Sun, 16 Sep 2012

Package oro.nifti updated to version 0.3.5 with previous version 0.3.3 dated 2012-04-21

Title: Rigorous - NIfTI+ANALYZE+AFNI Input / Output
Description: Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.
Author: Brandon Whitcher, Volker Schmid and Andrew Thornton, with contributions by Karsten Tabelow
Maintainer: Brandon Whitcher

Diff between oro.nifti versions 0.3.3 dated 2012-04-21 and 0.3.5 dated 2012-09-16

 DESCRIPTION                           |   14 ++++++-------
 MD5                                   |   15 +++++++-------
 R/niftiS4.R                           |    6 ++++-
 R/readS4.R                            |   36 +++++++++++++++++++++++++++-------
 R/zzz.R                               |   18 ++++-------------
 inst/doc/nifti.pdf                    |binary
 inst/doc/oro.nifti.pdf                |only
 man/read_nifti.Rd                     |   13 ++++++------
 tests/Examples/oro.nifti-Ex.Rout.save |   16 +++++++--------
 9 files changed, 69 insertions(+), 49 deletions(-)

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Package MALDIquant updated to version 1.3 with previous version 1.2 dated 2012-07-18

Title: Quantitative Analysis of Mass Spectrometry Data
Description: MALDIquant provides a complete analysis pipeline for MALDI-TOF and other mass spectrometry data. Distinctive features include baseline subtraction using the SNIP algorithm, peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.
Author: Sebastian Gibb [aut, cre], Korbinian Strimmer [ths]
Maintainer: Sebastian Gibb

Diff between MALDIquant versions 1.2 dated 2012-07-18 and 1.3 dated 2012-09-16

 MALDIquant-1.2/MALDIquant/man/createMassPeaks.Rd                  |only
 MALDIquant-1.2/MALDIquant/man/createMassSpectrum.Rd               |only
 MALDIquant-1.2/MALDIquant/man/estimateBaselineMedian.Rd           |only
 MALDIquant-1.3/MALDIquant/DESCRIPTION                             |   17 -
 MALDIquant-1.3/MALDIquant/MD5                                     |   42 ++-
 MALDIquant-1.3/MALDIquant/NAMESPACE                               |    5 
 MALDIquant-1.3/MALDIquant/NEWS                                    |  108 +++++-----
 MALDIquant-1.3/MALDIquant/R/AllClasses.R                          |    2 
 MALDIquant-1.3/MALDIquant/R/AllGenerics.R                         |   20 +
 MALDIquant-1.3/MALDIquant/R/calculateLabelPositions-methods.R     |only
 MALDIquant-1.3/MALDIquant/R/determineWarpingFunctions-functions.R |    5 
 MALDIquant-1.3/MALDIquant/R/findLocalMaxima-methods.R             |    6 
 MALDIquant-1.3/MALDIquant/R/isMassObjectList-functions.R          |    2 
 MALDIquant-1.3/MALDIquant/R/labelPeaks-methods.R                  |   23 +-
 MALDIquant-1.3/MALDIquant/R/subset-methods.R                      |only
 MALDIquant-1.3/MALDIquant/R/textLabelRects-functions.R            |only
 MALDIquant-1.3/MALDIquant/R/trim-methods.R                        |only
 MALDIquant-1.3/MALDIquant/data/fiedler2009subset.RData            |binary
 MALDIquant-1.3/MALDIquant/inst                                    |only
 MALDIquant-1.3/MALDIquant/man/AbstractMassObject-class.Rd         |   47 ++++
 MALDIquant-1.3/MALDIquant/man/MALDIquant-internal.Rd              |    4 
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 MALDIquant-1.3/MALDIquant/man/labelPeaks-methods.Rd               |   25 ++
 MALDIquant-1.3/MALDIquant/man/transformIntensity-methods.Rd       |    2 
 MALDIquant-1.3/MALDIquant/man/trim-methods.Rd                     |only
 28 files changed, 226 insertions(+), 93 deletions(-)

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New package DBKGrad with initial version 1.0
Package: DBKGrad
Type: Package
Title: Discrete Beta Kernel Graduation of mortality data
Version: 1.0
Date: 2012-09-16
Author: Angelo Mazza and Antonio Punzo
Maintainer: Angelo Mazza
Description: This package allows for nonparametric graduation of mortality rates using fixed or adaptive discrete beta kernel estimator.
License: GPL-2
LazyLoad: yes
Depends: minpack.lm
Packaged: 2012-09-16 15:41:17 UTC; Angelo
Repository: CRAN
Date/Publication: 2012-09-16 17:48:12

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Package RSQLite updated to version 0.11.2 with previous version 0.11.1 dated 2011-12-07

Title: SQLite interface for R
Description: Database Interface R driver for SQLite. This package embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine (version 3.7.14) is included.
Author: David A. James and Seth Falcon
Maintainer: Seth Falcon

Diff between RSQLite versions 0.11.1 dated 2011-12-07 and 0.11.2 dated 2012-09-16

 DESCRIPTION                     |   17 
 MD5                             |   10 
 inst/NEWS                       |    4 
 inst/UnitTests/dbGetInfo_test.R |    2 
 src/sqlite/sqlite3.c            |35262 ++++++++++++++++++++++------------------
 src/sqlite/sqlite3.h            |  529 
 6 files changed, 20289 insertions(+), 15535 deletions(-)

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Package qgraph updated to version 1.1.0 with previous version 1.0.5-2 dated 2012-07-19

Title: Network representations of relationships in data
Description: The qgraph package can be used to visualize data as networks.
Author: Sacha Epskamp, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp

Diff between qgraph versions 1.0.5-2 dated 2012-07-19 and 1.1.0 dated 2012-09-16

 qgraph-1.0.5-2/qgraph/man/qgraph.arrow.Rd                    |only
 qgraph-1.1.0/qgraph/DESCRIPTION                              |   12 
 qgraph-1.1.0/qgraph/MD5                                      |   73 
 qgraph-1.1.0/qgraph/NAMESPACE                                |   53 
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 qgraph-1.1.0/qgraph/R/Cent2EdgeNode.R                        |only
 qgraph-1.1.0/qgraph/R/DrawArrow.R                            |only
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 qgraph-1.1.0/qgraph/R/centrality.R                           |  244 
 qgraph-1.1.0/qgraph/R/mapusr2in.R                            |only
 qgraph-1.1.0/qgraph/R/qgraph.R                               | 3173 +++++------
 qgraph-1.1.0/qgraph/R/qgraph.lavaan.R                        | 1178 ++--
 qgraph-1.1.0/qgraph/R/qgraph.panel.R                         |  116 
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 qgraph-1.1.0/qgraph/R/qgraph_arrow.R                         |   10 
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 qgraph-1.1.0/qgraph/R/qgraph_loadings.R                      |  621 +-
 qgraph-1.1.0/qgraph/R/qgraph_sem.R                           | 1048 +--
 qgraph-1.1.0/qgraph/R/qgraph_semModel.R                      |  578 +-
 qgraph-1.1.0/qgraph/R/qgraph_svg.R                           |  358 -
 qgraph-1.1.0/qgraph/man/big5.Rd                              |   46 
 qgraph-1.1.0/qgraph/man/big5groups.Rd                        |   50 
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 qgraph-1.1.0/qgraph/man/plot.qgraph.Rd                       |   50 
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 qgraph-1.1.0/qgraph/man/qgraph-package.Rd                    |   70 
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 qgraph-1.1.0/qgraph/man/qgraph.layout.fruchtermanreingold.Rd |  202 
 qgraph-1.1.0/qgraph/man/qgraph.panel.Rd                      |   94 
 qgraph-1.1.0/qgraph/man/qgraph.semModel.Rd                   |  208 
 qgraph-1.1.0/qgraph/man/qgraph_efa.Rd                        |  104 
 qgraph-1.1.0/qgraph/man/qgraph_loadings.Rd                   |  120 
 qgraph-1.1.0/qgraph/man/qgraph_pca.Rd                        |  102 
 qgraph-1.1.0/qgraph/man/qgraph_sem.Rd                        |  286 
 qgraph-1.1.0/qgraph/man/qgraph_svg.Rd                        |  138 
 qgraph-1.1.0/qgraph/man/summary.qgraph.Rd                    |   58 
 41 files changed, 5933 insertions(+), 5775 deletions(-)

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Package JGR updated to version 1.7-11 with previous version 1.7-10 dated 2012-09-05

Title: JGR - Java GUI for R
Description: Java GUI for R - cross-platform, universal and unified Graphical User Interface for R. For full functionality on Windows and Mac OS X JGR requires a start application which depends on your OS. This can be downloaded from JGR website: http://rforge.net/JGR/
Author: Markus Helbig , Simon Urbanek, Ian Fellows
Maintainer: Markus Helbig

Diff between JGR versions 1.7-10 dated 2012-09-05 and 1.7-11 dated 2012-09-16

 DESCRIPTION       |   10 +++++-----
 MD5               |    8 ++++----
 NEWS              |    3 +++
 R/JGR.R           |   12 ++++++------
 inst/java/JGR.jar |binary
 5 files changed, 18 insertions(+), 15 deletions(-)

More information about JGR at CRAN
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