Title: Rigorous - NIfTI+ANALYZE+AFNI Input / Output
Diff between oro.nifti versions 0.3.3 dated 2012-04-21 and 0.3.5 dated 2012-09-16
Description: Functions for the input/output and visualization of
medical imaging data that follow either the ANALYZE, NIfTI or
AFNI formats. This package is part of the Rigorous Analytics
bundle.
Author: Brandon Whitcher, Volker Schmid and Andrew Thornton, with
contributions by Karsten Tabelow
Maintainer: Brandon Whitcher
DESCRIPTION | 14 ++++++-------
MD5 | 15 +++++++-------
R/niftiS4.R | 6 ++++-
R/readS4.R | 36 +++++++++++++++++++++++++++-------
R/zzz.R | 18 ++++-------------
inst/doc/nifti.pdf |binary
inst/doc/oro.nifti.pdf |only
man/read_nifti.Rd | 13 ++++++------
tests/Examples/oro.nifti-Ex.Rout.save | 16 +++++++--------
9 files changed, 69 insertions(+), 49 deletions(-)
Title: Quantitative Analysis of Mass Spectrometry Data
Diff between MALDIquant versions 1.2 dated 2012-07-18 and 1.3 dated 2012-09-16
Description: MALDIquant provides a complete analysis pipeline for
MALDI-TOF and other mass spectrometry data. Distinctive
features include baseline subtraction using the SNIP algorithm,
peak alignment using warping functions, handling of replicated
measurements as well as allowing spectra with different
resolutions.
Author: Sebastian Gibb [aut, cre], Korbinian Strimmer [ths]
Maintainer: Sebastian Gibb
MALDIquant-1.2/MALDIquant/man/createMassPeaks.Rd |only
MALDIquant-1.2/MALDIquant/man/createMassSpectrum.Rd |only
MALDIquant-1.2/MALDIquant/man/estimateBaselineMedian.Rd |only
MALDIquant-1.3/MALDIquant/DESCRIPTION | 17 -
MALDIquant-1.3/MALDIquant/MD5 | 42 ++-
MALDIquant-1.3/MALDIquant/NAMESPACE | 5
MALDIquant-1.3/MALDIquant/NEWS | 108 +++++-----
MALDIquant-1.3/MALDIquant/R/AllClasses.R | 2
MALDIquant-1.3/MALDIquant/R/AllGenerics.R | 20 +
MALDIquant-1.3/MALDIquant/R/calculateLabelPositions-methods.R |only
MALDIquant-1.3/MALDIquant/R/determineWarpingFunctions-functions.R | 5
MALDIquant-1.3/MALDIquant/R/findLocalMaxima-methods.R | 6
MALDIquant-1.3/MALDIquant/R/isMassObjectList-functions.R | 2
MALDIquant-1.3/MALDIquant/R/labelPeaks-methods.R | 23 +-
MALDIquant-1.3/MALDIquant/R/subset-methods.R |only
MALDIquant-1.3/MALDIquant/R/textLabelRects-functions.R |only
MALDIquant-1.3/MALDIquant/R/trim-methods.R |only
MALDIquant-1.3/MALDIquant/data/fiedler2009subset.RData |binary
MALDIquant-1.3/MALDIquant/inst |only
MALDIquant-1.3/MALDIquant/man/AbstractMassObject-class.Rd | 47 ++++
MALDIquant-1.3/MALDIquant/man/MALDIquant-internal.Rd | 4
MALDIquant-1.3/MALDIquant/man/MALDIquant-package.Rd | 11 -
MALDIquant-1.3/MALDIquant/man/createMassPeaks-functions.Rd |only
MALDIquant-1.3/MALDIquant/man/createMassSpectrum-functions.Rd |only
MALDIquant-1.3/MALDIquant/man/estimateBaselineMedian-functions.Rd |only
MALDIquant-1.3/MALDIquant/man/labelPeaks-methods.Rd | 25 ++
MALDIquant-1.3/MALDIquant/man/transformIntensity-methods.Rd | 2
MALDIquant-1.3/MALDIquant/man/trim-methods.Rd |only
28 files changed, 226 insertions(+), 93 deletions(-)
Title: SQLite interface for R
Diff between RSQLite versions 0.11.1 dated 2011-12-07 and 0.11.2 dated 2012-09-16
Description: Database Interface R driver for SQLite. This package
embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the
SQLite engine (version 3.7.14) is included.
Author: David A. James and Seth Falcon
Maintainer: Seth Falcon
DESCRIPTION | 17
MD5 | 10
inst/NEWS | 4
inst/UnitTests/dbGetInfo_test.R | 2
src/sqlite/sqlite3.c |35262 ++++++++++++++++++++++------------------
src/sqlite/sqlite3.h | 529
6 files changed, 20289 insertions(+), 15535 deletions(-)
Title: Network representations of relationships in data
Diff between qgraph versions 1.0.5-2 dated 2012-07-19 and 1.1.0 dated 2012-09-16
Description: The qgraph package can be used to visualize data as
networks.
Author: Sacha Epskamp, Angelique O. J. Cramer, Lourens J. Waldorp,
Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp
qgraph-1.0.5-2/qgraph/man/qgraph.arrow.Rd |only
qgraph-1.1.0/qgraph/DESCRIPTION | 12
qgraph-1.1.0/qgraph/MD5 | 73
qgraph-1.1.0/qgraph/NAMESPACE | 53
qgraph-1.1.0/qgraph/NEWS | 337 -
qgraph-1.1.0/qgraph/R/Cent2EdgeNode.R |only
qgraph-1.1.0/qgraph/R/DrawArrow.R |only
qgraph-1.1.0/qgraph/R/SelfLoop.R |only
qgraph-1.1.0/qgraph/R/centrality.R | 244
qgraph-1.1.0/qgraph/R/mapusr2in.R |only
qgraph-1.1.0/qgraph/R/qgraph.R | 3173 +++++------
qgraph-1.1.0/qgraph/R/qgraph.lavaan.R | 1178 ++--
qgraph-1.1.0/qgraph/R/qgraph.panel.R | 116
qgraph-1.1.0/qgraph/R/qgraphGUI.R |only
qgraph-1.1.0/qgraph/R/qgraph_arrow.R | 10
qgraph-1.1.0/qgraph/R/qgraph_cfa.R | 220
qgraph-1.1.0/qgraph/R/qgraph_growth.R | 330 -
qgraph-1.1.0/qgraph/R/qgraph_loadings.R | 621 +-
qgraph-1.1.0/qgraph/R/qgraph_sem.R | 1048 +--
qgraph-1.1.0/qgraph/R/qgraph_semModel.R | 578 +-
qgraph-1.1.0/qgraph/R/qgraph_svg.R | 358 -
qgraph-1.1.0/qgraph/man/big5.Rd | 46
qgraph-1.1.0/qgraph/man/big5groups.Rd | 50
qgraph-1.1.0/qgraph/man/centrality.Rd | 124
qgraph-1.1.0/qgraph/man/plot.qgraph.Rd | 50
qgraph-1.1.0/qgraph/man/print.qgraph.Rd | 58
qgraph-1.1.0/qgraph/man/qgraph-package.Rd | 70
qgraph-1.1.0/qgraph/man/qgraph.Rd | 853 +-
qgraph-1.1.0/qgraph/man/qgraph.animate.Rd | 308 -
qgraph-1.1.0/qgraph/man/qgraph.cfa.Rd | 206
qgraph-1.1.0/qgraph/man/qgraph.gui.Rd |only
qgraph-1.1.0/qgraph/man/qgraph.lavaan.Rd | 280
qgraph-1.1.0/qgraph/man/qgraph.layout.fruchtermanreingold.Rd | 202
qgraph-1.1.0/qgraph/man/qgraph.panel.Rd | 94
qgraph-1.1.0/qgraph/man/qgraph.semModel.Rd | 208
qgraph-1.1.0/qgraph/man/qgraph_efa.Rd | 104
qgraph-1.1.0/qgraph/man/qgraph_loadings.Rd | 120
qgraph-1.1.0/qgraph/man/qgraph_pca.Rd | 102
qgraph-1.1.0/qgraph/man/qgraph_sem.Rd | 286
qgraph-1.1.0/qgraph/man/qgraph_svg.Rd | 138
qgraph-1.1.0/qgraph/man/summary.qgraph.Rd | 58
41 files changed, 5933 insertions(+), 5775 deletions(-)
Title: JGR - Java GUI for R
Diff between JGR versions 1.7-10 dated 2012-09-05 and 1.7-11 dated 2012-09-16
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR website:
http://rforge.net/JGR/
Author: Markus Helbig
Maintainer: Markus Helbig
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
NEWS | 3 +++
R/JGR.R | 12 ++++++------
inst/java/JGR.jar |binary
5 files changed, 18 insertions(+), 15 deletions(-)