Title: Interface for hyperspectral data, i.e. spectra + meta info
(spatial, time, concentration, ...)
Diff between hyperSpec versions 0.98-20120713 dated 2012-07-14 and 0.98-20120923 dated 2012-09-23
Description: This package is an interface to handle hyperspectral data
sets in R. I.e. spatially or time-resolved spectra, or spectra
with any other kind of information associated with each of the
spectra. The spectra can be data as obtained in XRF, UV/VIS,
Fluorescence, AES, NIR, IR, Raman, NMR, MS, etc. More
generally, any data that is recorded over a discretized
variable, e.g. absorbance = f (wavelength), stored as a vector
of absorbance values for discrete wavelengths is suitable.
Author: Claudia Beleites
Maintainer: Claudia Beleites
DESCRIPTION | 21 +-
MD5 | 78 +++++-----
NAMESPACE | 7
R/as.data.frame.R | 47 +++---
R/hyperspec-package.R | 11 -
R/mvtnorm.R |only
R/normalize01.R |only
R/options.R | 16 +-
R/pearson.dist.R | 4
R/qplot.R | 6
R/qplotmixmap.R | 4
R/read.txt.Shimadzu.R | 346 +++++++++++++++++++++++----------------------
R/show.R | 60 ++++---
R/unittest.R | 15 +
R/vandermonde.R | 85 -----------
R/wleval.R |only
data/barbiturates.rda |binary
data/flu.rda |binary
data/paracetamol.rda |binary
inst/NEWS.Rd | 3
inst/doc/baseline.pdf |binary
inst/doc/fileio.pdf |binary
inst/doc/flu.pdf |binary
inst/doc/introduction.Rnw | 74 ++++++++-
inst/doc/introduction.pdf |binary
inst/doc/laser.pdf |binary
inst/doc/plotting.pdf |binary
inst/doc/vignettes.defs | 10 +
man/asdataframe.Rd | 27 +--
man/hyperSpec-package.Rd | 2
man/normalize01.Rd | 14 +
man/options.Rd | 12 -
man/pearson.dist.Rd | 1
man/read.txt.Shimadzu.Rd | 8 -
man/rmmvnorm.Rd |only
man/vanderMonde.Rd | 14 -
tests/unittests.Rout |only
vignettes/Makefile | 8 -
vignettes/Rplots.pdf |only
vignettes/introduction.Rnw | 74 ++++++++-
vignettes/laser-pkg.bib | 40 ++++-
vignettes/plotting-pkg.bib | 12 -
vignettes/vignettes.defs | 10 +
43 files changed, 578 insertions(+), 431 deletions(-)
Title: Shape constrained additive models
Diff between scam versions 1.1-2 dated 2012-08-05 and 1.1-3 dated 2012-09-23
Description: Routines for generalized additive modelling under shape
constraints on the component functions of the linear predictor.
Models can contain multiple shape constrained (univariate
and/or bivariate) and unconstrained terms. The routines of
mgcv(gam) package are used for setting up the model matrix,
printing and plotting the results. Penalized likelihood
maximization based on Newton-Raphson method is used to fit a
model with multiple smoothing parameter selection by GCV or
UBRE/AIC.
Author: Natalya Pya
Maintainer: Natalya Pya
DESCRIPTION | 8 +--
MD5 | 20 ++++----
R/bfgs.R | 11 +---
R/derivative.smooth.R | 2
R/estimate.scam.R | 23 +++++----
R/extrapolate.uni.scam.R | 7 +-
R/print.scam.R | 5 +-
R/scam.R | 110 ++++++++++++++++++++---------------------------
man/bfgs_gcv.ubre.Rd | 1
man/scam-package.Rd | 6 +-
man/scam.Rd | 2
11 files changed, 93 insertions(+), 102 deletions(-)
Title: Exact P-values and Matching Confidence Intervals for simple
Discrete Parametric Cases
Diff between exactci versions 1.1-0.1 dated 2010-07-30 and 1.2-0 dated 2012-09-23
Description: Calculates exact tests and confidence intervals for
one-sample binomial and one- or two-sample Poisson cases.
Author: M.P. Fay
Maintainer: M.P. Fay
exactci-1.1-0.1/exactci/inst/doc/Sweave.sty |only
exactci-1.1-0.1/exactci/inst/doc/TwoSidedExact.pdf |only
exactci-1.2-0/exactci/ChangeLog | 5 +++++
exactci-1.2-0/exactci/DESCRIPTION | 8 ++++----
exactci-1.2-0/exactci/MD5 |only
exactci-1.2-0/exactci/R/exactpoissonCI.R | 7 +++++--
exactci-1.2-0/exactci/R/exactpoissonPvals.R | 5 ++++-
exactci-1.2-0/exactci/R/poisson.exact.R | 9 +++++++++
exactci-1.2-0/exactci/inst/doc/exactci.Rnw | 4 ++--
exactci-1.2-0/exactci/inst/doc/exactci.pdf |binary
10 files changed, 29 insertions(+), 9 deletions(-)
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Diff between gmm versions 1.4-2 dated 2012-06-19 and 1.4-3 dated 2012-09-23
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
Author: Pierre Chausse
Maintainer: Pierre Chausse
DESCRIPTION | 13 +++--
MD5 | 20 ++++----
NEWS | 7 +++
R/FinRes.R | 33 ++++++++++++++
R/getModel.R | 4 +
R/gmm.R | 10 ++--
R/momentEstim.R | 112 +++++++++++++++++++++++++++++++++++-------------
inst/doc/empir.bib | 7 +++
inst/doc/gmm_with_R.pdf |binary
inst/doc/gmm_with_R.rnw | 8 +--
man/gmm.Rd | 33 +++++++++-----
11 files changed, 180 insertions(+), 67 deletions(-)
Title: Acoustic Traveltime Calculations for 1-D Atmospheric Models
Diff between AtmRay versions 1.0 dated 2012-07-31 and 1.1 dated 2012-09-23
Description: Calculates acoustic traveltimes and ray paths in 1-D,
linear atmospheres. Later versions will support arbitrary 1-D
atmospheric models, such as radiosonde measurements and
standard reference atmospheres.
Author: Jake Anderson
Maintainer: Jake Anderson
DESCRIPTION | 6 +--
MD5 | 8 ++--
R/MakeAtmList.lin.R | 2 -
man/MakeArrivals.lin.Rd | 3 -
src/AtmRay.c | 87 +++++++++++++++++++++++++++++++++++++++++-------
5 files changed, 85 insertions(+), 21 deletions(-)
Title: Automatic Text Classification via Supervised Learning
Diff between RTextTools versions 1.3.9 dated 2012-08-15 and 1.4.0 dated 2012-09-23
Description: RTextTools is a machine learning package for automatic
text classification that makes it simple for novice users to
get started with machine learning, while allowing experienced
users to easily experiment with different settings and
algorithm combinations. The package includes nine algorithms
for ensemble classification (svm, slda, boosting, bagging,
random forests, glmnet, decision trees, neural networks,
maximum entropy), comprehensive analytics, and thorough
documentation.
Author: Timothy P. Jurka, Loren Collingwood, Amber E. Boydstun,
Emiliano Grossman, Wouter van Atteveldt
Maintainer: Timothy P. Jurka
RTextTools-1.3.9/RTextTools/ChangeLog |only
RTextTools-1.3.9/RTextTools/inst/examples/simple_demo.R |only
RTextTools-1.4.0/RTextTools/CHANGELOG |only
RTextTools-1.4.0/RTextTools/DESCRIPTION | 10 +--
RTextTools-1.4.0/RTextTools/MD5 | 26 ++++----
RTextTools-1.4.0/RTextTools/R/cross_validate.R | 6 +-
RTextTools-1.4.0/RTextTools/R/train_model.R | 3 -
RTextTools-1.4.0/RTextTools/data/NYTimes.csv.gz |binary
RTextTools-1.4.0/RTextTools/data/USCongress.csv.gz |binary
RTextTools-1.4.0/RTextTools/demo/00Index | 1
RTextTools-1.4.0/RTextTools/demo/CrossValidation.R |only
RTextTools-1.4.0/RTextTools/demo/RTextTools.R | 11 ---
RTextTools-1.4.0/RTextTools/inst/examples/conference_demo.R | 24 ++------
RTextTools-1.4.0/RTextTools/inst/examples/normal_demo.R | 32 +++++------
RTextTools-1.4.0/RTextTools/inst/examples/saved_model_demo.R | 28 ++++-----
RTextTools-1.4.0/RTextTools/man/cross_validate.Rd | 2
16 files changed, 62 insertions(+), 81 deletions(-)
Title: Tuning Insensitive Graph Estimation and Regression
Diff between bigmatrix versions 0.9.4 dated 2012-08-22 and 0.9.5 dated 2012-09-23
Description: The package "bigmatrix" estimates high dimensional
precision matrices for Gaussian graphical models. We adopt two
estimation procedures based column by column regression: (1)
Tuning-Insensitive Graph Estimation and Regression (TIGER). (2)
The Constrained L1 Minimization for Sparse Precision Matrix
Estimation (CLIME). (3) Adaptive Lasso for Sparse Precision
Matrix Estimation (ADP). The optimization algorithm for CLIME
and ADP are based on alternative direction method combined with
coordinate decent. The computation is memory-optimized using
the sparse matrix output.
Author: Xingguo Li, Tuo Zhao, Lie Wang and Han Liu
Maintainer: Xingguo Li
DESCRIPTION | 30 ++++-----
MD5 | 30 +++++----
NAMESPACE | 2
R/tiger.R | 59 +++++++++++++-----
R/tiger.adp.cdadm.R |only
R/tiger.clime.cdadm.R | 3
R/tiger.clime.hadm.R |only
R/tiger.clime.ladm.R | 3
R/tiger.generator.R | 151 ++++-------------------------------------------
man/bigmatrix-package.Rd | 16 ++--
man/tiger-internal.Rd | 13 ++--
man/tiger.Rd | 57 +++++++++--------
man/tiger.generator.Rd | 32 ++-------
man/tiger.select.Rd | 11 +--
src/tiger_adp_cdadm.c |only
src/tiger_clime_cdadm.c | 3
src/tiger_clime_hadm.c |only
src/tiger_clime_ladm.c | 1
18 files changed, 158 insertions(+), 253 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-03 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-04 1.0