Title: R object-oriented programming with or without references
Diff between R.oo versions 1.9.8 dated 2012-06-28 and 1.9.9 dated 2012-09-12
Description: Methods and classes for object-oriented programming in R
with or without references. Large effort has been made on
making definition of methods as simple as possible with a
minimum of maintenance for package developers. The package has
been developed since 2001 and is now considered very stable.
This is a cross-platform package implemented in pure R that
defines standard S3 classes without any tricks.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 14 ++++------
MD5 | 14 +++++-----
R/Exception.R | 39 ++++++++++++++++------------
R/Package.R | 13 ++++++++-
R/abort.R | 78 ++++++++++++++++++++++++++++++++++++++++-----------------
incl/abort.Rex | 11 ++++++--
inst/NEWS | 16 ++++++++++-
man/abort.Rd | 29 ++++++++++++++++-----
8 files changed, 150 insertions(+), 64 deletions(-)
Title: Infinitesimally robust estimators for preprocessing omics data
Diff between RobLoxBioC versions 0.8.2 dated 2012-01-17 and 0.8.3 dated 2012-09-12
Description: Functions for the determination of optimally robust
influence curves and estimators for preprocessing omics data,
in particular gene expression data.
Author: Matthias Kohl
Maintainer: Matthias Kohl
RobLoxBioC-0.8.2/RobLoxBioC/R/robloxbiocBeadLevelList.R |only
RobLoxBioC-0.8.2/RobLoxBioC/R/sysdata.rda |only
RobLoxBioC-0.8.3/RobLoxBioC/DESCRIPTION | 16
RobLoxBioC-0.8.3/RobLoxBioC/MD5 | 20
RobLoxBioC-0.8.3/RobLoxBioC/R/00pre2160.R |only
RobLoxBioC-0.8.3/RobLoxBioC/R/robloxbiocBeadLevelData.R |only
RobLoxBioC-0.8.3/RobLoxBioC/R/robloxbiocMatrix.R | 56 -
RobLoxBioC-0.8.3/RobLoxBioC/RobLoxBioC-Ex.R | 8
RobLoxBioC-0.8.3/RobLoxBioC/inst/CITATION | 24
RobLoxBioC-0.8.3/RobLoxBioC/inst/NEWS | 11
RobLoxBioC-0.8.3/RobLoxBioC/man/0RobLoxBioC-package.Rd | 17
RobLoxBioC-0.8.3/RobLoxBioC/man/robloxbioc.Rd | 366 +++++-----
RobLoxBioC-0.8.3/RobLoxBioC/tests/Examples/RobLoxBioC-Ex.Rout.save | 36
13 files changed, 257 insertions(+), 297 deletions(-)
Title: Optimally robust influence curves and estimators for location
and scale
Diff between RobLox versions 0.8 dated 2011-01-20 and 0.8.2 dated 2012-09-12
Description: Functions for the determination of optimally robust
influence curves and estimators in case of normal location
and/or scale
Author: Matthias Kohl
Maintainer: Matthias Kohl
DESCRIPTION | 19 +-
MD5 |only
R/ZZZinternal.R |only
R/sysdata.rda |binary
RobLox-Ex.R |only
inst/NEWS | 10 -
inst/scripts |only
man/0RobLox-package.Rd | 18 +-
man/roblox.Rd | 4
man/rowRoblox.Rd | 4
man/showdown.Rd | 4
tests/Examples/RobLox-Ex.Rout.save | 274 ++++++++++++++++++-------------------
12 files changed, 175 insertions(+), 158 deletions(-)
Title: Miscellaneous Functions from M. Kohl
Diff between MKmisc versions 0.91 dated 2012-04-13 and 0.92 dated 2012-09-12
Description: Miscellaneous Functions from M. Kohl
Author: Matthias Kohl
Maintainer: Matthias Kohl
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 10 +++++++++-
R/AUC.R | 9 ++++++---
man/0MKmisc-package.Rd | 4 ++--
man/AUC.Rd | 12 ++++++++----
6 files changed, 34 insertions(+), 19 deletions(-)
Title: Various R programming tools for data manipulation
Diff between gdata versions 2.11.0 dated 2012-06-20 and 2.12.0 dated 2012-09-12
Description: Various R programming tools for data manipulation
Author: Gregory R. Warnes, with contributions from Ben Bolker, Gregor
Gorjanc, Gabor Grothendieck, Ales Korosec, Thomas Lumley, Don
MacQueen, Arni Magnusson, Jim Rogers, and others
Maintainer: Gregory Warnes
.Rinstignore | 2
ChangeLog | 70 ++
DESCRIPTION | 8
MD5 | 36 -
NEWS | 31 +
R/aggregate.table.R | 44 +
R/read.xls.R | 27 -
inst/ChangeLog | 70 ++
inst/NEWS | 31 +
inst/doc/mapLevels.pdf |binary
inst/doc/unknown.pdf |binary
inst/perl/xls2csv.pl | 2
inst/perl/xls2tab.pl | 2
inst/perl/xls2tsv.pl | 2
inst/xls/latin-1.xls |only
inst/xls/latin-1.xlsx |only
man/aggregate.table.Rd | 19
man/interleave.Rd | 12
man/read.xls.Rd | 45 +
tests/test.read.xls.R | 9
tests/test.read.xls.Rout.save | 1037 +++++++++++++++++++++---------------------
21 files changed, 855 insertions(+), 592 deletions(-)
Title: GWAS Post-Processing Utilities
Diff between postgwas versions 1.0 dated 2012-09-11 and 1.01 dated 2012-09-12
Description: Facilitates annotation of genes to SNPs using proximity or
LD information, creates regional and manhattan plots and
contains an interaction network analysis tool for GWAS result
data. Special features cover subphenotype (intermediate
phenotype) comparison and rare variant display.
Author: Milan Hiersche
Maintainer: Milan Hiersche
DESCRIPTION | 17 +++---
MD5 | 24 ++++----
NAMESPACE | 7 --
R/getInteractions.R | 12 +++-
R/gwas2network.R | 22 +++----
R/gwas2network.plot.R | 22 +------
R/manhattanplot.R | 139 ++++++++++++++++++++++++++------------------------
R/postgwas.R | 9 +--
R/regionalplot.R | 15 +++--
man/LDparallel.Rd | 6 --
man/gwas2network.Rd | 29 +++++-----
man/manhattanplot.Rd | 2
man/regionalplot.Rd | 97 +++++++++++++++++-----------------
13 files changed, 202 insertions(+), 199 deletions(-)
Title: Social Relation Model (SRM) analyses for single or multiple
round-robin groups
Diff between TripleR versions 1.1.6 dated 2012-02-06 and 1.1.7 dated 2012-09-12
Description: Social Relation Model (SRM) analyses for single or
multiple round-robin groups are performed. These analyses are
either based on one manifest variable, one latent construct
measured by two manifest variables, two manifest variables and
their bivariate relations, or two latent constructs each
measured by two manifest variables. Within-group t-tests for
variance components and covariances are provided for single
groups, between-groups t-tests for multiple groups. Handling
for missing values is provided.
Author: S. C. Schmukle, F. D. Schönbrodt and M. D. Back
Maintainer: Felix Schönbrodt
DESCRIPTION | 12 ++++++------
MD5 | 12 ++++++------
NEWS | 7 +++++++
R/RR.r | 28 +++++++++++++++++-----------
TripleR-Ex.R | 2 --
man/RR.Rd | 2 --
man/TripleR-package.Rd | 6 +++---
7 files changed, 39 insertions(+), 30 deletions(-)
Title: Basic Robust Statistics
Diff between robustbase versions 0.9-3 dated 2012-07-26 and 0.9-4 dated 2012-09-12
Description: "Essential" Robust Statistics. The goal is to provide
tools allowing to analyze data with robust methods. This
includes regression methodology including model selections and
multivariate statistics where we strive to cover the book
"Robust Statistics, Theory and Methods" by Maronna, Martin and
Yohai; Wiley 2006.
Author: Original code by many authors, notably Peter Rousseeuw and
Christophe Croux, see file 'Copyrights'; Valentin Todorov
Maintainer: Martin Maechler
DESCRIPTION | 8
MD5 | 33 +++
inst/doc/graphics.functions.R | 21 ++
inst/doc/lmrob_simulation.Rnw | 259 ++++++++++++++++++------------
inst/doc/lmrob_simulation.pdf |binary
inst/doc/plot-fig-AdB2-1.pdf |only
inst/doc/plot-fig-Mscale-all.pdf |only
inst/doc/plot-fig-Mscale.pdf |only
inst/doc/plot-fig-cpr.pdf |only
inst/doc/plot-fig-efficiency-all.pdf |only
inst/doc/plot-fig-efficiency.pdf |only
inst/doc/plot-fig-emp-level.pdf |only
inst/doc/plot-fig-example-design.pdf |only
inst/doc/plot-fig-lqq-level.pdf |only
inst/doc/plot-fig-max-asymptotic-bias.pdf |only
inst/doc/plot-fig-meanscale.pdf |only
inst/doc/plot-fig-power-1-0_2.pdf |only
inst/doc/plot-fig-power-1-0_4.pdf |only
inst/doc/plot-fig-power-1-0_6.pdf |only
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inst/doc/plot-fig-power-1-1.pdf |only
inst/doc/plot-fig-pred-points.pdf |only
inst/doc/plot-fig-psi-functions.pdf |only
inst/doc/plot-fig-qscale-all.pdf |only
inst/doc/plot-fig-qscale.pdf |only
inst/doc/plot-fig-sdAdB2-1.pdf |only
inst/doc/plot-fig-sdscale-1.pdf |only
inst/doc/plot-fig-sdscale-all.pdf |only
man/lmrob.Rd | 6
29 files changed, 219 insertions(+), 108 deletions(-)
Title: R/GNU Linear Programming Kit Interface
Diff between Rglpk versions 0.3-9 dated 2012-09-05 and 0.3-10 dated 2012-09-12
Description: R interface to the GNU Linear Programming Kit (GLPK
version 4.47 is shipped with the source package). GLPK is open
source software for solving large-scale linear programming
(LP), mixed integer linear programming (MILP) and other related
problems.
Author: Kurt Hornik [aut], Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl
Rglpk-0.3-10/Rglpk/DESCRIPTION | 11 +--
Rglpk-0.3-10/Rglpk/MD5 | 76 ++++---------------------
Rglpk-0.3-10/Rglpk/R/Misc.R | 20 +++---
Rglpk-0.3-10/Rglpk/R/Rglpk_solve.R | 20 ++++--
Rglpk-0.3-10/Rglpk/R/control.R |only
Rglpk-0.3-10/Rglpk/R/filereader.R | 77 +++++++++++++++-----------
Rglpk-0.3-10/Rglpk/inst/CHANGELOG | 34 +++++++++++
Rglpk-0.3-10/Rglpk/inst/examples |only
Rglpk-0.3-10/Rglpk/man/Rglpk_read_file.Rd | 48 ++++++++++++----
Rglpk-0.3-10/Rglpk/man/Rglpk_solve.Rd | 63 ++++++++++++---------
Rglpk-0.3-10/Rglpk/src/Rglpk_read_file.c | 88 ++++++++++++++++++++++--------
Rglpk-0.3-9/Rglpk/inst/mod |only
Rglpk-0.3-9/Rglpk/inst/mps |only
13 files changed, 256 insertions(+), 181 deletions(-)
Title: Improved Foreign Function Interface (FFI) and Dynamic Bindings
to C Libraries (e.g. OpenGL)
Diff between rdyncall versions 0.7.4 dated 2011-12-13 and 0.7.5 dated 2012-09-12
Description: The package provides a cross-platform framework for
dynamic binding of C libraries using a flexible Foreign
Function Interface (FFI). The FFI supports almost all
fundamental C types, multiple calling conventions, symbolic
access to foreign C struct/union data types and wrapping of R
functions as C callback function pointers. Dynamic bindings to
shared C libraries are data-driven by cross-platform binding
specification using a compact plain text format ; an initial
repository of bindings to a couple of common C libraries
(OpenGL, SDL, Expat, glew, CUDA, OpenCL, ODE, R) comes with the
package. The package includes a variety of technology demos
and OS-specific notes for installation of shared libraries.
Author: Daniel Adler
Maintainer: Daniel Adler
rdyncall-0.7.4/rdyncall/src/dyncall/README.iPhoneOS |only
rdyncall-0.7.4/rdyncall/src/dyncall/doc/colortab.sty |only
rdyncall-0.7.4/rdyncall/src/dyncall/doc/colortab.tex |only
rdyncall-0.7.4/rdyncall/src/dyncall/doc/dyncall.3 |only
rdyncall-0.7.5/rdyncall/BUGS | 3
rdyncall-0.7.5/rdyncall/ChangeLog | 16
rdyncall-0.7.5/rdyncall/DESCRIPTION | 24 -
rdyncall-0.7.5/rdyncall/MD5 | 240 +++++-----
rdyncall-0.7.5/rdyncall/R/callback.R | 11
rdyncall-0.7.5/rdyncall/R/dynfind.R | 3
rdyncall-0.7.5/rdyncall/R/dynport.R | 57 --
rdyncall-0.7.5/rdyncall/TODO | 12
rdyncall-0.7.5/rdyncall/demo/00Index | 3
rdyncall-0.7.5/rdyncall/demo/factorial.R |only
rdyncall-0.7.5/rdyncall/demo/gles.R |only
rdyncall-0.7.5/rdyncall/demo/glpk.R |only
rdyncall-0.7.5/rdyncall/inst/doc/FLI.Rnw | 7
rdyncall-0.7.5/rdyncall/inst/doc/FLI.pdf |binary
rdyncall-0.7.5/rdyncall/inst/dynports/EGL.R |only
rdyncall-0.7.5/rdyncall/inst/dynports/GLUT.R |only
rdyncall-0.7.5/rdyncall/inst/dynports/csound.R |only
rdyncall-0.7.5/rdyncall/inst/dynports/glfw.R |only
rdyncall-0.7.5/rdyncall/inst/dynports/glpk.R |only
rdyncall-0.7.5/rdyncall/man/dynbind.Rd | 2
rdyncall-0.7.5/rdyncall/man/dyncall.Rd | 42 +
rdyncall-0.7.5/rdyncall/man/dyncallback.Rd | 5
rdyncall-0.7.5/rdyncall/man/dynfind.Rd | 6
rdyncall-0.7.5/rdyncall/man/dynport.Rd | 66 +-
rdyncall-0.7.5/rdyncall/man/rdyncall-demos.Rd | 13
rdyncall-0.7.5/rdyncall/man/rdyncall.Rd | 41 +
rdyncall-0.7.5/rdyncall/man/struct.Rd | 4
rdyncall-0.7.5/rdyncall/src/dyncall/ChangeLog | 20
rdyncall-0.7.5/rdyncall/src/dyncall/LICENSE | 2
rdyncall-0.7.5/rdyncall/src/dyncall/License.txt | 2
rdyncall-0.7.5/rdyncall/src/dyncall/Makefile.embedded | 28 -
rdyncall-0.7.5/rdyncall/src/dyncall/README.Minix | 2
rdyncall-0.7.5/rdyncall/src/dyncall/README.Solaris | 4
rdyncall-0.7.5/rdyncall/src/dyncall/README.Windows | 6
rdyncall-0.7.5/rdyncall/src/dyncall/README.embedded | 20
rdyncall-0.7.5/rdyncall/src/dyncall/README.iOS |only
rdyncall-0.7.5/rdyncall/src/dyncall/SVNVERSION | 2
rdyncall-0.7.5/rdyncall/src/dyncall/ToDo | 24 -
rdyncall-0.7.5/rdyncall/src/dyncall/autovar/autovar_OS.h | 2
rdyncall-0.7.5/rdyncall/src/dyncall/buildsys/gmake/epilog.gmake | 4
rdyncall-0.7.5/rdyncall/src/dyncall/buildsys/gmake/install.gmake | 28 -
rdyncall-0.7.5/rdyncall/src/dyncall/buildsys/gmake/os/android.gmake |only
rdyncall-0.7.5/rdyncall/src/dyncall/buildsys/gmake/tool/androidndk.gmake |only
rdyncall-0.7.5/rdyncall/src/dyncall/buildsys/gmake/tool/man.gmake |only
rdyncall-0.7.5/rdyncall/src/dyncall/buildsys/vs2005/dyncall/dyncall.vcproj | 7
rdyncall-0.7.5/rdyncall/src/dyncall/configure | 51 +-
rdyncall-0.7.5/rdyncall/src/dyncall/configure.bat | 30 -
rdyncall-0.7.5/rdyncall/src/dyncall/configure2 | 4
rdyncall-0.7.5/rdyncall/src/dyncall/doc/callconvs/callconv_arm32.tex | 10
rdyncall-0.7.5/rdyncall/src/dyncall/doc/callconvs/callconv_mips.tex | 2
rdyncall-0.7.5/rdyncall/src/dyncall/doc/callconvs/callconv_ppc32.tex | 3
rdyncall-0.7.5/rdyncall/src/dyncall/doc/callconvs/callconv_sparc.tex |only
rdyncall-0.7.5/rdyncall/src/dyncall/doc/callconvs/callconv_sparc64.tex |only
rdyncall-0.7.5/rdyncall/src/dyncall/doc/manual.tex | 79 +--
rdyncall-0.7.5/rdyncall/src/dyncall/doc/manual_build.tex | 116 ++--
rdyncall-0.7.5/rdyncall/src/dyncall/doc/manual_cc.tex | 4
rdyncall-0.7.5/rdyncall/src/dyncall/doc/manual_dyncall_api.tex | 7
rdyncall-0.7.5/rdyncall/src/dyncall/doc/manual_overview.tex | 48 --
rdyncall-0.7.5/rdyncall/src/dyncall/doc/manual_title.tex | 1
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/GNUmakefile | 1
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/Makefile.embedded | 10
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/Makefile.psp | 12
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rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall.h | 1
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_call.S | 12
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rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_call_arm32_thumb_gas.s | 2
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_call_sparc.S | 22
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_call_sparc64.S | 26 -
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_callvm.c | 12
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_callvm_arm32_arm.c | 5
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_callvm_arm32_arm_armhf.c |only
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_callvm_arm32_arm_armhf.h |only
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_callvm_x86.c | 1
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_macros.h | 22
rdyncall-0.7.5/rdyncall/src/dyncall/dyncall/dyncall_struct.c | 6
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/GNUmakefile | 4
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/Makefile.embedded | 12
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/dyncall_args.h | 2
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/dyncall_callback.h | 6
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/dyncall_callback_arm32_arm.c | 4
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/dyncall_callback_ppc32.c | 4
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/dyncall_callback_sparc32.c | 4
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/dyncall_callback_sparc64.c | 4
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/dyncall_callback_x64.c | 4
rdyncall-0.7.5/rdyncall/src/dyncall/dyncallback/dyncall_callback_x86.c | 4
rdyncall-0.7.5/rdyncall/src/dyncall/dynload/Makefile.embedded | 8
rdyncall-0.7.5/rdyncall/src/dyncall/dynload/dynload_syms_elf.c | 58 +-
rdyncall-0.7.5/rdyncall/src/dyncall/dynload/dynload_unix.c | 2
rdyncall-0.7.5/rdyncall/src/dyncall/test/GNUmakefile | 2
rdyncall-0.7.5/rdyncall/src/dyncall/test/Makefile.embedded | 98 ++--
rdyncall-0.7.5/rdyncall/src/dyncall/test/Makefile.psp | 2
rdyncall-0.7.5/rdyncall/src/dyncall/test/call_suite/main.c | 3
rdyncall-0.7.5/rdyncall/src/dyncall/test/callback_plain/callback_plain.c | 2
rdyncall-0.7.5/rdyncall/src/dyncall/test/callf/main.c | 3
rdyncall-0.7.5/rdyncall/src/dyncall/test/common/platformInit.h | 45 -
rdyncall-0.7.5/rdyncall/src/dyncall/test/ellipsis/GNUmakefile | 2
rdyncall-0.7.5/rdyncall/src/dyncall/test/ellipsis/Makefile.psp |only
rdyncall-0.7.5/rdyncall/src/dyncall/test/ellipsis/main.cc | 2
rdyncall-0.7.5/rdyncall/src/dyncall/test/malloc_wx/test_wx.c | 2
rdyncall-0.7.5/rdyncall/src/dyncall/test/nm/GNUmakefile | 3
rdyncall-0.7.5/rdyncall/src/dyncall/test/nm/Makefile.embedded | 4
rdyncall-0.7.5/rdyncall/src/dyncall/test/plain/Makefile.psp |only
rdyncall-0.7.5/rdyncall/src/dyncall/test/plain/test_main.c | 6
rdyncall-0.7.5/rdyncall/src/dyncall/test/plain/test_structs.c | 6
rdyncall-0.7.5/rdyncall/src/dyncall/test/plain_c++/Makefile.psp |only
rdyncall-0.7.5/rdyncall/src/dyncall/test/plain_c++/test_main.cc | 7
rdyncall-0.7.5/rdyncall/src/dyncall/test/resolve_self/GNUmakefile | 7
rdyncall-0.7.5/rdyncall/src/dyncall/test/resolve_self/Makefile.embedded | 4
rdyncall-0.7.5/rdyncall/src/dyncall/test/sign/sign.c | 1
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite/GNUmakefile | 3
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite/Makefile.psp | 8
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite/main.c | 9
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite2/Makefile.psp |only
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite2/main.cc | 3
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite2_x86win32fast/main.cc | 17
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite2_x86win32std/main.cc | 17
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite3/GNUmakefile | 3
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite3/Makefile.psp | 8
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite3/main.cc | 7
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite_floats/GNUmakefile | 3
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite_floats/Makefile.psp | 8
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite_floats/main.cc | 7
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite_x86win32fast/main.cc | 4
rdyncall-0.7.5/rdyncall/src/dyncall/test/suite_x86win32std/main.cc | 3
rdyncall-0.7.5/rdyncall/src/dyncall/test/thunk/test_thunk.c | 2
rdyncall-0.7.5/rdyncall/src/rcallback.c | 76 +--
rdyncall-0.7.5/rdyncall/src/rdyncall.c | 56 +-
rdyncall-0.7.5/rdyncall/src/rpackage.c | 2
135 files changed, 1054 insertions(+), 690 deletions(-)
Title: Visualization of spatial and spatio-temporal objects in Google
Earth
Diff between plotKML versions 0.2-4 dated 2012-08-21 and 0.2-5 dated 2012-09-12
Description: Writes sp-class, spacetime-class, raster-class and similar
spatial and spatio-temporal objects to KML following some basic
cartographic rules. Suitable for visualization of complete
analysis outputs.
Author: Tomislav Hengl
Maintainer: Tomislav Hengl
plotKML-0.2-4/plotKML/NEWS |only
plotKML-0.2-4/plotKML/inst/atom-author-link.xsd |only
plotKML-0.2-5/plotKML/DESCRIPTION | 11 +
plotKML-0.2-5/plotKML/MD5 | 84 +++++-------
plotKML-0.2-5/plotKML/R/AAAA.R | 27 ++-
plotKML-0.2-5/plotKML/R/aesthetics.R | 18 ++
plotKML-0.2-5/plotKML/R/layer.Raster.R | 19 ++
plotKML-0.2-5/plotKML/R/layer.RasterBrick.R | 8 -
plotKML-0.2-5/plotKML/R/layer.SpatialLines.R | 2
plotKML-0.2-5/plotKML/R/layer.SpatialPixels.R | 21 ++-
plotKML-0.2-5/plotKML/R/legend.bar.R | 7 -
plotKML-0.2-5/plotKML/R/plotKML.RasterBrickTimeSeries.R | 4
plotKML-0.2-5/plotKML/R/plotKML.SpatialSamplingPattern.R | 4
plotKML-0.2-5/plotKML/R/plotKML.SpatialVectorsSimulations.R | 20 +-
plotKML-0.2-5/plotKML/R/spMetadata.R | 2
plotKML-0.2-5/plotKML/data/HRprec08.rda |binary
plotKML-0.2-5/plotKML/data/HRtemp08.rda |binary
plotKML-0.2-5/plotKML/data/LST.rda |binary
plotKML-0.2-5/plotKML/data/R_pal.rda |binary
plotKML-0.2-5/plotKML/data/SAGA_pal.rda |binary
plotKML-0.2-5/plotKML/data/USAWgrids.rda |binary
plotKML-0.2-5/plotKML/data/bargrid.rda |binary
plotKML-0.2-5/plotKML/data/barstr.rda |binary
plotKML-0.2-5/plotKML/data/barxyz.rda |binary
plotKML-0.2-5/plotKML/data/bigfoot.rda |binary
plotKML-0.2-5/plotKML/data/datalist | 34 ++--
plotKML-0.2-5/plotKML/data/eberg.rda |binary
plotKML-0.2-5/plotKML/data/eberg_contours.rda |binary
plotKML-0.2-5/plotKML/data/eberg_grid.rda |binary
plotKML-0.2-5/plotKML/data/eberg_grid25.rda |binary
plotKML-0.2-5/plotKML/data/eberg_zones.rda |binary
plotKML-0.2-5/plotKML/data/gpxbtour.rda |binary
plotKML-0.2-5/plotKML/data/worldgrids_pal.rda |binary
plotKML-0.2-5/plotKML/man/RasterBrickTimeSeries-class.Rd | 3
plotKML-0.2-5/plotKML/man/SpatialSamplingPattern-class.Rd | 3
plotKML-0.2-5/plotKML/man/getCRS-method.Rd | 4
plotKML-0.2-5/plotKML/man/kml-method.Rd | 11 +
plotKML-0.2-5/plotKML/man/kml_layer-method.Rd | 6
plotKML-0.2-5/plotKML/man/kml_legend.bar.Rd | 8 -
plotKML-0.2-5/plotKML/man/metadata2SLD-method.Rd | 2
plotKML-0.2-5/plotKML/man/plotKML-method.Rd | 62 ++++++++
plotKML-0.2-5/plotKML/man/reproject-method.Rd | 21 ++-
plotKML-0.2-5/plotKML/man/spMetadata-method.Rd | 30 +++-
plotKML-0.2-5/plotKML/man/vect2rast-method.Rd | 20 ++
44 files changed, 296 insertions(+), 135 deletions(-)
Title: Compositional Data Analysis
Diff between compositions versions 1.10-2 dated 2011-10-20 and 1.20-1 dated 2012-09-12
Description: The package provides functions for the consistent analysis
of compositional data (e.g. portions of substances) and
positive numbers (e.g. concentrations) in the way proposed by
Aitchison and Pawlowsky-Glahn.
Author: K. Gerald van den Boogaart
Maintainer: K. Gerald van den Boogaart
compositions-1.10-2/compositions/inst/doc/UsingCompositions.aux |only
compositions-1.10-2/compositions/inst/doc/UsingCompositions.dvi |only
compositions-1.10-2/compositions/inst/doc/UsingCompositions.log |only
compositions-1.10-2/compositions/inst/doc/UsingCompositions.tex |only
compositions-1.10-2/compositions/inst/doc/UsingCompositions.tex.flc |only
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compositions-1.10-2/compositions/tests/TAGS |only
compositions-1.10-2/compositions/tests/myfirst.kin |only
compositions-1.10-2/compositions/tests/tests.R |only
compositions-1.20-1/compositions/DESCRIPTION | 8 +-
compositions-1.20-1/compositions/INDEX |only
compositions-1.20-1/compositions/MD5 | 27 +++-------
compositions-1.20-1/compositions/R/FunctionOutliers.R | 18 ++++++
compositions-1.20-1/compositions/R/Geostat.R | 10 +--
compositions-1.20-1/compositions/R/codadendrogram.R | 2
compositions-1.20-1/compositions/R/compositions.R | 19 +++----
compositions-1.20-1/compositions/R/ctests.R | 2
compositions-1.20-1/compositions/inst/doc/UsingCompositions.pdf |binary
compositions-1.20-1/compositions/man/outlierplot.Rd | 12 ++++
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20 files changed, 59 insertions(+), 39 deletions(-)
Title: Misc Functions of the Department of Statistics (e1071), TU Wien
Diff between e1071 versions 1.6 dated 2011-09-12 and 1.6-1 dated 2012-09-12
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines, shortest
path computation, bagged clustering, naive Bayes classifier,
...
Author: David Meyer [aut, cre], Evgenia Dimitriadou [aut], Kurt Hornik
[aut], Andreas Weingessel [aut], Friedrich Leisch [aut]
Maintainer: David Meyer
DESCRIPTION | 21 ++++++++++++++-------
MD5 | 18 +++++++++---------
R/bclust.R | 2 +-
R/naiveBayes.R | 41 +++++++++++++++++++++--------------------
R/sparse.R | 6 ++++--
R/svm.R | 17 +++++++++++++++++
inst/NEWS.Rd | 15 +++++++++++++++
inst/doc/svmdoc.pdf |binary
man/naiveBayes.Rd | 12 ++++++------
man/read.matrix.csr.Rd | 8 ++++----
10 files changed, 91 insertions(+), 49 deletions(-)
Title: OpenStreetMap and R
Diff between osmar versions 1.1-4 dated 2012-05-25 and 1.1-5 dated 2012-09-12
Description: This package provides infrastructure to access
OpenStreetMap data from different sources, to work with the
data in common R manner, and to convert data into available
infrastructure provided by existing R packages (e.g., into sp
and igraph0 objects).
Author: Thomas Schlesinger and Manuel J. A. Eugster
Maintainer: Thomas Schlesinger
DESCRIPTION | 12 +++-----
MD5 | 28 ++++++++++---------
NAMESPACE | 1
NEWS | 28 +++++++++++++++++--
R/as-sp.R | 12 +++++---
R/osmar-finding.R | 17 ++++++++---
R/osmar-plotting.R | 14 ++++++++-
R/osmar-subsetting.R | 21 +++++++++-----
R/osmar.R | 74 +++++++++++++++++++++++++++++++++++++--------------
R/source-api.R | 15 ++++++++--
R/source-osmosis.R | 9 ++----
data/muc.RData |binary
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man/dim.osmar.Rd |only
man/osmsource_api.Rd | 16 +++++++++--
man/summary.osmar.Rd | 14 ++++++---
16 files changed, 187 insertions(+), 74 deletions(-)
More information about geneSignatureFinder at CRAN
Permanent link
Title: Genetic diversity partition statistics and Informative locus
selection.
Diff between diveRsity versions 1.0 dated 2012-08-14 and 1.2.2 dated 2012-09-12
Description: diveRsity is a package which allows the calculation of
both genetic diversity partition statistics, genetic
differentiation statistics and locus informativeness for
ancestry assignment. It also provides users with various option
to calculate bootstrapped 95% confidence intervals both across
loci, for pairwise population comparisons and to plot these
results interactively. V1.2 and up provides parallel computing
capabilities and pairwise results without bootstrapping.
Author: Kevin Keenan,
Maintainer: Kevin Keenan
diveRsity-1.0/diveRsity/R/diveRsity_v1.0.R |only
diveRsity-1.0/diveRsity/man/readGenepop.Rd |only
diveRsity-1.2.2/diveRsity/DESCRIPTION | 26 +++++++++++-----------
diveRsity-1.2.2/diveRsity/MD5 | 14 ++++++-----
diveRsity-1.2.2/diveRsity/NAMESPACE | 2 -
diveRsity-1.2.2/diveRsity/R/diveRsity_v1.2.2.R |only
diveRsity-1.2.2/diveRsity/doc |only
diveRsity-1.2.2/diveRsity/man/div.part.Rd | 17 ++++++++++++--
diveRsity-1.2.2/diveRsity/man/in.calc.Rd | 10 +++++---
diveRsity-1.2.2/diveRsity/man/readGenepop.user.Rd |only
10 files changed, 44 insertions(+), 25 deletions(-)
Title: Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd
ed)"
Diff between Sleuth2 versions 1.0-4 dated 2011-11-03 and 1.0-7 dated 2012-09-12
Description: Data sets from Ramsey, F.L. and Schafer, D.W. (2002), "The
Statistical Sleuth: A Course in Methods of Data Analysis (2nd
ed)", Duxbury.
Author: Original by F.L. Ramsey and D.W. Schafer, modifications by
Daniel W. Schafer, Jeannie Sifneos and Berwin A. Turlach
Maintainer: Berwin A Turlach
DESCRIPTION | 19 +-
MD5 | 286 ++++++++++++++++++++++----------------------
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data/case0102.rda |binary
data/case0201.rda |binary
data/case0202.rda |binary
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inst/doc/Sleuth2-manual.pdf |binary
man/case1902.Rd | 7 -
144 files changed, 157 insertions(+), 155 deletions(-)
Title: Regression Models for Ordinal Data
Diff between ordinal versions 2012.09-10 dated 2012-09-10 and 2012.09-11 dated 2012-09-12
Description: This package implements cumulative link (mixed) models
also known as ordered regression models, proportional odds
models, proportional hazards models for grouped survival times
and ordered logit/probit/... models. Estimation is via maximum
likelihood and mixed models are fitted with the Laplace
approximation and adaptive Gauss-Hermite quadrature. Multiple
random effect terms are allowed and they may be nested, crossed
or partially nested/crossed. Restrictions of symmetry and
equidistance can be imposed on the thresholds (cut-points).
Standard model methods are available (summary, anova,
drop-methods, step, confint, predict etc.) in addition to
profile methods and slice methods for visualizing the
likelihood function and checking convergence.
Author: Rune Haubo B Christensen
Maintainer: Rune Haubo B Christensen
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 3 +++
R/clmm.R | 3 ++-
inst/doc/clm_intro.pdf |binary
inst/doc/clm_tutorial.pdf |binary
inst/doc/clmm2_tutorial.pdf |binary
7 files changed, 15 insertions(+), 11 deletions(-)
Title: Munsell colour system
Diff between munsell versions 0.3 dated 2011-09-02 and 0.4 dated 2012-09-12
Description: Functions for exploring and using the Munsell colour
system
Author: Charlotte Wickham
Maintainer: Charlotte Wickham
munsell-0.3/munsell/man/plot_common.Rd |only
munsell-0.3/munsell/man/plot_polar.Rd |only
munsell-0.4/munsell/DESCRIPTION | 6 -
munsell-0.4/munsell/MD5 | 23 +++----
munsell-0.4/munsell/NAMESPACE | 4 -
munsell-0.4/munsell/NEWS | 6 +
munsell-0.4/munsell/R/plot.r | 98 +++++++++++++------------------
munsell-0.4/munsell/man/chroma_slice.Rd | 8 +-
munsell-0.4/munsell/man/mnsl.Rd | 2
munsell-0.4/munsell/man/mnsl_hues.Rd | 3
munsell-0.4/munsell/man/munsell.Rd | 3
munsell-0.4/munsell/man/munsell.map.Rd |only
munsell-0.4/munsell/man/plot_mnsl.Rd | 2
munsell-0.4/munsell/man/theme_munsell.Rd |only
munsell-0.4/munsell/munsell.Rproj |only
15 files changed, 78 insertions(+), 77 deletions(-)
Title: Visualization of a correlation matrix
Diff between corrplot versions 0.60 dated 2011-12-05 and 0.66 dated 2012-09-12
Description: The corrplot package is a graphical display of a
correlation matrix, confidence interval. It also contains some
algorithms to do matrix reordering.
Author: Taiyun Wei
Maintainer: Taiyun Wei
DESCRIPTION | 14 ++-
MD5 | 19 +++--
NEWS | 9 ++
R/corrplot.R | 171 +++++++++++++++++++++++++++++++-----------------
R/corrplot.mixed.R | 10 +-
inst |only
man/corrMatOrder.Rd | 1
man/corrplot-package.Rd | 4 -
man/corrplot.Rd | 134 ++++++++++++++++++-------------------
man/corrplot.mixed.Rd | 16 ++--
10 files changed, 221 insertions(+), 157 deletions(-)
Title: Calibration functions for analytical chemistry
Diff between chemCal versions 0.1-27 dated 2011-09-12 and 0.1-28 dated 2012-09-12
Description: chemCal provides simple functions for plotting linear
calibration functions and estimating standard errors for
measurements according to the Handbook of Chemometrics and
Qualimetrics: Part A by Massart et al. There are also functions
estimating the limit of detection (LOQ) and limit of
quantification (LOD). The functions work on model objects from
- optionally weighted - linear regression (lm) or robust linear
regression (rlm from the MASS package).
Author: Johannes Ranke
Maintainer: Johannes Ranke
chemCal-0.1-27/chemCal/inst/doc/Makefile |only
chemCal-0.1-27/chemCal/inst/doc/chemCal-001.eps |only
chemCal-0.1-27/chemCal/inst/doc/chemCal-001.pdf |only
chemCal-0.1-27/chemCal/inst/doc/chemCal-002.eps |only
chemCal-0.1-27/chemCal/inst/doc/chemCal-002.pdf |only
chemCal-0.1-27/chemCal/inst/doc/chemCal.tex |only
chemCal-0.1-28/chemCal/DESCRIPTION | 10 +++++-----
chemCal-0.1-28/chemCal/MD5 | 22 ++++++++++++----------
chemCal-0.1-28/chemCal/NAMESPACE |only
chemCal-0.1-28/chemCal/data/din32645.rda |binary
chemCal-0.1-28/chemCal/inst/doc/chemCal.Rnw | 2 +-
chemCal-0.1-28/chemCal/inst/doc/chemCal.pdf |binary
chemCal-0.1-28/chemCal/vignettes |only
13 files changed, 18 insertions(+), 16 deletions(-)