Title: R/GNU Linear Programming Kit Interface
Diff between Rglpk versions 0.3-8 dated 2012-01-16 and 0.3-9 dated 2012-09-05
Description: R interface to the GNU Linear Programming Kit (GLPK
version 4.47 is shipped with the source package). GLPK is open
source software for solving large-scale linear programming
(LP), mixed integer linear programming (MILP) and other related
problems.
Author: Kurt Hornik [aut], Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl
DESCRIPTION | 24 +++++++++-------
MD5 | 71 +++++++++++++++++++++++++++++++++++++++++++------
R/Rglpk_solve.R | 5 +++
R/filereader.R | 35 +++++++++++++++++++++---
R/milp.R | 4 +-
inst/mod |only
inst/mps |only
man/Rglpk_read_file.Rd | 21 ++++++++++----
man/Rglpk_solve.Rd | 19 +++++++++++++
src/Rglpk.h | 1
src/Rglpk_read_file.c | 45 ++++++++++++++++++++++---------
11 files changed, 183 insertions(+), 42 deletions(-)
Title: A package of functions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Diff between wavelets versions 0.2-7 dated 2012-07-03 and 0.2-8 dated 2012-09-05
Description: This package contains functions for computing and plotting
discrete wavelet transforms (DWT) and maximal overlap discrete
wavelet transforms (MODWT), as well as their inverses.
Additionally, it contains functionality for computing and
plotting wavelet transform filters that are used in the above
decompositions as well as multiresolution analyses.
Author: Eric Aldrich
Maintainer: Eric Aldrich
DESCRIPTION | 10 +++++-----
MD5 | 2 +-
2 files changed, 6 insertions(+), 6 deletions(-)
Title: Co-Clustering package for Binary, Contingency and Continuous
data-sets.
Diff between blockcluster versions 1.0 dated 2012-07-04 and 1.01 dated 2012-09-05
Description: Simultaneous clustering of rows and columns, usually
designated by biclustering, co-clustering or block clustering,
is an important technique in two way data analysis. It consists
of estimating a mixture model which takes into account the
block clustering problem on both the individual and variables
sets. The blockcluster package provides a bridge between the
C++ core library and the R statistical computing environment.
This package allows to co-cluster Binary, contingency and
continuous data-sets. It also provides utility functions to
visualize the results. This package may be useful for various
applications in fields of Data mining,Information retrieval,
Biology, computer vision and many more.
Author: Parmeet Bhatia & Serge Iovleff & Gerard Goavert, with
contributions from Christophe Biernacki and Gilles Celeux.
Maintainer: Parmeet Singh Bhatia
blockcluster-1.0/blockcluster/.cproject |only
blockcluster-1.0/blockcluster/.project |only
blockcluster-1.0/blockcluster/src/coclust/.gitignore |only
blockcluster-1.01/blockcluster/DESCRIPTION | 25
blockcluster-1.01/blockcluster/MD5 | 38
blockcluster-1.01/blockcluster/R/Rcoclust.R | 23
blockcluster-1.01/blockcluster/R/Strategy.R | 1
blockcluster-1.01/blockcluster/R/cocluster.R | 16
blockcluster-1.01/blockcluster/R/onload.R | 2
blockcluster-1.01/blockcluster/R/plot.R | 710 +++++-----
blockcluster-1.01/blockcluster/R/summary.R | 21
blockcluster-1.01/blockcluster/data/binarydata.rda |binary
blockcluster-1.01/blockcluster/data/contingencydatalist.rda |binary
blockcluster-1.01/blockcluster/data/contingencydataunknown.rda |binary
blockcluster-1.01/blockcluster/data/gaussiandata.rda |binary
blockcluster-1.01/blockcluster/man/blockcluster.Rd | 26
blockcluster-1.01/blockcluster/man/cocluster.Rd | 31
blockcluster-1.01/blockcluster/man/cocluststrategy.Rd | 1
blockcluster-1.01/blockcluster/man/plot-methods.Rd | 14
blockcluster-1.01/blockcluster/src/BinaryCoClust.cpp | 8
blockcluster-1.01/blockcluster/src/ContingencyCoClust.cpp | 8
blockcluster-1.01/blockcluster/src/ContinuousCoClust.cpp | 8
blockcluster-1.01/blockcluster/src/coclust/src/Models/BinaryLBModel.cpp | 4
23 files changed, 485 insertions(+), 451 deletions(-)
Title: Parametric bootstrap and Kenward Roger based methods for mixed
model comparison
Diff between pbkrtest versions 0.3-1 dated 2012-04-24 and 0.3-2 dated 2012-09-05
Description: Test in linear mixed effects models based on parametric
bootstrap approaches and Kenward-Roger modification of F-tests
Author: Ulrich Halekoh
Maintainer: Søren Højsgaard
pbkrtest-0.3-1/pbkrtest/man/parbokenro-internal.Rd |only
pbkrtest-0.3-2/pbkrtest/ChangeLog | 14
pbkrtest-0.3-2/pbkrtest/DESCRIPTION | 13
pbkrtest-0.3-2/pbkrtest/MD5 | 32 -
pbkrtest-0.3-2/pbkrtest/R/KenRog-General.R | 238 ++++-----
pbkrtest-0.3-2/pbkrtest/R/KenRog-linearAlgebra.R | 136 ++---
pbkrtest-0.3-2/pbkrtest/R/KenRog-modcomp_init.R | 5
pbkrtest-0.3-2/pbkrtest/R/KenRog-utils.R | 6
pbkrtest-0.3-2/pbkrtest/R/PB_ParmBoot.R | 516 +++++----------------
pbkrtest-0.3-2/pbkrtest/R/PB_refdist.R |only
pbkrtest-0.3-2/pbkrtest/R/PB_utils.R |only
pbkrtest-0.3-2/pbkrtest/data/budworm.txt.gz |only
pbkrtest-0.3-2/pbkrtest/man/KenRog-modcomp_init.Rd | 9
pbkrtest-0.3-2/pbkrtest/man/KenRog.Rd | 16
pbkrtest-0.3-2/pbkrtest/man/PB_PBmodcomp.Rd | 21
pbkrtest-0.3-2/pbkrtest/man/PB_PBrefdist.Rd | 11
pbkrtest-0.3-2/pbkrtest/man/budworm.Rd |only
pbkrtest-0.3-2/pbkrtest/man/pbkrtest-internal.Rd |only
pbkrtest-0.3-2/pbkrtest/man/vcovAdj.Rd | 19
pbkrtest-0.3-2/pbkrtest/pbkrtest-Ex.R | 373 ++++++++-------
20 files changed, 615 insertions(+), 794 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 1.0-7 dated 2012-06-16 and 1.0-9 dated 2012-09-05
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates
Maintainer: Martin Maechler
Matrix-1.0-7/Matrix/inst/doc/UFsparse |only
Matrix-1.0-7/Matrix/src/UFconfig |only
Matrix-1.0-9/Matrix/ChangeLog | 61 +
Matrix-1.0-9/Matrix/DESCRIPTION | 11
Matrix-1.0-9/Matrix/Done | 3
Matrix-1.0-9/Matrix/MD5 | 454 +++++-----
Matrix-1.0-9/Matrix/NAMESPACE | 11
Matrix-1.0-9/Matrix/R/AllClass.R | 10
Matrix-1.0-9/Matrix/R/AllGeneric.R | 3
Matrix-1.0-9/Matrix/R/Auxiliaries.R | 95 +-
Matrix-1.0-9/Matrix/R/CHMfactor.R | 20
Matrix-1.0-9/Matrix/R/Csparse.R | 4
Matrix-1.0-9/Matrix/R/HBMM.R | 19
Matrix-1.0-9/Matrix/R/Matrix.R | 3
Matrix-1.0-9/Matrix/R/Ops.R | 241 +++--
Matrix-1.0-9/Matrix/R/Tsparse.R | 16
Matrix-1.0-9/Matrix/R/abIndex.R | 6
Matrix-1.0-9/Matrix/R/bandSparse.R | 2
Matrix-1.0-9/Matrix/R/bind2.R | 2
Matrix-1.0-9/Matrix/R/dMatrix.R | 12
Matrix-1.0-9/Matrix/R/ddenseMatrix.R | 47 -
Matrix-1.0-9/Matrix/R/dgeMatrix.R | 6
Matrix-1.0-9/Matrix/R/diagMatrix.R | 373 +++++---
Matrix-1.0-9/Matrix/R/dspMatrix.R | 8
Matrix-1.0-9/Matrix/R/dsparseMatrix.R | 26
Matrix-1.0-9/Matrix/R/dsyMatrix.R | 10
Matrix-1.0-9/Matrix/R/dtpMatrix.R | 12
Matrix-1.0-9/Matrix/R/dtrMatrix.R | 6
Matrix-1.0-9/Matrix/R/lMatrix.R | 7
Matrix-1.0-9/Matrix/R/ldenseMatrix.R | 64 +
Matrix-1.0-9/Matrix/R/nnzero.R | 9
Matrix-1.0-9/Matrix/R/pMatrix.R | 3
Matrix-1.0-9/Matrix/R/sparseMatrix.R | 4
Matrix-1.0-9/Matrix/R/sparseVector.R | 38
Matrix-1.0-9/Matrix/R/symmetricMatrix.R | 57 +
Matrix-1.0-9/Matrix/TODO | 11
Matrix-1.0-9/Matrix/inst/doc/Comparisons.pdf |binary
Matrix-1.0-9/Matrix/inst/doc/Design-issues.pdf |binary
Matrix-1.0-9/Matrix/inst/doc/Intro2Matrix.pdf |binary
Matrix-1.0-9/Matrix/inst/doc/Introduction.pdf |binary
Matrix-1.0-9/Matrix/inst/doc/SuiteSparse |only
Matrix-1.0-9/Matrix/inst/doc/sparseModels.Rnw | 38
Matrix-1.0-9/Matrix/inst/doc/sparseModels.pdf |binary
Matrix-1.0-9/Matrix/inst/po/de/LC_MESSAGES/Matrix.mo |binary
Matrix-1.0-9/Matrix/inst/po/de/LC_MESSAGES/R-Matrix.mo |binary
Matrix-1.0-9/Matrix/inst/po/en@quot/LC_MESSAGES/Matrix.mo |binary
Matrix-1.0-9/Matrix/inst/po/en@quot/LC_MESSAGES/R-Matrix.mo |binary
Matrix-1.0-9/Matrix/inst/po/pl |only
Matrix-1.0-9/Matrix/inst/test-tools-Matrix.R | 67 +
Matrix-1.0-9/Matrix/inst/test-tools.R | 3
Matrix-1.0-9/Matrix/man/CHMfactor-class.Rd | 44
Matrix-1.0-9/Matrix/man/Diagonal.Rd | 4
Matrix-1.0-9/Matrix/man/abIndex-class.Rd | 1
Matrix-1.0-9/Matrix/man/dgeMatrix-class.Rd | 1
Matrix-1.0-9/Matrix/man/diagU2N.Rd | 24
Matrix-1.0-9/Matrix/man/diagonalMatrix-class.Rd | 20
Matrix-1.0-9/Matrix/man/dsyMatrix-class.Rd | 9
Matrix-1.0-9/Matrix/man/dtpMatrix-class.Rd | 7
Matrix-1.0-9/Matrix/man/dtrMatrix-class.Rd | 5
Matrix-1.0-9/Matrix/man/externalFormats.Rd | 4
Matrix-1.0-9/Matrix/man/is.na-methods.Rd | 38
Matrix-1.0-9/Matrix/man/lgeMatrix-class.Rd | 1
Matrix-1.0-9/Matrix/man/lsyMatrix-class.Rd | 4
Matrix-1.0-9/Matrix/man/ltrMatrix-class.Rd | 2
Matrix-1.0-9/Matrix/man/ndenseMatrix-class.Rd | 4
Matrix-1.0-9/Matrix/man/ngeMatrix-class.Rd | 1
Matrix-1.0-9/Matrix/man/nsyMatrix-class.Rd | 2
Matrix-1.0-9/Matrix/man/ntrMatrix-class.Rd | 2
Matrix-1.0-9/Matrix/man/pMatrix-class.Rd | 1
Matrix-1.0-9/Matrix/man/sparseMatrix.Rd | 21
Matrix-1.0-9/Matrix/man/sparseVector-class.Rd | 16
Matrix-1.0-9/Matrix/man/sparseVector.Rd |only
Matrix-1.0-9/Matrix/man/unpack.Rd | 66 +
Matrix-1.0-9/Matrix/po/Matrix.pot | 190 ++--
Matrix-1.0-9/Matrix/po/R-Matrix.pot | 64 +
Matrix-1.0-9/Matrix/po/R-de.po | 93 +-
Matrix-1.0-9/Matrix/po/R-en@quot.po | 131 +-
Matrix-1.0-9/Matrix/po/R-pl.po |only
Matrix-1.0-9/Matrix/po/de.po | 207 ++--
Matrix-1.0-9/Matrix/po/en@quot.po | 224 ++--
Matrix-1.0-9/Matrix/po/pl.po |only
Matrix-1.0-9/Matrix/po/update-me.sh | 5
Matrix-1.0-9/Matrix/src/AMD/Include/amd.h | 349 +++----
Matrix-1.0-9/Matrix/src/AMD/Include/amd_internal.h | 43
Matrix-1.0-9/Matrix/src/AMD/Source/Makefile | 31
Matrix-1.0-9/Matrix/src/AMD/Source/amd_1.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_2.c | 14
Matrix-1.0-9/Matrix/src/AMD/Source/amd_aat.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_control.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_defaults.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_dump.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_global.c | 5
Matrix-1.0-9/Matrix/src/AMD/Source/amd_info.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_order.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_post_tree.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_postorder.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_preprocess.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/amd_valid.c | 3
Matrix-1.0-9/Matrix/src/AMD/Source/make-Make.R | 6
Matrix-1.0-9/Matrix/src/AMD/Source/make_o.mk | 7
Matrix-1.0-9/Matrix/src/CHMfactor.c | 15
Matrix-1.0-9/Matrix/src/CHOLMOD/Check/License.txt | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Check/cholmod_check.c | 117 +-
Matrix-1.0-9/Matrix/src/CHOLMOD/Check/cholmod_read.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/License.txt | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_amd.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_analyze.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_colamd.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_etree.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_factorize.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_postorder.c | 3
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_rcond.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_resymbol.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_rowcolcounts.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_rowfac.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_solve.c | 5
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/cholmod_spsolve.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/t_cholmod_lsolve.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/t_cholmod_ltsolve.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/t_cholmod_rowfac.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Cholesky/t_cholmod_solve.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/License.txt | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_aat.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_add.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_band.c | 13
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_change_factor.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_common.c | 33
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_complex.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_copy.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_dense.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_error.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_factor.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_memory.c | 7
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_sparse.c | 3
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_transpose.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/cholmod_triplet.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/t_cholmod_change_factor.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/t_cholmod_dense.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/t_cholmod_transpose.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Core/t_cholmod_triplet.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/License.txt | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/README.txt | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod.h | 11
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_blas.h | 3
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_check.h | 29
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_cholesky.h | 52 -
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_config.h | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_core.h | 184 ++--
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_internal.h | 88 +
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_io64.h | 3
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_matrixops.h | 16
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_modify.h | 20
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_partition.h | 54 -
Matrix-1.0-9/Matrix/src/CHOLMOD/Include/cholmod_supernodal.h | 8
Matrix-1.0-9/Matrix/src/CHOLMOD/Lib/Makefile | 3
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/License.txt | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_drop.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_horzcat.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_norm.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_scale.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_sdmult.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_ssmult.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_submatrix.c | 6
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_symmetry.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/cholmod_vertcat.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/MatrixOps/t_cholmod_sdmult.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Modify/License.txt | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Modify/cholmod_rowadd.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Modify/cholmod_rowdel.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Modify/cholmod_updown.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Modify/t_cholmod_updown.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Modify/t_cholmod_updown_numkr.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Partition/License.txt | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Partition/cholmod_camd.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Partition/cholmod_ccolamd.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Partition/cholmod_csymamd.c | 1
Matrix-1.0-9/Matrix/src/CHOLMOD/Partition/cholmod_metis.c | 9
Matrix-1.0-9/Matrix/src/CHOLMOD/Partition/cholmod_nesdis.c | 12
Matrix-1.0-9/Matrix/src/CHOLMOD/Supernodal/License.txt | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Supernodal/cholmod_super_numeric.c | 13
Matrix-1.0-9/Matrix/src/CHOLMOD/Supernodal/cholmod_super_solve.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Supernodal/cholmod_super_symbolic.c | 2
Matrix-1.0-9/Matrix/src/CHOLMOD/Supernodal/t_cholmod_gpu.c |only
Matrix-1.0-9/Matrix/src/CHOLMOD/Supernodal/t_cholmod_super_numeric.c | 298 ++++--
Matrix-1.0-9/Matrix/src/CHOLMOD/Supernodal/t_cholmod_super_solve.c | 2
Matrix-1.0-9/Matrix/src/COLAMD/Doc/ChangeLog | 8
Matrix-1.0-9/Matrix/src/COLAMD/Include/colamd.h | 56 -
Matrix-1.0-9/Matrix/src/COLAMD/Source/Makefile | 2
Matrix-1.0-9/Matrix/src/COLAMD/Source/colamd.c | 53 -
Matrix-1.0-9/Matrix/src/COLAMD/Source/colamd_global.c | 2
Matrix-1.0-9/Matrix/src/Csparse.c | 18
Matrix-1.0-9/Matrix/src/Makevars | 4
Matrix-1.0-9/Matrix/src/Mutils.c | 116 ++
Matrix-1.0-9/Matrix/src/Mutils.h | 15
Matrix-1.0-9/Matrix/src/SuiteSparse_config |only
Matrix-1.0-9/Matrix/src/chm_common.h | 2
Matrix-1.0-9/Matrix/src/cs.c | 377 ++++----
Matrix-1.0-9/Matrix/src/cs.h | 167 +--
Matrix-1.0-9/Matrix/src/dense.c | 13
Matrix-1.0-9/Matrix/src/dgCMatrix.c | 4
Matrix-1.0-9/Matrix/src/dgeMatrix.c | 55 +
Matrix-1.0-9/Matrix/src/dgeMatrix.h | 3
Matrix-1.0-9/Matrix/src/dspMatrix.c | 34
Matrix-1.0-9/Matrix/src/dspMatrix.h | 4
Matrix-1.0-9/Matrix/src/dsyMatrix.c | 3
Matrix-1.0-9/Matrix/src/dtpMatrix.c | 26
Matrix-1.0-9/Matrix/src/dtpMatrix.h | 4
Matrix-1.0-9/Matrix/src/dtrMatrix.c | 39
Matrix-1.0-9/Matrix/src/dtrMatrix.h | 3
Matrix-1.0-9/Matrix/src/init.c | 13
Matrix-1.0-9/Matrix/src/ldense.c | 13
Matrix-1.0-9/Matrix/src/scripts/CSparse_install.sh | 1
Matrix-1.0-9/Matrix/src/scripts/DEPS.mkf | 20
Matrix-1.0-9/Matrix/src/scripts/DEPS.mkf_make.sh | 6
Matrix-1.0-9/Matrix/src/scripts/UFsparse_download.sh | 32
Matrix-1.0-9/Matrix/tests/Class+Meth.R | 7
Matrix-1.0-9/Matrix/tests/Simple.R | 94 +-
Matrix-1.0-9/Matrix/tests/dg_Matrix.R | 1
Matrix-1.0-9/Matrix/tests/dpo-test.R | 9
Matrix-1.0-9/Matrix/tests/factorizing.R | 42
Matrix-1.0-9/Matrix/tests/group-methods.R | 142 ++-
Matrix-1.0-9/Matrix/tests/indexing.R | 19
Matrix-1.0-9/Matrix/tests/indexing.Rout.save | 351 +------
Matrix-1.0-9/Matrix/tests/matprod.R | 2
Matrix-1.0-9/Matrix/tests/validObj.R | 2
225 files changed, 3864 insertions(+), 2429 deletions(-)
Title: Six Sigma Tools for Quality and Process Improvement
Diff between SixSigma versions 0.6.2 dated 2012-08-18 and 0.6.3 dated 2012-09-05
Description: This package contains functions and utilities to perform
Statistical Analyses in the Six Sigma way. Through the DMAIC
cycle (Define, Measure, Analyze, Improve, Control), you can
manage several Quality Management studies: Gage R&R, Capability
Analysis, Control Charts, Loss Function Analysis, etc. Data
frames used in the book "Six Sigma with R" (Springer, 2012) are
also included in the package.
Author: Emilio L. Cano and Javier M. Moguerza and Andres Redchuk
Maintainer: Emilio L. Cano
DESCRIPTION | 10 +++++-----
MD5 | 18 +++++++++---------
NAMESPACE | 17 ++++++++---------
NEWS | 5 +++++
R/ss.ca.R | 7 ++++---
R/ss.ci.R | 9 +++++----
inst/doc/HelicopterInstructions.Rnw | 2 +-
inst/doc/HelicopterInstructions.pdf |binary
man/SixSigma-package.Rd | 9 +++------
vignettes/HelicopterInstructions.Rnw | 2 +-
10 files changed, 41 insertions(+), 38 deletions(-)
Title: Moment and Inverse Moment Bayes factors
Diff between mombf versions 1.3.4 dated 2012-01-04 and 1.3.5 dated 2012-09-05
Description: This package performs model selection based on non-local
priors, including MOM, eMOM and iMOM priors. Routines are
provided to compute Bayes factors, marginal densities and to
perform variable selection in regression setups. Routines to
evaluate prior densities, distribution functions, quantiles and
modes are included.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell
mombf-1.3.4/mombf/inst/doc/auto |only
mombf-1.3.4/mombf/inst/doc/references.bib |only
mombf-1.3.5/mombf/DESCRIPTION | 17 +++++++++++------
mombf-1.3.5/mombf/MD5 | 19 ++++++++++---------
mombf-1.3.5/mombf/R/zellnerLM.R |only
mombf-1.3.5/mombf/changeLog | 3 +++
mombf-1.3.5/mombf/data/hald.rda |binary
mombf-1.3.5/mombf/inst/doc/mombf.pdf |binary
mombf-1.3.5/mombf/src/cstat.c | 22 ++++++++++++++--------
mombf-1.3.5/mombf/src/cstat.h | 5 +++--
mombf-1.3.5/mombf/src/modelSel.c | 2 +-
mombf-1.3.5/mombf/vignettes |only
12 files changed, 42 insertions(+), 26 deletions(-)
Title: Graphical user interface for package sdcMicro
Diff between sdcMicroGUI versions 0.1 dated 2010-12-03 and 0.9 dated 2012-09-05
Description: A graphical user interface based on top of the sdcMicro
package to generate anonymized data set. The graphical user
interface provides full reproducibility of any result via the
script menu in the GUI.
Author: Alexander Kowarik, Matthias Templ, Bernhard Meindl
Maintainer: Matthias Templ
DESCRIPTION | 16
MD5 |only
NAMESPACE | 3
R/plot.indivRisk.r |only
R/sdcGUI.r | 3683 +++++++++++++++++++++++++++++++-------------------
R/zzz.r | 5
man/plot.indivRisk.Rd |only
7 files changed, 2341 insertions(+), 1366 deletions(-)
Title: Quantile Regression
Diff between quantreg versions 4.85 dated 2012-09-03 and 4.90 dated 2012-09-05
Description: Quantile regression and related methods.
Author: Roger Koenker
Maintainer: Roger Koenker
DESCRIPTION | 10 +++----
MD5 | 14 +++++-----
R/crq.R | 7 ++---
inst/ChangeLog | 16 +++++++++++
inst/doc/engelcoef.pdf |binary
inst/doc/rq.pdf |binary
src/crq.f | 66 ++++++++++++++++++++++++-------------------------
src/rq1.f | 31 ++++++++---------------
8 files changed, 76 insertions(+), 68 deletions(-)
Title: Functions to compute and plot tracheidograms
Diff between tgram versions 0.1 dated 2010-04-02 and 0.2-0 dated 2012-09-05
Description: Functions to compute and plot tracheidograms
Author: Marcelino de la Cruz and Lucia DeSoto
Maintainer: Marcelino de la Cruz
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
inst |only
4 files changed, 4 insertions(+), 4 deletions(-)
Title: Matrix population models
Diff between Rramas versions 0.1-1 dated 2011-08-05 and 0.1-2 dated 2012-09-05
Description: Analyzes and predicts from matrix population models in the
way of the Ramas (c) software
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
R/estambi.R | 2 +-
R/project1.R | 12 ++++++------
R/projectn.R | 2 +-
man/as.tmatrix.Rd | 6 ++++--
man/coryphanthaA.Rd | 1 +
man/decline.Rd | 2 +-
man/projectn.Rd | 8 +++++---
10 files changed, 23 insertions(+), 18 deletions(-)
Title: Missing Data Imputation and Model Checking
Diff between mi versions 0.09-16 dated 2012-01-19 and 0.09-18 dated 2012-09-05
Description: Missing-data imputation and model checking
Author: Andrew Gelman
Maintainer: Yu-Sung Su
CHANGELOG | 6 +++++-
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
R/mi.R | 6 +++---
man/convergence.plot.Rd | 12 ++++++++----
man/mi.Rd | 6 +++---
man/mi.completed.Rd | 12 ++++++------
man/mi.hist.Rd | 4 ++--
man/plot.mi.Rd | 9 ++++++---
9 files changed, 45 insertions(+), 34 deletions(-)
Title: JGR - Java Gui for R
Diff between JGR versions 1.7-9 dated 2011-11-17 and 1.7-10 dated 2012-09-05
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR's website:
http://rforge.net/JGR/
Author: Markus Helbig
Maintainer: Markus Helbig
DESCRIPTION | 13 +++++++---
MD5 | 13 +++++-----
NAMESPACE |only
NEWS | 5 ++++
R/JGR.R | 27 +++++++++++-----------
inst/java/JGR.jar |binary
launcher/macosx/JGR_App.xcodeproj/project.pbxproj | 18 ++++++++------
man/supplements.Rd | 2 -
8 files changed, 47 insertions(+), 31 deletions(-)
Title: HRM Diversity Assay Analysis Tool
Diff between DivMelt versions 1.0.1 dated 2012-07-16 and 1.0.2 dated 2012-09-05
Description: This package has tools for analyzing DNA melting data to
generate HRM scores, the DNA diversity measure output of the
HRM Diversity Assay. For additional documentation visit
http://code.google.com/p/divmelt/.
Author: David Swan
Maintainer: David Swan
DivMelt-1.0.1/DivMelt/data/training.csv |only
DivMelt-1.0.1/DivMelt/inst/doc |only
DivMelt-1.0.2/DivMelt/DESCRIPTION | 11 ++++++-----
DivMelt-1.0.2/DivMelt/MD5 | 11 +++++------
DivMelt-1.0.2/DivMelt/R/processDivMelt.R | 8 ++++++++
DivMelt-1.0.2/DivMelt/data/model.rda |binary
DivMelt-1.0.2/DivMelt/inst/sample_data |only
DivMelt-1.0.2/DivMelt/man/modelDivMelt.Rd | 2 +-
8 files changed, 20 insertions(+), 12 deletions(-)
Title: Deducer
Diff between Deducer versions 0.6-3 dated 2012-03-15 and 0.7-0 dated 2012-09-05
Description: An intuitive, cross-platform graphical data analysis
system. It uses menus and dialogs to guide the user efficiently
through the data manipulation and analysis process, and has an
excel like spreadsheet for easy data frame visualization and
editing. Deducer works best when used with the Java based R GUI
JGR, but the dialogs can be called from the command line.
Dialogs have also been integrated into the Windows Rgui.
Author: Ian Fellows
Maintainer: Ian Fellows
Deducer-0.6-3/Deducer/.DS_Store |only
Deducer-0.6-3/Deducer/._.DS_Store |only
Deducer-0.6-3/Deducer/._DESCRIPTION |only
Deducer-0.6-3/Deducer/._NAMESPACE |only
Deducer-0.6-3/Deducer/._NEWS |only
Deducer-0.6-3/Deducer/inst/java/._quaqua.jar |only
Deducer-0.6-3/Deducer/inst/java/quaqua/.DS_Store |only
Deducer-0.6-3/Deducer/inst/java/quaqua/._.DS_Store |only
Deducer-0.6-3/Deducer/inst/java/quaqua/._libquaqua.jnilib |only
Deducer-0.6-3/Deducer/inst/java/quaqua/._libquaqua64.jnilib |only
Deducer-0.6-3/Deducer/java/.DS_Store |only
Deducer-0.6-3/Deducer/java/._.DS_Store |only
Deducer-0.6-3/Deducer/java/._quaqua.jar |only
Deducer-0.6-3/Deducer/java/quaqua/.DS_Store |only
Deducer-0.6-3/Deducer/java/quaqua/._.DS_Store |only
Deducer-0.6-3/Deducer/java/quaqua/._libquaqua.jnilib |only
Deducer-0.6-3/Deducer/java/quaqua/._libquaqua64.jnilib |only
Deducer-0.6-3/Deducer/javasrc/deducer/._Deducer.java |only
Deducer-0.7-0/Deducer/DESCRIPTION | 9
Deducer-0.7-0/Deducer/MD5 | 150 +-
Deducer-0.7-0/Deducer/NAMESPACE | 2
Deducer-0.7-0/Deducer/NEWS | 14
Deducer-0.7-0/Deducer/R/contingency.tables.R | 204 +--
Deducer-0.7-0/Deducer/R/ggcorplot.R | 18
Deducer-0.7-0/Deducer/R/onesample.plot.R | 15
Deducer-0.7-0/Deducer/R/oneway.plot.R | 4
Deducer-0.7-0/Deducer/R/plot.cor.matrix.R | 8
Deducer-0.7-0/Deducer/R/qscatter_array.R | 2
Deducer-0.7-0/Deducer/R/rocplot.R | 2
Deducer-0.7-0/Deducer/R/zzz.R | 44
Deducer-0.7-0/Deducer/inst/java/deducer.jar |binary
Deducer-0.7-0/Deducer/javasrc/deducer/Deducer.java | 152 ++
Deducer-0.7-0/Deducer/javasrc/deducer/GDPreviewJPanel.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/data/CopyPasteAdapter.java | 60
Deducer-0.7-0/Deducer/javasrc/deducer/data/DataView.java | 143 +-
Deducer-0.7-0/Deducer/javasrc/deducer/data/DataViewerController.java | 2
Deducer-0.7-0/Deducer/javasrc/deducer/data/ExDefaultTableModel.java | 28
Deducer-0.7-0/Deducer/javasrc/deducer/data/ExTable.java | 25
Deducer-0.7-0/Deducer/javasrc/deducer/data/RDataFrameModel.java | 631 +++++++---
Deducer-0.7-0/Deducer/javasrc/deducer/data/RDataFrameVariableModel.java | 243 ++-
Deducer-0.7-0/Deducer/javasrc/deducer/data/VariableView.java | 53
Deducer-0.7-0/Deducer/javasrc/deducer/menu/ContingencyDialog.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/menu/CorPlots.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/menu/DescriptivesDialog.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/menu/FactorDialog.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/menu/KSamplePlots.java | 14
Deducer-0.7-0/Deducer/javasrc/deducer/menu/MergeData.java | 22
Deducer-0.7-0/Deducer/javasrc/deducer/menu/OneSampleDialog.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/menu/OneSamplePlots.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/menu/RecodeDialog.java | 2
Deducer-0.7-0/Deducer/javasrc/deducer/menu/SetRecodingsDialog.java | 14
Deducer-0.7-0/Deducer/javasrc/deducer/menu/SubsetDialog.java | 2
Deducer-0.7-0/Deducer/javasrc/deducer/menu/TransformDialog.java | 26
Deducer-0.7-0/Deducer/javasrc/deducer/menu/twosample/SplitDialog.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/menu/twosample/TestOptions.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/models/GLMExplorer.java | 125 +
Deducer-0.7-0/Deducer/javasrc/deducer/models/GLMExplorerMeans.java | 8
Deducer-0.7-0/Deducer/javasrc/deducer/models/GLMExplorerOptions.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/models/GLMExplorerPlots.java | 7
Deducer-0.7-0/Deducer/javasrc/deducer/models/GLMExplorerPostHoc.java | 15
Deducer-0.7-0/Deducer/javasrc/deducer/models/GLMModel.java | 100 -
Deducer-0.7-0/Deducer/javasrc/deducer/models/LinearDialog.java | 3
Deducer-0.7-0/Deducer/javasrc/deducer/models/LinearExplorer.java | 2
Deducer-0.7-0/Deducer/javasrc/deducer/models/LinearExplorerOptions.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/models/LinearModel.java | 34
Deducer-0.7-0/Deducer/javasrc/deducer/models/LogisticDialogSplit.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/models/LogisticDialogSplitModel.java | 16
Deducer-0.7-0/Deducer/javasrc/deducer/models/LogisticExplorer.java | 16
Deducer-0.7-0/Deducer/javasrc/deducer/models/ModelBuilder.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/models/ModelPlotPanel.java | 8
Deducer-0.7-0/Deducer/javasrc/deducer/plots/Aes.java | 2
Deducer-0.7-0/Deducer/javasrc/deducer/plots/AesWidget.java | 22
Deducer-0.7-0/Deducer/javasrc/deducer/plots/DeviceInterface.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/plots/Geom.java | 8
Deducer-0.7-0/Deducer/javasrc/deducer/plots/LegendPanel.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/plots/ParamFactory.java | 16
Deducer-0.7-0/Deducer/javasrc/deducer/plots/PlotBuilderModel.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/plots/PlotController.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/plots/Scale.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/plots/Stat.java | 26
Deducer-0.7-0/Deducer/javasrc/deducer/plots/Theme.java | 370 ++++-
Deducer-0.7-0/Deducer/javasrc/deducer/toolkit/DeducerPrefs.java | 3
Deducer-0.7-0/Deducer/javasrc/deducer/toolkit/DefaultVariableSource.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/toolkit/PrefPanel.java | 8
Deducer-0.7-0/Deducer/javasrc/deducer/toolkit/VariableSelector.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/ObjectChooserWidget.java | 2
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/RDialog.java | 43
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/SimpleRDialog.java | 46
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/SingleVariableWidget.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/VariableListWidget.java | 10
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/param/ParamAny.java | 12
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/param/ParamRObjectComboBoxWidget.java | 4
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/param/RFunctionDialog.java | 9
Deducer-0.7-0/Deducer/javasrc/deducer/widgets/param/RFunctionListDialog.java | 6
94 files changed, 1976 insertions(+), 966 deletions(-)