Wed, 19 Sep 2012

Package planar updated to version 1.2.4 with previous version 1.2.2 dated 2012-07-04

Title: Multilayer optics
Description: Solves the electromagnetic problem of reflection and transmission at a multilayer planar interface. Also computes the decay rates for a dipolar emitter near a multilayer structure.
Author: baptiste Auguie
Maintainer: baptiste Auguie

Diff between planar versions 1.2.2 dated 2012-07-04 and 1.2.4 dated 2012-09-19

 planar-1.2.2/planar/inst/tests/.Rhistory                           |only
 planar-1.2.2/planar/man/invert_incidence.Rd                        |only
 planar-1.2.4/planar/DESCRIPTION                                    |    8 -
 planar-1.2.4/planar/MD5                                            |   20 ++--
 planar-1.2.4/planar/NAMESPACE                                      |    6 -
 planar-1.2.4/planar/NEWS                                           |    7 +
 planar-1.2.4/planar/R/multilayer.r                                 |    4 
 planar-1.2.4/planar/R/themes.r                                     |   47 +++-------
 planar-1.2.4/planar/demo/LFIEF_angular_pattern_dummy.r             |    8 -
 planar-1.2.4/planar/demo/LFIEF_angular_pattern_kretschmann.r       |   14 +-
 planar-1.2.4/planar/inst/animation                                 |only
 planar-1.2.4/planar/inst/tests/LFIEF_angular_pattern_kretschmann.r |only
 planar-1.2.4/planar/man/field.profile.Rd                           |    2 
 planar-1.2.4/planar/man/invert_stack.Rd                            |only
 14 files changed, 54 insertions(+), 62 deletions(-)

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New package namespace with initial version 0.9.1
Package: namespace
Type: Package
Title: Provide namespace managment functions not (yet) present in base R
Version: 0.9.1
Date: 2012-09-19
Author: Winston Chang, Daniel Adler, Hadley Wickham, Gregory R. Warnes, R Core Team
Maintainer: Gregory R. Warnes
Description: This package provides user-level functions to manage namespaces not (yet) available in base R: 'registerNamespace', 'unregisterNamespace', 'makeNamespace', and 'getRegisteredNamespace' ('makeNamespaces' is extracted from the R 'base' package source code: src/library/base/R/namespace.R)
License: GPL-2
Packaged: 2012-09-19 17:17:15 UTC; warnegr1
Repository: CRAN
Date/Publication: 2012-09-19 22:10:57

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Package ks updated to version 1.8.10 with previous version 1.8.9 dated 2012-09-06

Title: Kernel smoothing
Description: Kernel smoothers for univariate and multivariate data
Author: Tarn Duong
Maintainer: Tarn Duong

Diff between ks versions 1.8.9 dated 2012-09-06 and 1.8.10 dated 2012-09-19

 CHANGELOG        |    3 +++
 DESCRIPTION      |    8 ++++----
 MD5              |   10 +++++-----
 R/kde.R          |    2 +-
 inst/doc/kde.pdf |binary
 man/plot.kde.Rd  |    4 ++--
 6 files changed, 15 insertions(+), 12 deletions(-)

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Package ClustOfVar updated to version 0.7 with previous version 0.6 dated 2011-11-03

Title: Clustering of variables
Description: Cluster analysis of a set of variables. Variables can be quantitative, qualitative or a mixture of both.
Author: Marie Chavent and Vanessa Kuentz and Benoit Liquet and Jerome Saracco
Maintainer:

Diff between ClustOfVar versions 0.6 dated 2011-11-03 and 0.7 dated 2012-09-19

 DESCRIPTION               |   12 +++++++-----
 MD5                       |   15 ++++++++-------
 R/kmeansvar.R             |    4 ++--
 R/summary.clustvar.R      |    4 ++--
 inst                      |only
 man/ClustOfVar-package.Rd |    5 +++--
 man/hclustvar.Rd          |    8 +++++++-
 man/kmeansvar.Rd          |    9 ++++++++-
 man/stability.Rd          |   12 +++++++++---
 9 files changed, 46 insertions(+), 23 deletions(-)

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Package Actigraphy updated to version 1.1 with previous version 1.0 dated 2012-07-13

Title: Actigraphy Data Analysis
Description: This package implements functional linear modeling and analysis for actigraphy data.
Author: William Shannon, Tao Li, Hong Xian, Jia Wang, Elena Deych, Carlos Gonzalez
Maintainer: Berkley Shands

Diff between Actigraphy versions 1.0 dated 2012-07-13 and 1.1 dated 2012-09-19

 DESCRIPTION               |   10 +++++-----
 MD5                       |   29 +++++++++++++++++++----------
 R/Ftest.R                 |   15 +++++++++------
 R/cat_flm_plot.R          |   18 ++++++++++--------
 R/cont_flm_plot.R         |   20 +++++++++++---------
 R/flm_cate.R              |    6 +++---
 R/flm_ftest.R             |    6 ++++--
 inst                      |only
 man/Actigraphy-package.Rd |   12 ++++++------
 man/cat_flm_plot.Rd       |    7 ++++---
 man/cont_flm_plot.Rd      |   21 +++++++++++++--------
 man/flm_cate.Rd           |    3 ++-
 vignettes                 |only
 13 files changed, 86 insertions(+), 61 deletions(-)

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Package rcppbugs updated to version 0.1.1 with previous version 0.1.0 dated 2012-05-23

Title: R binding for cppbugs
Description: R binding for cppbugs
Author: Whit Armstrong
Maintainer: Whit Armstrong

Diff between rcppbugs versions 0.1.0 dated 2012-05-23 and 0.1.1 dated 2012-09-19

 rcppbugs-0.1.0/rcppbugs/.gitignore                  |only
 rcppbugs-0.1.0/rcppbugs/.gitmodules                 |only
 rcppbugs-0.1.0/rcppbugs/src/cppbugs/.git            |only
 rcppbugs-0.1.0/rcppbugs/src/cppbugs/.gitignore      |only
 rcppbugs-0.1.0/rcppbugs/src/cppbugs/test/.gitignore |only
 rcppbugs-0.1.1/rcppbugs/DESCRIPTION                 |    6 +++---
 rcppbugs-0.1.1/rcppbugs/MD5                         |    5 +++--
 rcppbugs-0.1.1/rcppbugs/src/interface.cpp           |   14 ++++++--------
 rcppbugs-0.1.1/rcppbugs/tests/logp.r                |only
 9 files changed, 12 insertions(+), 13 deletions(-)

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New package MTurkR with initial version 0.1
Package: MTurkR
Type: Package
Title: Access to Amazon Mechanical Turk Requester API
Version: 0.1
Date: 2012-09-18
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper
Depends: bitops, RCurl, digest, XML
Description: This package provides access to the Amazon Mechanical Turk (MTurk) Requester API via authenticated HTTP requests executed with the RCurl package and a number of functions to translate API calls into R data structures (using the XML package).
License: GPL-2
URL: http://www.thomasleeper.com/MTurkR
Packaged: 2012-09-18 23:51:20 UTC; Thomas
Repository: CRAN
Date/Publication: 2012-09-19 10:08:22

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New package NScluster with initial version 1.0.0
Package: NScluster
Version: 1.0.0
Title: Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models
Author: The Institute of Statistical Mathematics, based on the program by Ushio Tanaka
Maintainer: Masami Saga
Depends: R (>= 2.9.0)
Description: This package simulate and estimate spatial clustered point patterns of the Neyman-Scott model and their extensions.
License: GPL (>= 2)
BugReports: ismrp@jasp.ism.ac.jp
Packaged: 2012-09-19 06:27:47 UTC; msaga
Repository: CRAN
Date/Publication: 2012-09-19 07:58:16

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Package openair updated to version 0.7-0 with previous version 0.6-0 dated 2012-05-11

Title: Tools for the analysis of air pollution data
Description: Tools to analyse, interpret and understand air pollution data. Data are typically hourly time series and both monitoring data and dispersion model output can be analysed. Many functions can also be applied to other data, including meteorological and traffic data.
Author: David Carslaw and Karl Ropkins
Maintainer: David Carslaw

Diff between openair versions 0.6-0 dated 2012-05-11 and 0.7-0 dated 2012-09-19

 openair-0.6-0/openair/openair.Rproj              |only
 openair-0.7-0/openair/DESCRIPTION                |   13 
 openair-0.7-0/openair/MD5                        |  127 +++---
 openair-0.7-0/openair/NEWS                       |   28 +
 openair-0.7-0/openair/R/GoogleMapsPlot.R         |  110 ++++-
 openair-0.7-0/openair/R/TaylorDiagram.R          |   20 -
 openair-0.7-0/openair/R/TheilSen.R               |   65 +--
 openair-0.7-0/openair/R/calcPercentile.R         |    2 
 openair-0.7-0/openair/R/calendarPlot.R           |  332 ++++++++++------
 openair-0.7-0/openair/R/checkPrep.R              |    8 
 openair-0.7-0/openair/R/conditionalEval.R        |    2 
 openair-0.7-0/openair/R/conditionalQuantile.R    |   22 -
 openair-0.7-0/openair/R/corPlot.R                |   37 +
 openair-0.7-0/openair/R/cutData.R                |   38 +
 openair-0.7-0/openair/R/date.breaks.R            |   19 
 openair-0.7-0/openair/R/import.R                 |   25 -
 openair-0.7-0/openair/R/importTraj.R             |   38 +
 openair-0.7-0/openair/R/linearRelation.R         |   23 -
 openair-0.7-0/openair/R/modStats.R               |   21 -
 openair-0.7-0/openair/R/percentileRose.R         |   60 +--
 openair-0.7-0/openair/R/polarAnnulus.R           |  123 ++----
 openair-0.7-0/openair/R/polarCluster.R           |   11 
 openair-0.7-0/openair/R/polarFreq.R              |  109 ++---
 openair-0.7-0/openair/R/polarPlot.R              |  111 +++--
 openair-0.7-0/openair/R/quickText.R              |   54 +-
 openair-0.7-0/openair/R/scatterPlot.R            |  139 ++++---
 openair-0.7-0/openair/R/smoothTrend.R            |   43 --
 openair-0.7-0/openair/R/summaryPlot.R            |    2 
 openair-0.7-0/openair/R/timeAverage.R            |  100 ++---
 openair-0.7-0/openair/R/timePlot.R               |   94 ++--
 openair-0.7-0/openair/R/timeVariation.R          |   41 +-
 openair-0.7-0/openair/R/trajCluster.R            |   39 +
 openair-0.7-0/openair/R/trajPlot.R               |  145 ++++++-
 openair-0.7-0/openair/R/trendLevel.R             |   10 
 openair-0.7-0/openair/R/utilities.R              |   33 +
 openair-0.7-0/openair/R/windRose.R               |  453 ++++++++++++++---------
 openair-0.7-0/openair/data/mydata.RData          |binary
 openair-0.7-0/openair/man/GoogleMapsPlot.Rd      |   37 +
 openair-0.7-0/openair/man/TaylorDiagram.Rd       |   31 -
 openair-0.7-0/openair/man/TheilSen.Rd            |   41 +-
 openair-0.7-0/openair/man/calcPercentile.Rd      |    2 
 openair-0.7-0/openair/man/calendarPlot.Rd        |   79 ++--
 openair-0.7-0/openair/man/conditionalQuantile.Rd |   21 -
 openair-0.7-0/openair/man/corPlot.Rd             |   13 
 openair-0.7-0/openair/man/cutData.Rd             |   32 +
 openair-0.7-0/openair/man/import.Rd              |   30 -
 openair-0.7-0/openair/man/importTraj.Rd          |   45 +-
 openair-0.7-0/openair/man/linearRelation.Rd      |   25 -
 openair-0.7-0/openair/man/modStats.Rd            |    7 
 openair-0.7-0/openair/man/openair-package.Rd     |   34 -
 openair-0.7-0/openair/man/percentileRose.Rd      |   28 -
 openair-0.7-0/openair/man/polarAnnulus.Rd        |   64 +--
 openair-0.7-0/openair/man/polarCluster.Rd        |   14 
 openair-0.7-0/openair/man/polarFreq.Rd           |   69 +--
 openair-0.7-0/openair/man/polarPlot.Rd           |   69 ++-
 openair-0.7-0/openair/man/scatterPlot.Rd         |  108 ++---
 openair-0.7-0/openair/man/selectByDate.Rd        |    8 
 openair-0.7-0/openair/man/smoothTrend.Rd         |   25 -
 openair-0.7-0/openair/man/timeAverage.Rd         |   76 ++-
 openair-0.7-0/openair/man/timePlot.Rd            |   87 ++--
 openair-0.7-0/openair/man/timeVariation.Rd       |   46 +-
 openair-0.7-0/openair/man/trajCluster.Rd         |   35 -
 openair-0.7-0/openair/man/trajPlot.Rd            |   47 +-
 openair-0.7-0/openair/man/trendLevel.Rd          |   12 
 openair-0.7-0/openair/man/windRose.Rd            |  105 +++--
 65 files changed, 2185 insertions(+), 1502 deletions(-)

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New package gtx with initial version 0.0.7
Package: gtx
Version: 0.0.7
Date: 2012-09-18
Title: Genetics ToolboX
Author: Toby Johnson
Maintainer: Toby Johnson
Depends: R (>= 2.4.0), survival
Description: Assorted tools for genetic association analyses. The current focus is on implementing (either exactly or approximately) regression analyses using summary statistics instead of using subject-specific data. So far, functions exist to support multi-SNP risk score analyses, multi-SNP conditional regression analyses, and multi-phenotype analyses, using summary statistics. There are helper functions for reading and manipulating subject-specific genotype data, which provide a platform for calculating the summary statistics, or for using R to conduct other analyses not supported by specific GWAS analysis tools.
License: GPL (>= 2)
Packaged: 2012-09-18 20:53:35 UTC; tj357745
X-CRAN-Comment: This package has been archived: it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders
Repository: CRAN
Date/Publication: 2012-09-19 10:46:18

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Package DBKGrad updated to version 1.01 with previous version 1.0 dated 2012-09-16

Title: Discrete Beta Kernel Graduation of mortality data
Description: This package allows for nonparametric graduation of mortality rates using fixed or adaptive discrete beta kernel estimator.
Author: Angelo Mazza and Antonio Punzo
Maintainer: Angelo Mazza

Diff between DBKGrad versions 1.0 dated 2012-09-16 and 1.01 dated 2012-09-19

 DESCRIPTION    |   10 +++++-----
 MD5            |    4 ++--
 man/dbkGrad.Rd |    5 +----
 3 files changed, 8 insertions(+), 11 deletions(-)

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Package ccaPP updated to version 0.2.0 with previous version 0.1.1 dated 2012-08-16

Title: (Robust) canonical correlation analysis via projection pursuit
Description: Canonical correlation analysis and maximum correlation via projection pursuit, as well as fast implementations of correlation estimators, with a focus on robust and nonparametric methods.
Author: Andreas Alfons [aut, cre], David Simcha [ctb]
Maintainer: Andreas Alfons

Diff between ccaPP versions 0.1.1 dated 2012-08-16 and 0.2.0 dated 2012-09-19

 DESCRIPTION          |   27 +++++++++----------
 MD5                  |   29 +++++++++++---------
 NAMESPACE            |    3 ++
 NEWS                 |   25 +++++++++++++++++
 R/cca.R              |   72 +++++++++++++++++++++++++++++++++++----------------
 R/maxCor.R           |only
 R/permTest.R         |   43 +++++++++++++++++-------------
 R/print.R            |   14 +++++++++
 R/utils.R            |   17 +++++++-----
 man/ccaGrid.Rd       |   26 ++++++++++++++----
 man/ccaPP-package.Rd |   16 +++++++----
 man/ccaProj.Rd       |   24 +++++++++++++----
 man/maxCorGrid.Rd    |only
 man/maxCorProj.Rd    |only
 man/permTest.Rd      |   20 +++++++-------
 src/cca.cpp          |   68 +++++++++++++++++++++++++++++++++---------------
 src/cca.h            |    2 -
 17 files changed, 263 insertions(+), 123 deletions(-)

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Package support.CEs updated to version 0.2-4 with previous version 0.2-3 dated 2012-06-14

Title: Basic functions for supporting an implementation of choice experiments
Description: The support.CEs package provides seven basic functions that support an implementation of choice experiments.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki

Diff between support.CEs versions 0.2-3 dated 2012-06-14 and 0.2-4 dated 2012-09-19

 DESCRIPTION                |    8 ++++----
 MD5                        |   27 ++++++++++++++-------------
 NEWS                       |    4 ++++
 R/questionnaire.R          |   10 +++++++++-
 inst                       |only
 man/Lma.design.Rd          |    2 ++
 man/gofm.Rd                |    2 ++
 man/make.dataset.Rd        |    2 ++
 man/make.design.matrix.Rd  |    2 ++
 man/mwtp.Rd                |    2 ++
 man/questionnaire.Rd       |    3 +++
 man/rotation.design.Rd     |    2 ++
 man/support.CEs-package.Rd |    7 +++++--
 man/syn.res1.Rd            |    3 +++
 man/syn.res2.Rd            |    3 +++
 15 files changed, 57 insertions(+), 20 deletions(-)

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Package epicalc updated to version 2.15.1.0 with previous version 2.14.1.6 dated 2012-02-18

Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
Author: Virasakdi Chongsuvivatwong
Maintainer: Virasakdi Chongsuvivatwong

Diff between epicalc versions 2.14.1.6 dated 2012-02-18 and 2.15.1.0 dated 2012-09-19

 DESCRIPTION         |    8 ++++----
 MD5                 |    5 +++--
 R/epicalc.R         |   46 ++++++++++++++++++++++++++++++++++++++++++++++
 man/tally.events.rd |only
 4 files changed, 53 insertions(+), 6 deletions(-)

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