Mon, 10 Sep 2012

Package rattle updated to version 2.6.21 with previous version 2.6.20 dated 2012-07-23

Title: Graphical user interface for data mining in R
Description: Rattle (the R Analytic Tool To Learn Easily) provides a Gnome (RGtk2) based interface to R functionality for data mining. The aim is to provide a simple and intuitive interface that allows a user to quickly load data from a CSV file (or via ODBC), transform and explore the data, build and evaluate models, and export models as PMML (predictive modelling markup language) or as scores. All of this with knowing little about R. All R commands are logged and commented through the log tab. Thus they are available to the user as a script file or as an aide for the user to learn R or to copy-and-paste directly into R itself. Rattle also exports a number of utility functions and the graphical user interface, invoked as rattle(), does not need to be run to deploy these.
Author: Graham Williams
Maintainer: Graham Williams

Diff between rattle versions 2.6.20 dated 2012-07-23 and 2.6.21 dated 2012-09-10

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Package kequate updated to version 1.1.0 with previous version 1.0.0 dated 2012-08-07

Title: The kernel method of test equating
Description: Implements the kernel method of test equating using the CB, EG, SG, NEAT CE/PSE and NEC designs, supporting gaussian, logistic and uniform kernels and unsmoothed and pre-smoothed input data.
Author: Bjorn Andersson, Kenny Branberg and Marie Wiberg
Maintainer: Bjorn Andersson

Diff between kequate versions 1.0.0 dated 2012-08-07 and 1.1.0 dated 2012-09-10

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Package evdbayes updated to version 1.1-0 with previous version 1.0-8 dated 2010-01-14

Title: Bayesian Analysis in Extreme Value Theory
Description: Provides functions for the bayesian analysis of extreme value models, using MCMC methods.
Author: Alec Stephenson and Mathieu Ribatet.
Maintainer: Mathieu Ribatet

Diff between evdbayes versions 1.0-8 dated 2010-01-14 and 1.1-0 dated 2012-09-10

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Package compareGroups updated to version 1.3 with previous version 1.2 dated 2012-07-11

Title: descriptives by groups
Description: This package is meant to facilitate the construction of bivariate table (descriptives of several variables between groups) and generate reports in LaTeX, HTML or (CSV) plain text. Also, it includes a graphical interface (GUI) to build these tables more easily.
Author: Isaac Subirana, Héctor Sanz, Joan Vila
Maintainer: Isaac Subirana

Diff between compareGroups versions 1.2 dated 2012-07-11 and 1.3 dated 2012-09-10

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Package pROC updated to version 1.5.4 with previous version 1.5.1 dated 2012-03-09

Title: display and analyze ROC curves
Description: Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.
Author: Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez and Markus Müller
Maintainer: Xavier Robin

Diff between pROC versions 1.5.1 dated 2012-03-09 and 1.5.4 dated 2012-09-10

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New package pnmtrem with initial version 1.1
Package: pnmtrem
Type: Package
Title: Probit-Normal Marginalized Transition Random Effects Models
Version: 1.1
Date: 2012-09-10
Author: Ozgur Asar , Ozlem Ilk
Depends: MASS
Maintainer: Ozgur Asar
Description: An R package for Probit-Normal Marginalized Transition Random Effects Models
License: GPL (>= 2)
Packaged: 2012-09-10 07:11:59 UTC; Administrator
Repository: CRAN
Date/Publication: 2012-09-10 09:35:09

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Package ordinal updated to version 2012.09-10 with previous version 2012.01-19 dated 2012-01-20

Title: Regression Models for Ordinal Data
Description: This package implements cumulative link (mixed) models also known as ordered regression models, proportional odds models, proportional hazards models for grouped survival times and ordered logit/probit/... models. Estimation is via maximum likelihood and mixed models are fitted with the Laplace approximation and adaptive Gauss-Hermite quadrature. Multiple random effect terms are allowed and they may be nested, crossed or partially nested/crossed. Restrictions of symmetry and equidistance can be imposed on the thresholds (cut-points). Standard model methods are available (summary, anova, drop-methods, step, confint, predict etc.) in addition to profile methods and slice methods for visualizing the likelihood function and checking convergence.
Author: Rune Haubo B Christensen
Maintainer: Rune Haubo B Christensen

Diff between ordinal versions 2012.01-19 dated 2012-01-20 and 2012.09-10 dated 2012-09-10

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Package multcomp updated to version 1.2-13 with previous version 1.2-12 dated 2012-03-09

Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book "Multiple Comparisons Using R" (Bretz, Hothorn, Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre], Frank Bretz [aut], Peter Westfal [aut]
Maintainer: Torsten Hothorn

Diff between multcomp versions 1.2-12 dated 2012-03-09 and 1.2-13 dated 2012-09-10

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Package clhs updated to version 0.5-1 with previous version 0.5-0 dated 2012-06-07

Title: Conditioned Latin Hypercube Sampling
Description: This package implements the conditioned Latin hypercube sampling, as published by Minasny and McBratney (2006). This method proposes to stratify sampling in presence of ancillary data. An extension of this method, which propose to associate a cost to each individual and take it into account during the optimisation process, is also proposed (Roudier et al., 2012).
Author: Pierre Roudier
Maintainer: Pierre Roudier

Diff between clhs versions 0.5-0 dated 2012-06-07 and 0.5-1 dated 2012-09-10

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Package Runuran updated to version 0.20.0 with previous version 0.19.0 dated 2012-01-31

Title: R interface to the UNU.RAN random variate generators
Description: Interface to the UNU.RAN library for Universal Non-Uniform RANdom variate generators. Thus it allows to build non-uniform random number generators from quite arbitrary distributions. In particular, it provides an algorithm for fast numerical inversion for distribution with given density function. In addition, the package contains densities, distribution functions and quantiles from a couple of distributions.
Author: Josef Leydold and Wolfgang H\"ormann
Maintainer: Josef Leydold

Diff between Runuran versions 0.19.0 dated 2012-01-31 and 0.20.0 dated 2012-09-10

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Package phonR updated to version 0.3-0 with previous version 0.2.1 dated 2012-09-09

Title: R tools for phoneticians and phonologists
Description: phonR is an R package for phoneticians and phonologists, including functions for normalization and plotting of vowels.
Author: Daniel R. McCloy
Maintainer: Daniel R. McCloy

Diff between phonR versions 0.2.1 dated 2012-09-09 and 0.3-0 dated 2012-09-10

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Package paran updated to version 1.5.1 with previous version 1.4.3 dated 2010-06-05

Title: Horn's Test of Principal Components/Factors
Description: paran is an implementation of Horn's technique for numerically and graphically evaluating the components or factors retained in a principle components analysis (PCA) or common factor analysis (FA). Horn's method contrasts eigenvalues produced through a PCA or FA on a number of random data sets of uncorrelated variables with the same number of variables and observations as the experimental or observational data set to produce eigenvalues for components or factors that are adjusted for the sample error-induced inflation. Components with adjusted eigenvalues greater than one are retained. paran may also be used to conduct parallel analysis following Glorfeld's (1995) suggestions to reduce the likelihood of over-retention.
Author: Alexis Dinno
Maintainer: Alexis Dinno

Diff between paran versions 1.4.3 dated 2010-06-05 and 1.5.1 dated 2012-09-10

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Package OUwie updated to version 1.27 with previous version 1.24 dated 2012-06-13

Title: Analysis of evolutionary rates in an OU framework
Description: Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.
Author: Jeremy M. Beaulieu , Brian O'Meara
Maintainer: Jeremy M. Beaulieu

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 R/OUwie.contour.R    |   14 ++---
 R/OUwie.fixed.R      |   83 +++++++++++++++++-------------
 R/OUwie.sim.R        |   77 ++++++++++++++--------------
 R/varcov.ou.R        |   54 +++++++++----------
 R/weight.mat.R       |   77 ++++++++++++++--------------
 man/OUwie.Rd         |   11 ++--
 man/OUwie.contour.Rd |    6 +-
 man/OUwie.fixed.Rd   |    7 +-
 man/OUwie.sim.Rd     |    5 +
 12 files changed, 278 insertions(+), 227 deletions(-)

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Package KoNLP updated to version 0.76 with previous version 0.75 dated 2012-09-02

Title: Korean NLP Package
Description: Korean language processing package. Morphological analyzer, POS tagger, Keystroke converter, Hangul automata...
Author: Heewon Jeon
Maintainer: Heewon Jeon

Diff between KoNLP versions 0.75 dated 2012-09-02 and 0.76 dated 2012-09-10

 DESCRIPTION             |    8 +--
 MD5                     |   38 ++++++++-------
 NAMESPACE               |    2 
 NEWS                    |   12 ++++
 R/hangulUtils.R         |   82 ++++++++++++++++-----------------
 R/koAnalyzerRun.R       |   12 +++-
 R/manageDic.R           |  117 +++++++++++++++++++++++++++++++++++++++---------
 R/onLoad.R              |   50 +++++++++-----------
 inst/java/jhannanum.jar |binary
 inst/java/ko.jar        |binary
 man/backupUsrDic.Rd     |    5 +-
 man/is.ascii.Rd         |    4 -
 man/is.hangul.Rd        |    4 -
 man/is.jaeum.Rd         |    4 -
 man/is.jamo.Rd          |    4 -
 man/is.moeum.Rd         |    4 -
 man/mergeUserDic.Rd     |    5 +-
 man/reloadAllDic.Rd     |    9 ++-
 man/restoreUsrDic.Rd    |    5 +-
 man/useSejongDic.Rd     |only
 man/useSystemDic.Rd     |only
 21 files changed, 229 insertions(+), 136 deletions(-)

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Package JavaGD updated to version 0.5-5.1 with previous version 0.5-5 dated 2011-12-11

Title: Java Graphics Device
Description: Graphics device routing all graphics commands to a Java program. The actual functionality of the JavaGD depends on the Java-side implementation. Simple AWT and Swing implementations are included.
Author: Simon Urbanek
Maintainer: Simon Urbanek

Diff between JavaGD versions 0.5-5 dated 2011-12-11 and 0.5-5.1 dated 2012-09-10

 DESCRIPTION          |   14 ++++---
 MD5                  |    7 ++-
 NAMESPACE            |only
 R/windows/FirstLib.R |   98 +++++++++++++++++++++++++--------------------------
 R/zzz.R.in           |    2 -
 5 files changed, 62 insertions(+), 59 deletions(-)

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Package gRim updated to version 0.1-13 with previous version 0.1-12 dated 2012-08-08

Title: Graphical Interaction Models
Description: Implements graphical interaction models for contingency tables (i.e. log-linear models) and graphical Gaussian models for the multivariate normal data (i.e. covariance selection models) and mixed interaction models
Author: Søren Højsgaard
Maintainer: Søren Højsgaard

Diff between gRim versions 0.1-12 dated 2012-08-08 and 0.1-13 dated 2012-09-10

 gRim-0.1-12/gRim/R/pFormula.R          |only
 gRim-0.1-13/gRim/ChangeLog             |   10 +
 gRim-0.1-13/gRim/DESCRIPTION           |   12 +-
 gRim-0.1-13/gRim/MD5                   |   49 ++++----
 gRim-0.1-13/gRim/NAMESPACE             |    1 
 gRim-0.1-13/gRim/R/CGstats.R           |   72 -------------
 gRim-0.1-13/gRim/R/MI-dimension.R      |   85 +++++++++------
 gRim-0.1-13/gRim/R/MI-fit.R            |   33 ++----
 gRim-0.1-13/gRim/R/MI-utilities.R      |    6 -
 gRim-0.1-13/gRim/R/MI-weakdata.R       |   13 +-
 gRim-0.1-13/gRim/R/MI-weakmodel.R      |    8 -
 gRim-0.1-13/gRim/R/MI-xxx2yyy.R        |   26 ++--
 gRim-0.1-13/gRim/R/dmod-dimension.R    |    2 
 gRim-0.1-13/gRim/R/ggmfit.R            |    2 
 gRim-0.1-13/gRim/R/iModel-cmod.R       |    9 -
 gRim-0.1-13/gRim/R/iModel-dmod.R       |    8 -
 gRim-0.1-13/gRim/R/iModel-general.R    |    1 
 gRim-0.1-13/gRim/R/iModel-labelEdges.R |    6 -
 gRim-0.1-13/gRim/R/iModel-mmod.R       |   30 ++---
 gRim-0.1-13/gRim/R/iModel-plot.R       |    2 
 gRim-0.1-13/gRim/R/iModel-print.R      |  132 +++++++++++++++---------
 gRim-0.1-13/gRim/R/iModel-testdelete.R |   98 ++++++++---------
 gRim-0.1-13/gRim/R/pFormula2.R         |  181 +++++++++++++++------------------
 gRim-0.1-13/gRim/inst/doc/gRim.pdf     |binary
 gRim-0.1-13/gRim/src/Makevars          |    4 
 gRim-0.1-13/gRim/src/Makevars.win      |only
 gRim-0.1-13/gRim/src/spdinv-arma.cpp   |only
 27 files changed, 388 insertions(+), 402 deletions(-)

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Package emdbook updated to version 1.3.2.1 with previous version 1.3.2 dated 2012-01-28

Title: Ecological models and data (book support)
Description: Auxiliary functions and data sets for _Ecological Models and Data_, a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0)
Author: Ben Bolker
Maintainer: Ben Bolker

Diff between emdbook versions 1.3.2 dated 2012-01-28 and 1.3.2.1 dated 2012-09-10

 DESCRIPTION  |    8 ++++----
 MD5          |    6 +++---
 R/dists.R    |    2 +-
 inst/NEWS.Rd |    6 ++++++
 4 files changed, 14 insertions(+), 8 deletions(-)

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New package Deducer with initial version 0.7-4
Package: Deducer
Version: 0.7-4
Date: 2012-03-01
Title: Deducer
Author: Ian Fellows with contributions from others (see documentation).
Maintainer: Ian Fellows
Description: An intuitive, cross-platform graphical data analysis system. It uses menus and dialogs to guide the user efficiently through the data manipulation and analysis process, and has an excel like spreadsheet for easy data frame visualization and editing. Deducer works best when used with the Java based R GUI JGR, but the dialogs can be called from the command line. Dialogs have also been integrated into the Windows Rgui.
Depends: R (>= 2.15.0), rJava (>= 0.8-4), ggplot2 (>= 0.9.2), scales (>= 0.2.2), JGR(>= 1.7-10), car, multcomp, effects, foreign, plyr, e1071
Suggests: lawstat, Hmisc
SystemRequirements: Java (>= 1.4), JRI
License: GPL-2
URL: http://www.deducer.org/manual.html http://www.fellstat.com
X-CRAN-Comment: This package has been removed: it contained copies of copyright code used contrary to its license and with no acknowledegement of copyright.
Repository: CRAN
Date/Publication: 2012-09-10 06:41:45

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