Title: Functions for calculating tolerance intervals
Diff between tolerance versions 0.5.1 dated 2012-08-28 and 0.5.2 dated 2012-09-22
Description: Tolerance limits provide the limits between which we can
expect to find a specified proportion of a population with a
given level of confidence. This package provides functions for
estimating tolerance limits for various distributions.
Plotting is also available for tolerance limits of continuous
random variables.
Author: Derek S. Young
Maintainer: Derek S. Young
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 10 ++++++++++
R/Ktable.R | 2 +-
R/mvtolregion.R | 38 ++++++++++++++++++++++++++++++++++----
man/mvtolregion.Rd | 31 +++++++++++++++++++++++--------
man/tolerance.package.Rd | 4 ++--
7 files changed, 80 insertions(+), 25 deletions(-)
Title: Inference of trait associations with SNP haplotypes and other
attributes using the EM Algorithm
Diff between hapassoc versions 1.2-5 dated 2012-04-05 and 1.2-6 dated 2012-09-22
Description: The following R functions are used for inference of trait
associations with haplotypes and other covariates in
generalized linear models. The functions are developed
primarily for data collected in cohort or cross-sectional
studies. They can accommodate uncertain haplotype phase and
handle missing genotypes at some SNPs.
Author: K. Burkett
Maintainer: K. Burkett
hapassoc-1.2-5/hapassoc/R/binomialNoWarn.R |only
hapassoc-1.2-6/hapassoc/DESCRIPTION | 8 +-
hapassoc-1.2-6/hapassoc/MD5 | 9 +-
hapassoc-1.2-6/hapassoc/R/hapassoc.R | 88 ++++++++++++++++++++++----
hapassoc-1.2-6/hapassoc/inst/ChangeLog | 5 +
hapassoc-1.2-6/hapassoc/inst/doc/hapassoc.pdf |binary
6 files changed, 88 insertions(+), 22 deletions(-)
Title: Quantile Regression
Diff between quantreg versions 4.90 dated 2012-09-05 and 4.91 dated 2012-09-22
Description: Quantile regression and related methods.
Author: Roger Koenker
Maintainer: Roger Koenker
DESCRIPTION | 6 +++---
MD5 | 16 ++++++++--------
inst/ChangeLog | 7 +++++++
inst/doc/engelcoef.pdf |binary
inst/doc/rq.pdf |binary
man/plot.summary.rqs.Rd | 7 ++++++-
man/summary.rq.Rd | 6 +++++-
src/ratfor/rqfnc.r | 2 +-
src/rqfnc.f | 2 +-
9 files changed, 31 insertions(+), 15 deletions(-)
Title: Multidimensional Item Response Theory
Diff between mirt versions 0.3.0 dated 2012-08-23 and 0.4.0 dated 2012-09-22
Description: Analysis of dichotomous and polytomous response data using
latent trait models under the Item Response Theory paradigm.
Includes univariate and multivariate one-, two-, three-, and
four-parameter logistic models, graded response models,
generalized partial credit models, nominal models, multiple
choice models, and multivariate partially-compensatory models.
These can be used in an exploratory or confirmatory manner with
optional user defined linear constraints. Exploratory models
can be estimated via quadrature or stochastic methods, a
generalized confirmatory bi-factor analysis is included, and
confirmatory models can be fit with a Metropolis-Hastings
Robbins-Monro algorithm which can include polynomial or product
constructed latent traits. Additionally, multiple group
analysis may be performed for unidimensional or
multidimensional item response models for detecting
differential item functioning.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers
mirt-0.3.0/mirt/COPYING |only
mirt-0.3.0/mirt/R/bfactor-methods.R |only
mirt-0.3.0/mirt/R/confmirt-methods.R |only
mirt-0.3.0/mirt/R/mirt-methods.R |only
mirt-0.3.0/mirt/ToDo |only
mirt-0.3.0/mirt/inst/tests/test-confmirt.R |only
mirt-0.3.0/mirt/inst/tests/test-mirt.R |only
mirt-0.3.0/mirt/man/bfactorClass-class.Rd |only
mirt-0.3.0/mirt/man/confmirtClass-class.Rd |only
mirt-0.3.0/mirt/man/fscores-methods.Rd |only
mirt-0.3.0/mirt/man/itemplot-methods.Rd |only
mirt-0.3.0/mirt/man/mirtClass-class.Rd |only
mirt-0.4.0/mirt/DESCRIPTION | 30 -
mirt-0.4.0/mirt/MD5 | 108 ++--
mirt-0.4.0/mirt/NAMESPACE | 15
mirt-0.4.0/mirt/NEWS | 55 ++
mirt-0.4.0/mirt/R/00-classes.R | 183 ++-----
mirt-0.4.0/mirt/R/01-itemtypes.R | 9
mirt-0.4.0/mirt/R/02-item_methods.R | 431 ++++++++++++-----
mirt-0.4.0/mirt/R/Confirmatory-methods.R |only
mirt-0.4.0/mirt/R/EMstep.R | 220 ++++++++-
mirt-0.4.0/mirt/R/EMstep.group.R |only
mirt-0.4.0/mirt/R/Exploratory-methods.R |only
mirt-0.4.0/mirt/R/LoadPars.R | 62 +-
mirt-0.4.0/mirt/R/MHRM.R | 52 +-
mirt-0.4.0/mirt/R/MHRM.group.R |only
mirt-0.4.0/mirt/R/MultipleGroup-methods.R |only
mirt-0.4.0/mirt/R/PrepData.R |only
mirt-0.4.0/mirt/R/bfactor.R | 416 ++---------------
mirt-0.4.0/mirt/R/calcLogLik.R | 55 +-
mirt-0.4.0/mirt/R/confmirt.R | 272 ++++-------
mirt-0.4.0/mirt/R/confmirt.model.R | 4
mirt-0.4.0/mirt/R/extract.item.R |only
mirt-0.4.0/mirt/R/fscores.R | 270 ++++-------
mirt-0.4.0/mirt/R/itemfit.R |only
mirt-0.4.0/mirt/R/iteminfo.R |only
mirt-0.4.0/mirt/R/itemplot.R | 105 ++--
mirt-0.4.0/mirt/R/mirt-package.R | 19
mirt-0.4.0/mirt/R/mirt.R | 504 +++++++--------------
mirt-0.4.0/mirt/R/model.elements.R |only
mirt-0.4.0/mirt/R/multipleGroup.R |only
mirt-0.4.0/mirt/R/personfit.R |only
mirt-0.4.0/mirt/R/polymirt.R | 2
mirt-0.4.0/mirt/R/simdata.R | 9
mirt-0.4.0/mirt/R/utils.R | 240 ++++------
mirt-0.4.0/mirt/R/wald.R |only
mirt-0.4.0/mirt/README.md | 29 -
mirt-0.4.0/mirt/inst/tests/confmods/MGmodel1 |only
mirt-0.4.0/mirt/inst/tests/confmods/MGmodelg1 |only
mirt-0.4.0/mirt/inst/tests/confmods/MGmodelg2 |only
mirt-0.4.0/mirt/inst/tests/confmods/model1 | 4
mirt-0.4.0/mirt/inst/tests/test-bfactor.R | 30 -
mirt-0.4.0/mirt/inst/tests/test-confmirtOne.R |only
mirt-0.4.0/mirt/inst/tests/test-confmirtTwo.R |only
mirt-0.4.0/mirt/inst/tests/test-mirtOne.R |only
mirt-0.4.0/mirt/inst/tests/test-mirtTwo.R |only
mirt-0.4.0/mirt/inst/tests/test-multipleGroupOne.R |only
mirt-0.4.0/mirt/inst/tests/test-multipleGroupTwo.R |only
mirt-0.4.0/mirt/man/ConfirmatoryClass-class.Rd |only
mirt-0.4.0/mirt/man/ExploratoryClass-class.Rd |only
mirt-0.4.0/mirt/man/MultipleGroupClass-class.Rd |only
mirt-0.4.0/mirt/man/bfactor.Rd | 145 +-----
mirt-0.4.0/mirt/man/calcLogLik-methods.Rd | 21
mirt-0.4.0/mirt/man/confmirt.Rd | 117 +++-
mirt-0.4.0/mirt/man/confmirt.model.Rd | 5
mirt-0.4.0/mirt/man/extract.item.Rd |only
mirt-0.4.0/mirt/man/fscores.Rd |only
mirt-0.4.0/mirt/man/itemfit.Rd |only
mirt-0.4.0/mirt/man/iteminfo.Rd |only
mirt-0.4.0/mirt/man/itemplot.Rd |only
mirt-0.4.0/mirt/man/mirt-package.Rd | 22
mirt-0.4.0/mirt/man/mirt.Rd | 227 ++++++---
mirt-0.4.0/mirt/man/multipleGroup.Rd |only
mirt-0.4.0/mirt/man/personfit.Rd |only
mirt-0.4.0/mirt/man/polymirt.Rd | 2
mirt-0.4.0/mirt/man/simdata.Rd | 4
mirt-0.4.0/mirt/man/wald.Rd |only
mirt-0.4.0/mirt/src/fullScores.cpp |only
78 files changed, 1792 insertions(+), 1875 deletions(-)
Title: Segmented relationships in regression models with
breakpoints/changepoints estimation
Diff between segmented versions 0.2-9.2 dated 2012-07-12 and 0.2-9.3 dated 2012-09-22
Description: Given a (generalized) linear model, segmented `updates'
the model by adding one or more segmented relationships.
Several variables with multiple breakpoints are allowed.
Author: Vito M.R. Muggeo
Maintainer: Vito M.R. Muggeo
DESCRIPTION | 8 +++---
MD5 | 38 ++++++++++++++---------------
NEWS | 34 ++++++++++++++++----------
R/broken.line.r | 3 +-
R/draw.history.R | 61 ++++++++++++++++++++++++++++++++++++++++-------
R/intercept.r | 2 -
R/plot.segmented.R | 4 +--
R/seg.glm.fit.r | 20 +++++++++++----
R/seg.lm.fit.r | 16 +++++++-----
R/segmented.glm.R | 24 +++++++++++++-----
R/segmented.lm.R | 26 ++++++++++++++++----
man/broken.line.Rd | 8 +++---
man/confint.segmented.Rd | 3 +-
man/draw.history.Rd | 14 +++++++---
man/intercept.Rd | 2 -
man/lines.segmented.Rd | 16 ++++++------
man/plot.segmented.Rd | 14 +++++-----
man/seg.control.Rd | 12 ++++++---
man/segmented-package.Rd | 4 +--
man/segmented.Rd | 42 +++++++++++++++++++-------------
20 files changed, 234 insertions(+), 117 deletions(-)
Title: Integrating Phylogenetics and Climatic Niche Modeling
Diff between phyloclim versions 0.8.1 dated 2011-01-21 and 0.9-0 dated 2012-09-22
Description: This package implements some recently developed methods in
phyloclimatic modeling.
Author: Christoph Heibl, Clement Calenge (\code{import.ascii})
Maintainer: Christoph Heibl
phyloclim-0.8.1/phyloclim/R/getDI.R |only
phyloclim-0.8.1/phyloclim/R/plotBackgroundSimilarity.R |only
phyloclim-0.8.1/phyloclim/R/plotNicheEquivalence.R |only
phyloclim-0.8.1/phyloclim/data/equ.RData |only
phyloclim-0.8.1/phyloclim/data/palmatifoliae_pno.RData |only
phyloclim-0.8.1/phyloclim/data/palmatifoliae_tree.RData |only
phyloclim-0.8.1/phyloclim/data/sim.RData |only
phyloclim-0.8.1/phyloclim/man/descendants.Rd |only
phyloclim-0.8.1/phyloclim/man/internalFunctions.Rd |only
phyloclim-0.8.1/phyloclim/man/palmatifoliae_pno.Rd |only
phyloclim-0.8.1/phyloclim/man/palmatifoliae_tree.Rd |only
phyloclim-0.8.1/phyloclim/man/plotNicheEquivalency.Rd |only
phyloclim-0.9-0/phyloclim/ChangeLog | 65 ++++
phyloclim-0.9-0/phyloclim/DESCRIPTION | 14
phyloclim-0.9-0/phyloclim/MD5 |only
phyloclim-0.9-0/phyloclim/NAMESPACE |only
phyloclim-0.9-0/phyloclim/R/bg.similarity.test.R | 232 ++++++++--------
phyloclim-0.9-0/phyloclim/R/di.enm.R |only
phyloclim-0.9-0/phyloclim/R/di.pno.R |only
phyloclim-0.9-0/phyloclim/R/import.asc.r |only
phyloclim-0.9-0/phyloclim/R/niche.equivalency.test.R | 173 ++++++-----
phyloclim-0.9-0/phyloclim/R/niche.overlap.R | 32 +-
phyloclim-0.9-0/phyloclim/R/noi.R | 40 ++
phyloclim-0.9-0/phyloclim/R/plot.ntest.R |only
phyloclim-0.9-0/phyloclim/R/plotAncClim.R | 110 ++++---
phyloclim-0.9-0/phyloclim/R/plotPNO.R | 16 -
phyloclim-0.9-0/phyloclim/R/pno.R | 125 +++++---
phyloclim-0.9-0/phyloclim/R/print.ntest.R |only
phyloclim-0.9-0/phyloclim/R/sister.R | 4
phyloclim-0.9-0/phyloclim/data/PNO.rda |only
phyloclim-0.9-0/phyloclim/data/equ.rda |only
phyloclim-0.9-0/phyloclim/data/sim.rda |only
phyloclim-0.9-0/phyloclim/data/sites.rda |only
phyloclim-0.9-0/phyloclim/data/tree.rda |only
phyloclim-0.9-0/phyloclim/inst |only
phyloclim-0.9-0/phyloclim/man/age.range.correlation.Rd | 17 -
phyloclim-0.9-0/phyloclim/man/anc.clim.Rd | 12
phyloclim-0.9-0/phyloclim/man/equ.Rd | 40 ++
phyloclim-0.9-0/phyloclim/man/hypothesis.tests.Rd | 104 +++++--
phyloclim-0.9-0/phyloclim/man/niche.overlap.Rd | 11
phyloclim-0.9-0/phyloclim/man/palmatifoliae.Rd |only
phyloclim-0.9-0/phyloclim/man/phyloclim-internal.Rd |only
phyloclim-0.9-0/phyloclim/man/phyloclim-package.Rd | 17 -
phyloclim-0.9-0/phyloclim/man/plotAncClim.Rd | 42 ++
phyloclim-0.9-0/phyloclim/man/plotPNO.Rd | 6
45 files changed, 676 insertions(+), 384 deletions(-)
Title: Maximum likelihood unit root test
Diff between mleur versions 1.0-4 dated 2011-08-20 and 1.0-5 dated 2012-09-22
Description: Provides functions for unit root testing using MLE method
Author: A. I. McLeod, Hao Yu and Ying Zhang
Maintainer:
DESCRIPTION | 10 +++++-----
MD5 | 5 +++--
NAMESPACE |only
man/mleur-package.Rd | 4 ++--
4 files changed, 10 insertions(+), 9 deletions(-)
Title: bild: a package for BInary Longitudinal Data
Diff between bild versions 1.0-4 dated 2012-02-01 and 1.1-1 dated 2012-09-22
Description: bild performs logistic regression for binary longitudinal
data, allowing for serial dependence among observations from a
given individual and a random intercept term. Estimation is via
maximization of the exact likelihood of a suitably defined
model. Missing values and unbalanced data are allowed, with
some restrictions.
Author: M. Helena Gonçalves, M. Salomé Cabral and Adelchi Azzalini,
apart from a set of Fortran-77 subroutines written by R.
Piessens and E. de Doncker, belonging to the suite "Quadpack"
Maintainer: M. Helena Gonçalves
DESCRIPTION | 8 -
MD5 | 22 ++--
R/anova_bild.R |only
R/bild.R | 249 ++++++++++++++++++++++++++++++++++++++++++++++---
R/plot_bild_missing.R | 6 -
history.txt | 9 +
man/airpollution.rd | 10 -
man/anova-methods.Rd |only
man/bild-class.Rd | 1
man/bild.Rd | 13 +-
man/locust.rd | 29 ++---
man/plot-methods.Rd | 25 ++--
man/summary-methods.Rd | 2
13 files changed, 303 insertions(+), 71 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-04-02 1.0
Title: Gini methodology-based correlation and clustering analysis of
microarray and RNA-Seq gene expression data
Diff between rsgcc versions 1.0.3 dated 2012-08-01 and 1.0.4 dated 2012-09-22
Description: This package provides functions for calculating
associations between two genes with the mutual informaiton (MI)
method and several correlation methods, including the Gini
correlation coefficient (GCC), the Pearson's product moment
correlation coefficient (PCC), the Kendall tau rank correlation
coefficient (KCC), the Spearman's rank correlation coefficient
(SCC) and the Tukey's biweight correlation coefficient (BiWt).
It can also been implemented to perform the correlation and
clustering analysis of transcriptomic data profiled by
microarray and RNA-Seq technologies. Additionally, this package
can be further applied to construct gene co-expression networks
(GCNs).
Author: Chuang Ma, Xiangfeng Wang
Maintainer: Chuang Ma
DESCRIPTION | 33 ++++++++++-----------
MD5 | 19 +++++++++---
NAMESPACE | 1
R/rsgcc.R | 76 +++++++++++++++++++++++++++++++++++++++++++++++++
man/adjacencymatrix.Rd |only
man/rsgcc-package.Rd | 6 +--
src |only
7 files changed, 112 insertions(+), 23 deletions(-)
Title: R tools for phoneticians and phonologists
Diff between phonR versions 0.3-0 dated 2012-09-10 and 0.3-1 dated 2012-09-22
Description: phonR is an R package for phoneticians and phonologists,
including functions for normalization and plotting of vowels.
Author: Daniel R. McCloy
Maintainer: Daniel R. McCloy
DESCRIPTION | 8 -
MD5 | 6 -
R/phonR.r | 251 +++++++++++++++++++++++++++---------------------------
man/plotVowels.Rd | 71 +++++++--------
4 files changed, 172 insertions(+), 164 deletions(-)
Title: R tools for integrating phylogenies and ecology
Diff between picante versions 1.4-1 dated 2012-09-04 and 1.4-2 dated 2012-09-22
Description: Phylocom integration, community analyses, null-models,
traits and evolution in R
Author: Steven W. Kembel
Maintainer: Steven W. Kembel
picante-1.4-1/picante/R/pic.circular.R |only
picante-1.4-1/picante/man/pic.circular.Rd |only
picante-1.4-2/picante/DESCRIPTION | 8 ++++----
picante-1.4-2/picante/MD5 | 10 ++++------
picante-1.4-2/picante/R/pic3.R | 3 ++-
picante-1.4-2/picante/inst/doc/picante-intro.pdf |binary
picante-1.4-2/picante/man/picante-package.Rd | 4 ++--
7 files changed, 12 insertions(+), 13 deletions(-)
More information about NonpModelCheck at CRAN
Permanent link
Title: Design and analysis of mixture experiments
Diff between mixexp versions 0.5-1 dated 2011-08-30 and 1.0-5 dated 2012-09-22
Description: This package contains functions for creating designs for
mixture experiments, making ternary contour plots, and making
mixture effect plots.
Author: John Lawson
Maintainer: John Lawson
DESCRIPTION | 9 +-
MD5 | 33 +++++-----
R/MixturePlot.R | 170 ++++++++++++++++++++++++++++++++++++++++------------
TestDocument.txt |only
data/conmx.rda |binary
man/DesignPoints.Rd | 2
man/Effplot.Rd | 2
man/Eflags.Rd | 2
man/Fillv.Rd | 2
man/MixturePlot.Rd | 35 ++++++++--
man/Nrows.Rd | 2
man/SCD.Rd | 2
man/SLD.Rd | 2
man/Vertcen.Rd | 2
man/Xvert.Rd | 2
man/conmx.Rd | 2
man/crvtave.Rd | 2
src/cnvrt.f | 20 +++---
18 files changed, 203 insertions(+), 86 deletions(-)
Title: Linear time series analysis
Diff between ltsa versions 1.4 dated 2010-11-30 and 1.4.2 dated 2012-09-22
Description: Methods of developing linear time series modelling.
Methods are given for loglikelihood computation, forecasting
and simulation.
Author: A.I. McLeod, Hao Yu, Zinovi Krougly
Maintainer: A.I. McLeod
DESCRIPTION | 9 ++++-----
MD5 |only
NEWS | 4 ++++
R/DHSimulate.R | 2 +-
inst/doc/v23i05.pdf |binary
man/ltsa-package.Rd | 4 ++--
6 files changed, 11 insertions(+), 8 deletions(-)
Title: Optimal deseasonalization for geophysical time series using AR
fitting
Diff between deseasonalize versions 1.03 dated 2012-04-10 and 1.3.2 dated 2012-09-22
Description: Deseasonalize daily or monthly time series.
Author: A. I. McLeod and Hyukjun Gweon
Maintainer:
deseasonalize-1.03/deseasonalize/data/LondonMaxTemp.rda |only
deseasonalize-1.03/deseasonalize/inst/doc/LondonMaxTemp.R |only
deseasonalize-1.03/deseasonalize/inst/doc/ManleyTemp.R |only
deseasonalize-1.03/deseasonalize/inst/doc/Saugeen.R |only
deseasonalize-1.03/deseasonalize/man/LondonMaxTemp.Rd |only
deseasonalize-1.3.2/deseasonalize/.Rinstignore |only
deseasonalize-1.3.2/deseasonalize/DESCRIPTION | 10 ++--
deseasonalize-1.3.2/deseasonalize/MD5 | 25 ++++------
deseasonalize-1.3.2/deseasonalize/NAMESPACE | 1
deseasonalize-1.3.2/deseasonalize/R/ds.R | 8 +--
deseasonalize-1.3.2/deseasonalize/R/getds.R | 4 -
deseasonalize-1.3.2/deseasonalize/R/summary.deseasonalize.r | 2
deseasonalize-1.3.2/deseasonalize/data/SaugeenDay.rda |only
deseasonalize-1.3.2/deseasonalize/inst/CITATION | 11 ++--
deseasonalize-1.3.2/deseasonalize/inst/doc/DynamicVisualizationDailySaugeen.cdf |only
deseasonalize-1.3.2/deseasonalize/inst/doc/DynamicVisualizationDailySaugeen.nb |only
deseasonalize-1.3.2/deseasonalize/man/Saugeen.Rd | 1
deseasonalize-1.3.2/deseasonalize/man/SaugeenDay.Rd |only
deseasonalize-1.3.2/deseasonalize/man/deseasonalize-package.Rd | 17 ++++--
19 files changed, 42 insertions(+), 37 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-02 1.0-5
2012-03-16 1.0-4
2012-01-12 1.0-3
2011-04-25 1.0-2
2011-04-24 1.0-1