data, is not currently part
of granovaGG.) The granovaGG functions are to display data for
any number of groups, regardless of their sizes (however, very
large data sets or numbers of groups can be problematic). For
granovagg.1w a specialized approach is used to construct
data-based contrast vectors for which anova data are displayed.
The result is that the graphics use a straight line to
facilitate clear interpretations while being faithful to the
standard effect test in anova. The graphic results are
complementary to standard summary tables; indeed, numerical
summary statistics are provided as side effects of the graphic
constructions. granovagg.ds and granovagg.contr provide graphic
displays and numerical outputs for a dependent sample and
contrast-based analyses. The graphics based on these functions
can be especially helpful for learning how the respective
methods work to answer the basic question(s) that drive the
analyses. This means they can be particularly helpful for
students and non-statistician analysts. But these methods can
be of assistance for work-a-day applications of many kinds, as
they can help to identify outliers, clusters or patterns, as
well as highlight the role of non-linear transformations of
data. In the case of granovagg.1w and granovagg.ds several
arguments are provided to facilitate flexibility in the
construction of graphics that accommodate diverse features of
data, according to their corresponding display requirements.
See the help files for individual functions.
Author: Brian A. Danielak
Maintainer: Brian A. Danielak
granovaGG-1.1/granovaGG/.Rapp.history |only
granovaGG-1.1/granovaGG/.gitignore |only
granovaGG-1.1/granovaGG/R/geom_rug_alt.R |only
granovaGG-1.1/granovaGG/demo/geom_rug_alt.R |only
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granovaGG-1.2/granovaGG/MD5 | 32 -
granovaGG-1.2/granovaGG/NAMESPACE | 2
granovaGG-1.2/granovaGG/NEWS | 23 -
granovaGG-1.2/granovaGG/R/granovaGG-package.R | 118 ++---
granovaGG-1.2/granovaGG/R/granovagg.1w-helpers.R | 117 ++++-
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granovaGG-1.2/granovaGG/R/granovagg.contr.R | 176 ++++----
granovaGG-1.2/granovaGG/R/granovagg.ds.R | 228 +++++-----
granovaGG-1.2/granovaGG/R/theme-defaults.R | 118 ++---
granovaGG-1.2/granovaGG/demo/00Index | 1
granovaGG-1.2/granovaGG/inst/tests/test-granovagg.1w.R | 9
granovaGG-1.2/granovaGG/man/granovaGG-package.Rd | 2
granovaGG-1.2/granovaGG/man/granovagg.1w.Rd | 3
granovaGG-1.2/granovaGG/man/granovagg.ds.Rd | 2
21 files changed, 607 insertions(+), 606 deletions(-)
Title: An implementation of the Grammar of Graphics
Diff between ggplot2 versions 0.9.1 dated 2012-05-08 and 0.9.2 dated 2012-09-04
Description: An implementation of the grammar of graphics in R. It
combines the advantages of both base and lattice graphics:
conditioning and shared axes are handled automatically, and you
can still build up a plot step by step from multiple data
sources. It also implements a sophisticated multidimensional
conditioning system and a consistent interface to map data to
aesthetic attributes. See the ggplot2 website for more
information, documentation and examples.
Author: Hadley Wickham
Maintainer: Hadley Wickham
ggplot2-0.9.1/ggplot2/.gitignore |only
ggplot2-0.9.1/ggplot2/R/utilities-table-template.r |only
ggplot2-0.9.1/ggplot2/inst/tests/test-table-layout.r |only
ggplot2-0.9.1/ggplot2/man/ggplot-add.Rd |only
ggplot2-0.9.1/ggplot2/man/gtable.Rd |only
ggplot2-0.9.1/ggplot2/man/theme_line.Rd |only
ggplot2-0.9.1/ggplot2/man/theme_rect.Rd |only
ggplot2-0.9.1/ggplot2/man/theme_segment.Rd |only
ggplot2-0.9.1/ggplot2/man/theme_text.Rd |only
ggplot2-0.9.1/ggplot2/man/xlim.Rd |only
ggplot2-0.9.1/ggplot2/man/ylim.Rd |only
ggplot2-0.9.1/ggplot2/visual_test |only
ggplot2-0.9.2/ggplot2/DESCRIPTION | 35
ggplot2-0.9.2/ggplot2/MD5 | 1445 +----------
ggplot2-0.9.2/ggplot2/NAMESPACE | 375 +-
ggplot2-0.9.2/ggplot2/NEWS | 127
ggplot2-0.9.2/ggplot2/R/aaa-.r | 72
ggplot2-0.9.2/ggplot2/R/aes.r | 6
ggplot2-0.9.2/ggplot2/R/annotation-custom.r | 2
ggplot2-0.9.2/ggplot2/R/annotation-logticks.r | 9
ggplot2-0.9.2/ggplot2/R/annotation-map.r | 10
ggplot2-0.9.2/ggplot2/R/annotation.r | 54
ggplot2-0.9.2/ggplot2/R/autoplot.r | 6
ggplot2-0.9.2/ggplot2/R/coord-.r | 2
ggplot2-0.9.2/ggplot2/R/coord-cartesian-.r | 8
ggplot2-0.9.2/ggplot2/R/coord-fixed.r | 2
ggplot2-0.9.2/ggplot2/R/coord-flip.r | 10
ggplot2-0.9.2/ggplot2/R/coord-map.r | 18
ggplot2-0.9.2/ggplot2/R/coord-munch.r | 108
ggplot2-0.9.2/ggplot2/R/coord-polar.r | 38
ggplot2-0.9.2/ggplot2/R/coord-transform.r | 14
ggplot2-0.9.2/ggplot2/R/facet-grid-.r | 27
ggplot2-0.9.2/ggplot2/R/facet-labels.r | 4
ggplot2-0.9.2/ggplot2/R/facet-layout.r | 2
ggplot2-0.9.2/ggplot2/R/facet-locate.r | 1
ggplot2-0.9.2/ggplot2/R/facet-null.r | 13
ggplot2-0.9.2/ggplot2/R/facet-wrap.r | 26
ggplot2-0.9.2/ggplot2/R/fortify-spatial.r | 61
ggplot2-0.9.2/ggplot2/R/geom-abline.r | 4
ggplot2-0.9.2/ggplot2/R/geom-bar-.r | 8
ggplot2-0.9.2/ggplot2/R/geom-bar-histogram.r | 15
ggplot2-0.9.2/ggplot2/R/geom-bin2d.r | 3
ggplot2-0.9.2/ggplot2/R/geom-blank.r | 6
ggplot2-0.9.2/ggplot2/R/geom-boxplot.r | 14
ggplot2-0.9.2/ggplot2/R/geom-crossbar.r | 10
ggplot2-0.9.2/ggplot2/R/geom-dotplot.r | 10
ggplot2-0.9.2/ggplot2/R/geom-error.r | 11
ggplot2-0.9.2/ggplot2/R/geom-errorh.r | 11
ggplot2-0.9.2/ggplot2/R/geom-freqpoly.r | 8
ggplot2-0.9.2/ggplot2/R/geom-hex.r | 3
ggplot2-0.9.2/ggplot2/R/geom-hline.r | 5
ggplot2-0.9.2/ggplot2/R/geom-linerange.r | 5
ggplot2-0.9.2/ggplot2/R/geom-map.r | 9
ggplot2-0.9.2/ggplot2/R/geom-path-.r | 8
ggplot2-0.9.2/ggplot2/R/geom-path-contour.r | 9
ggplot2-0.9.2/ggplot2/R/geom-path-density2d.r | 7
ggplot2-0.9.2/ggplot2/R/geom-path-line.r | 8
ggplot2-0.9.2/ggplot2/R/geom-path-step.r | 10
ggplot2-0.9.2/ggplot2/R/geom-point-.r | 20
ggplot2-0.9.2/ggplot2/R/geom-point-jitter.r | 8
ggplot2-0.9.2/ggplot2/R/geom-pointrange.r | 10
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ggplot2-0.9.2/ggplot2/R/geom-quantile.r | 13
ggplot2-0.9.2/ggplot2/R/geom-raster.r | 12
ggplot2-0.9.2/ggplot2/R/geom-rect.r | 8
ggplot2-0.9.2/ggplot2/R/geom-ribbon-.r | 13
ggplot2-0.9.2/ggplot2/R/geom-ribbon-density.r | 12
ggplot2-0.9.2/ggplot2/R/geom-rug.r | 3
ggplot2-0.9.2/ggplot2/R/geom-segment.r | 10
ggplot2-0.9.2/ggplot2/R/geom-smooth.r | 10
ggplot2-0.9.2/ggplot2/R/geom-text.r | 4
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ggplot2-0.9.2/ggplot2/R/ggplot2.r | 33
ggplot2-0.9.2/ggplot2/R/grob-absolute.r | 5
ggplot2-0.9.2/ggplot2/R/grob-null.r | 1
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ggplot2-0.9.2/ggplot2/R/theme-defaults.r | 115
ggplot2-0.9.2/ggplot2/R/theme-elements.r | 372 ++
ggplot2-0.9.2/ggplot2/R/theme.r | 633 +++-
ggplot2-0.9.2/ggplot2/R/translate-qplot-base.r | 6
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271 files changed, 3266 insertions(+), 3192 deletions(-)
Title: Data Cloning and MCMC Tools for Maximum Likelihood Methods
Diff between dclone versions 1.8-0 dated 2012-07-07 and 1.8-1 dated 2012-09-04
Description: Low level functions for implementing maximum likelihood
estimating procedures for complex models using data cloning and
Bayesian Markov chain Monte Carlo methods with support for
JAGS, WinBUGS and OpenBUGS. Parallel MCMC computation is
supported and can result in considerable speed-up.
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/dcFit.R | 7 +++++++
R/plotClusterSize.R | 2 +-
inst/ChangeLog | 6 ++++++
5 files changed, 22 insertions(+), 9 deletions(-)
Title: Command pattern in R
Diff between commandr versions 0.9.3 dated 2012-08-30 and 0.9.5 dated 2012-09-04
Description: An S4 representation of the Command design pattern. The
Operation class is a simple implementation using closures and
supports forward and reverse (undo) evaluation. The more
complicated Protocol framework represents each type of command
(or analytical protocol) by a formal S4 class. Commands may be
grouped and consecutively executed using the Pipeline class.
Example use cases include logging, do/undo, analysis pipelines,
GUI actions, parallel processing, etc.
Author: Michael Lawrence
Maintainer: Tengfei Yin
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
inst/doc/intro.pdf |binary
3 files changed, 6 insertions(+), 6 deletions(-)