Title: A Laboratory for Recursive Partytioning
Diff between party versions 1.0-2 dated 2012-04-26 and 1.0-3 dated 2012-09-26
Description: A computational toolbox for recursive partitioning. The
core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems,
including nominal, ordinal, numeric, censored as well as
multivariate response variables and arbitrary measurement
scales of the covariates. Based on conditional inference
trees, cforest() provides an implementation of Breiman's random
forests. The function mob() implements an algorithm for
recursive partitioning based on parametric models (e.g. linear
models, GLMs or survival regression) employing parameter
instability tests for split selection. Extensible functionality
for visualizing tree-structured regression models is available.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Carolin Strobl
[aut], Achim Zeileis [aut]
Maintainer: Torsten Hothorn
DESCRIPTION | 8 +-
MD5 | 68 +++++++++++------------
R/MOB-Utils.R | 48 ++++++++++------
R/RandomForest.R | 39 +++++++++----
R/Utils.R | 19 ++++++
R/varimp.R | 88 +++++++++++++++++++++++++++++++
data/mammoexp.rda |binary
inst/NEWS | 8 ++
inst/doc/MOB.Rnw | 35 +++++++-----
inst/doc/MOB.pdf |binary
inst/doc/party.pdf |binary
man/cforest.Rd | 4 +
man/varimp.Rd | 13 ++++
src/Predict.c | 4 -
src/RandomForest.c | 84 +++++++++++++++++++++++++++++
tests/Distributions.R | 16 ++---
tests/Distributions.Rout.save | 24 ++++----
tests/Examples/party-Ex.Rout.save | 9 +--
tests/IndependenceTest-regtest.R | 4 -
tests/IndependenceTest-regtest.Rout.save | 12 ++--
tests/LinearStatistic-regtest.Rout.save | 8 +-
tests/Node-regtest.R | 4 -
tests/Node-regtest.Rout.save | 12 ++--
tests/Predict-regtest.Rout.save | 8 +-
tests/RandomForest-regtest.R | 7 ++
tests/RandomForest-regtest.Rout.save | 18 +++++-
tests/Splits-regtest.Rout.save | 8 +-
tests/TestStatistic-regtest.Rout.save | 8 +-
tests/TreeGrow-regtest.Rout.save | 8 +-
tests/Utils-regtest.R | 6 +-
tests/Utils-regtest.Rout.save | 14 ++--
tests/bugfixes.Rout.save | 4 -
tests/mob.Rout.save | 4 -
vignettes/MOB.Rnw | 35 +++++++-----
vignettes/partyrefs.bib | 48 ++++++++--------
35 files changed, 483 insertions(+), 192 deletions(-)
Title: Multivariate Marginal Models
Diff between mmm versions 1.0 dated 2012-08-22 and 1.1 dated 2012-09-26
Description: fits multivariate marginal models for multivariate
longitudinal data for both continuous and discrete responses
Author: Ozgur Asar, Ozlem Ilk
Maintainer: Ozgur Asar
mmm-1.0/mmm/data/mscm.mmm.rda |only
mmm-1.0/mmm/man/mscm.mmm.Rd |only
mmm-1.1/mmm/DESCRIPTION | 15 ++--
mmm-1.1/mmm/MD5 | 18 +++--
mmm-1.1/mmm/NAMESPACE | 1
mmm-1.1/mmm/R/mmm.R | 127 +++++++++++++++++------------------------
mmm-1.1/mmm/data/mlcd.rda |only
mmm-1.1/mmm/data/mlgd.rda |only
mmm-1.1/mmm/data/mscm.rda |only
mmm-1.1/mmm/man/mlcd.Rd |only
mmm-1.1/mmm/man/mlgd.Rd |only
mmm-1.1/mmm/man/mmm-package.Rd | 8 +-
mmm-1.1/mmm/man/mmm.Rd | 97 +++++++++++++++++--------------
mmm-1.1/mmm/man/mscm.Rd |only
14 files changed, 132 insertions(+), 134 deletions(-)
More information about CopulaRegression at CRAN
Permanent link
Title: Estimation of R0 and real-time reproduction number from
epidemics
Diff between R0 versions 1.1-2 dated 2012-08-10 and 1.1-3 dated 2012-09-26
Description: This package is designed to estimate reproduction numbers
for disease outbreak, based on incidence data. It implements
several documented methods. It is therefore possible to compare
estimations according to the methods used. Depending on the
methods requested by user, basic reproduction number (commonly
denoted as R0) or real-time reproduction number (referred to as
R(t)) is computed, along with a 95% Confidence Interval.
Plotting outputs will give different graphs depending on the
methods requested : basic reproductive number estimations will
only show the epidemic curve (collected data) and an adjusted
model, whereas real-time methods will also show the R(t)
variations throughout the outbreak time period. Sensitivity
analysis tools are also provided, and allow for investigating
effects of varying Generation Time distribution or time window
on estimates.
Author: Pierre-Yves Boelle, Thomas Obadia
Maintainer: Thomas Obadia
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/est.R0.TD.R | 20 ++++++++++++--------
3 files changed, 18 insertions(+), 14 deletions(-)
Title: Barnard's Unconditional Test
Diff between Barnard versions 1.2 dated 2011-11-21 and 1.3 dated 2012-09-26
Description: Barnard's unconditional test for 2x2 contingency tables.
Author: Kamil Erguler
Maintainer: Kamil Erguler
DESCRIPTION | 8 ++---
MD5 | 10 +++---
R/barnardw.test.R | 73 +++++++++++++++++++++++++++++++++++++++------------
man/Barnard.Rd | 7 ++--
man/barnardw.test.Rd | 11 +++++--
src/Barnard.c | 50 +++++++++++++---------------------
6 files changed, 97 insertions(+), 62 deletions(-)
Title: Rmetrics - Chronological and Calendar Objects
Diff between timeDate versions 2160.96 dated 2012-09-24 and 2160.97 dated 2012-09-26
Description: Environment for teaching "Financial Engineering and
Computational Finance"
Author: Diethelm Wuertz, Yohan Chalabi and Martin Maechler with
contributions from Joe W. Byers, and others
Maintainer: Yohan Chalabi
ChangeLog | 8 ++
DESCRIPTION | 12 +--
MD5 | 10 +-
NAMESPACE | 2
R/calendar-endpoints.R | 156 +++++++++++++++++++++++-----------------------
man/calendar-endpoints.Rd | 29 ++++----
6 files changed, 112 insertions(+), 105 deletions(-)
Title: Graphs for spatial point patterns
Diff between spatgraphs versions 2.60 dated 2012-04-08 and 2.62 dated 2012-09-26
Description: Graphs, graph visualization and graph component
calculations, ment to be used as a tool in spatial point
pattern analysis. See package 'spatstat' for more info about
spatial point patterns.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala
spatgraphs-2.60/spatgraphs/.Rbuildindex.12151 |only
spatgraphs-2.60/spatgraphs/.cproject |only
spatgraphs-2.60/spatgraphs/.project |only
spatgraphs-2.62/spatgraphs/DESCRIPTION | 8 +-
spatgraphs-2.62/spatgraphs/MD5 | 24 +++---
spatgraphs-2.62/spatgraphs/ToAdd.TXT0 | 51 --------------
spatgraphs-2.62/spatgraphs/change.log | 2
spatgraphs-2.62/spatgraphs/man/spatgraphs-other.Rd | 13 +--
spatgraphs-2.62/spatgraphs/man/spatgraphs-package.Rd | 40 +++++------
spatgraphs-2.62/spatgraphs/man/spatgraphs-print.sg.Rd | 7 --
spatgraphs-2.62/spatgraphs/man/spatgraphs-runif3d.Rd | 4 -
spatgraphs-2.62/spatgraphs/man/spatgraphs-sg.Rd | 14 ++--
spatgraphs-2.62/spatgraphs/man/spatgraphs-sgc.Rd | 12 ++-
spatgraphs-2.62/spatgraphs/man/spatgraphs-spatcluster.Rd | 5 +
spatgraphs-2.62/spatgraphs/man/spatgraphs-spatgraph.Rd | 52 +++++++--------
spatgraphs-2.62/spatgraphs/man/spatgraphs-spectral.Rd | 8 +-
16 files changed, 98 insertions(+), 142 deletions(-)
Title: Fitting distributions to given data or known quantiles
Diff between rriskDistributions versions 1.7 dated 2012-06-06 and 1.8 dated 2012-09-26
More information about rriskDistributions at CRAN
Description: Collection of functions for fitting distributions to given
data or by known quantiles. Two main functions fit.perc() and
fit.cont() provide users a GUI that allows to choose a most
appropriate distribution without any knowledge of the R syntax.
Note, this package is a part of the 'rrisk' project.
Author: Natalia Belgorodski (STAT-UP Statistical Consulting, Germany),
Matthias Greiner (Federal Institute for Risk Assessment,
Germany), Kristin Tolksdorf (Federal Institute for Risk
Assessment, Germany), Katharina Schueller (STAT-UP Statistical
Consulting, Germany)
Maintainer: Federal Institute for Risk Assessment, Matthias Greiner
rriskDistributions-1.7/rriskDistributions/R/rriskDistributions_functions_v1.7.R |only
rriskDistributions-1.8/rriskDistributions/DESCRIPTION | 14 +-
rriskDistributions-1.8/rriskDistributions/MD5 | 63 +++++-----
rriskDistributions-1.8/rriskDistributions/NEWS |only
rriskDistributions-1.8/rriskDistributions/R/rriskDistributions_functions_v1.8new.R |only
rriskDistributions-1.8/rriskDistributions/man/fit.cont.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/fit.perc.Rd | 12 +
rriskDistributions-1.8/rriskDistributions/man/get.beta.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.cauchy.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.chisq.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.chisqnc.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.exp.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.f.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.gamma.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.gompertz.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.hyper.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.lnorm.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.logis.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.nbinom.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.norm.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.norm.sd.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.pert.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.pois.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.t.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.tnorm.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.triang.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.unif.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/get.weibull.par.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/plotDiagnostics.perc.Rd | 10 +
rriskDistributions-1.8/rriskDistributions/man/rriskFitdist.cont.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/rriskFitdist.perc.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/rriskMLEdist.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/rriskMMEdist.Rd | 7 +
rriskDistributions-1.8/rriskDistributions/man/useFitdist.Rd | 7 +
34 files changed, 249 insertions(+), 39 deletions(-)
Permanent link
Title: Predefined Bayes models fitted with Markov chain Monte Carlo
(MCMC) (related to the 'rrisk' project)
Diff between rriskBayes versions 2.2 dated 2012-07-26 and 2.3 dated 2012-09-26
Description: Collection of functions for fitting Bayesian models. The
functions can be used as stand-alone application or launched
during an 'rrisk' session.
Author: Natalia Belgorodski (STAT-UP Statistical Consulting, Germany),
Matthias Greiner (Federal Institute for Risk Assessment,
Germany), Alexander Engelhardt (STAT-UP Statistical Consulting,
Germany)
Maintainer: Federal Institute for Risk Assessment, Matthias Greiner
rriskBayes-2.2/rriskBayes/R/rriskBayes_functions_v2.2.R |only
rriskBayes-2.3/rriskBayes/DESCRIPTION | 10 +++----
rriskBayes-2.3/rriskBayes/MD5 | 17 ++++++-------
rriskBayes-2.3/rriskBayes/NEWS |only
rriskBayes-2.3/rriskBayes/R/rriskBayes_functions_v2.3new.R |only
rriskBayes-2.3/rriskBayes/man/PEMGUI.Rd | 9 ++++++
rriskBayes-2.3/rriskBayes/man/ZIPGUI.Rd | 6 ++--
rriskBayes-2.3/rriskBayes/man/diagnostics.Rd | 2 -
rriskBayes-2.3/rriskBayes/man/rrisk.BayesPEM.Rd | 2 -
rriskBayes-2.3/rriskBayes/man/rrisk.BayesZIP.Rd | 6 ++--
rriskBayes-2.3/rriskBayes/man/rrisk.samplesBgr.Rd | 2 -
11 files changed, 31 insertions(+), 23 deletions(-)
Title: RAppArmor
Diff between RAppArmor versions 0.5.0 dated 2012-07-28 and 0.6.0 dated 2012-09-26
Description: R interfaces to Linux and AppArmor security stuff.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
RAppArmor-0.5.0/RAppArmor/man/getpriority.Rd |only
RAppArmor-0.5.0/RAppArmor/paper/RAppArmor-manual.pdf |only
RAppArmor-0.5.0/RAppArmor/paper/document.synctex.gz |only
RAppArmor-0.5.0/RAppArmor/paper/tmp |only
RAppArmor-0.6.0/RAppArmor/CHANGES |only
RAppArmor-0.6.0/RAppArmor/DESCRIPTION | 10
RAppArmor-0.6.0/RAppArmor/Debian-Wheezy.txt | 12
RAppArmor-0.6.0/RAppArmor/MD5 | 125
RAppArmor-0.6.0/RAppArmor/NAMESPACE | 2
RAppArmor-0.6.0/RAppArmor/OpenSuse.txt |only
RAppArmor-0.6.0/RAppArmor/R/aa_change_hat.R | 11
RAppArmor-0.6.0/RAppArmor/R/aa_change_profile.R | 6
RAppArmor-0.6.0/RAppArmor/R/aa_find_mountpoint.R | 6
RAppArmor-0.6.0/RAppArmor/R/aa_getcon.R | 6
RAppArmor-0.6.0/RAppArmor/R/aa_is_enabled.R | 7
RAppArmor-0.6.0/RAppArmor/R/eval.secure.R | 55
RAppArmor-0.6.0/RAppArmor/R/kill.R |only
RAppArmor-0.6.0/RAppArmor/R/rlimits.R | 79
RAppArmor-0.6.0/RAppArmor/R/setgid.R | 6
RAppArmor-0.6.0/RAppArmor/R/setpgid.R |only
RAppArmor-0.6.0/RAppArmor/R/setpriority.R | 31
RAppArmor-0.6.0/RAppArmor/R/setuid.R | 6
RAppArmor-0.6.0/RAppArmor/debian/changelog | 2
RAppArmor-0.6.0/RAppArmor/debian/control | 4
RAppArmor-0.6.0/RAppArmor/examples/proof-of-concept.R | 3
RAppArmor-0.6.0/RAppArmor/man/aa_change_hat.Rd | 4
RAppArmor-0.6.0/RAppArmor/man/aa_change_profile.Rd | 4
RAppArmor-0.6.0/RAppArmor/man/aa_find_mountpoint.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/aa_getcon.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/aa_is_enabled.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/eval.secure.Rd | 13
RAppArmor-0.6.0/RAppArmor/man/kill.Rd |only
RAppArmor-0.6.0/RAppArmor/man/rlimit_as.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_core.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_cpu.Rd | 9
RAppArmor-0.6.0/RAppArmor/man/rlimit_data.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_fsize.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_memlock.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_msgqueue.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_nice.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_nofile.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_nproc.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_rtprio.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_rttime.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_sigpending.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/rlimit_stack.Rd | 5
RAppArmor-0.6.0/RAppArmor/man/setgid.Rd | 4
RAppArmor-0.6.0/RAppArmor/man/setpriority.Rd | 11
RAppArmor-0.6.0/RAppArmor/man/setuid.Rd | 4
RAppArmor-0.6.0/RAppArmor/paper/code.R |only
RAppArmor-0.6.0/RAppArmor/paper/document.bib | 266
RAppArmor-0.6.0/RAppArmor/paper/document.pdf | 6015 +++++++------
RAppArmor-0.6.0/RAppArmor/paper/document.tex | 1277 +-
RAppArmor-0.6.0/RAppArmor/paper/jss.bst | 16
RAppArmor-0.6.0/RAppArmor/paper/jss.cls | 41
RAppArmor-0.6.0/RAppArmor/src/aa_change_hat_wrapper.c | 7
RAppArmor-0.6.0/RAppArmor/src/aa_change_profile_wrapper.c | 7
RAppArmor-0.6.0/RAppArmor/src/aa_find_mountpoint_wrapper.c | 7
RAppArmor-0.6.0/RAppArmor/src/aa_getcon_wrapper.c | 7
RAppArmor-0.6.0/RAppArmor/src/aa_is_enabled_wrapper.c | 7
RAppArmor-0.6.0/RAppArmor/src/aa_revert_hat_wrapper.c | 7
RAppArmor-0.6.0/RAppArmor/src/getpgid_wrapper.c |only
RAppArmor-0.6.0/RAppArmor/src/kill_wrapper.c |only
RAppArmor-0.6.0/RAppArmor/src/rlimits.c | 170
RAppArmor-0.6.0/RAppArmor/src/setgid_wrapper.c | 7
RAppArmor-0.6.0/RAppArmor/src/setpgid_wrapper.c |only
RAppArmor-0.6.0/RAppArmor/src/setpriority_wrapper.c | 7
RAppArmor-0.6.0/RAppArmor/src/setuid_wrapper.c | 7
68 files changed, 4660 insertions(+), 3688 deletions(-)
Title: Simple interface to the estimation and plotting of IRT models
Diff between irtoys versions 0.1.5 dated 2012-07-01 and 0.1.6 dated 2012-09-26
Description: Provides a simple common interface to the estimation of
item parameters in IRT models for binary responses with three
different programs (ICL, BILOG-MG, and ltm, and a variety of
functions useful with IRT models.
Author: Ivailo Partchev
Maintainer: Ivailo Partchev
irtoys-0.1.5/irtoys/man/grp.Rd |only
irtoys-0.1.5/irtoys/man/l2m.Rd |only
irtoys-0.1.6/irtoys/DESCRIPTION | 8 +-
irtoys-0.1.6/irtoys/MD5 | 88 +++++++++++-----------
irtoys-0.1.6/irtoys/NAMESPACE | 2
irtoys-0.1.6/irtoys/R/ability.R | 8 +-
irtoys-0.1.6/irtoys/R/estimate.R | 50 +++++++-----
irtoys-0.1.6/irtoys/R/irtoys-package.R | 13 ++-
irtoys-0.1.6/irtoys/R/itemfit.R | 117 ++++++++++--------------------
irtoys-0.1.6/irtoys/R/nonpar.R | 2
irtoys-0.1.6/irtoys/R/readin.R | 13 ++-
irtoys-0.1.6/irtoys/R/scale.R | 6 -
irtoys-0.1.6/irtoys/R/tracelines.R | 33 ++++----
irtoys-0.1.6/irtoys/R/utils.R | 27 ------
irtoys-0.1.6/irtoys/man/Scored.Rd | 1
irtoys-0.1.6/irtoys/man/Unscored.Rd | 1
irtoys-0.1.6/irtoys/man/api.Rd | 11 ++
irtoys-0.1.6/irtoys/man/dpv.Rd | 7 +
irtoys-0.1.6/irtoys/man/eap.Rd | 7 +
irtoys-0.1.6/irtoys/man/est.Rd | 45 ++++++-----
irtoys-0.1.6/irtoys/man/iif.Rd | 7 +
irtoys-0.1.6/irtoys/man/irf.Rd | 12 +--
irtoys-0.1.6/irtoys/man/irtoys-package.Rd | 15 +++
irtoys-0.1.6/irtoys/man/itf.Rd | 70 +++++++++--------
irtoys-0.1.6/irtoys/man/mlebme.Rd | 7 +
irtoys-0.1.6/irtoys/man/normal.qu.Rd | 6 +
irtoys-0.1.6/irtoys/man/npp.Rd | 14 ++-
irtoys-0.1.6/irtoys/man/plot.iif.Rd | 12 +--
irtoys-0.1.6/irtoys/man/plot.irf.Rd | 10 +-
irtoys-0.1.6/irtoys/man/plot.tif.Rd | 8 +-
irtoys-0.1.6/irtoys/man/plot.trf.Rd | 8 +-
irtoys-0.1.6/irtoys/man/qrs.Rd | 3
irtoys-0.1.6/irtoys/man/read.ip.bilog.Rd | 17 ++--
irtoys-0.1.6/irtoys/man/read.ip.icl.Rd | 15 ++-
irtoys-0.1.6/irtoys/man/read.qu.icl.Rd | 3
irtoys-0.1.6/irtoys/man/read.resp.Rd | 5 -
irtoys-0.1.6/irtoys/man/sca.Rd | 31 ++++---
irtoys-0.1.6/irtoys/man/sco.Rd | 5 -
irtoys-0.1.6/irtoys/man/scp.Rd | 7 +
irtoys-0.1.6/irtoys/man/sim.Rd | 7 +
irtoys-0.1.6/irtoys/man/tgp.Rd | 9 +-
irtoys-0.1.6/irtoys/man/tia.Rd | 6 -
irtoys-0.1.6/irtoys/man/tif.Rd | 7 +
irtoys-0.1.6/irtoys/man/trf.Rd | 7 +
irtoys-0.1.6/irtoys/man/tsc.Rd | 11 +-
irtoys-0.1.6/irtoys/man/wle.Rd | 7 +
46 files changed, 389 insertions(+), 359 deletions(-)
Title: Direct labels for multicolor plots in lattice or ggplot2
Diff between directlabels versions 2.6 dated 2012-06-09 and 2.9 dated 2012-09-26
Description: The directlabels package provides an extensible framework
for automatically placing direct labels onto multicolor lattice
or ggplot2 plots. It includes heuristics for examining
"trellis" and "ggplot" objects and inferring an appropriate
Positioning Method for placing the labels. Furthermore, the
design of directlabels makes it simple to create Positioning
Methods for specific plots or libraries of portable Positioning
Methods that can be re-used.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking
directlabels-2.6/directlabels/etc/.Rhistory |only
directlabels-2.9/directlabels/DESCRIPTION | 6
directlabels-2.9/directlabels/MD5 | 48 -
directlabels-2.9/directlabels/NEWS | 60 +
directlabels-2.9/directlabels/R/compare.R | 94 --
directlabels-2.9/directlabels/R/doc.R | 9
directlabels-2.9/directlabels/R/dotplot.R | 5
directlabels-2.9/directlabels/R/lineplot.R | 16
directlabels-2.9/directlabels/R/positioning.functions.R | 190 -----
directlabels-2.9/directlabels/R/utility.function.R | 367 ++++++++--
directlabels-2.9/directlabels/data/SegCost.RData |only
directlabels-2.9/directlabels/etc/area.R |only
directlabels-2.9/directlabels/etc/fp.fn.R |only
directlabels-2.9/directlabels/etc/gabor.R |only
directlabels-2.9/directlabels/etc/grid-text |only
directlabels-2.9/directlabels/etc/tikz-text-bounding-box-bug.R |only
directlabels-2.9/directlabels/etc/tikz-text-bounding-box-simple.R |only
directlabels-2.9/directlabels/man/SegCost.Rd |only
directlabels-2.9/directlabels/man/direct.label.Rd | 192 -----
directlabels-2.9/directlabels/man/directlabels-package.Rd | 2
directlabels-2.9/directlabels/man/dl.combine.Rd | 206 ++---
directlabels-2.9/directlabels/man/dl.move.Rd | 2
directlabels-2.9/directlabels/man/dlcompare.Rd | 94 --
directlabels-2.9/directlabels/man/make.tiebreaker.Rd |only
directlabels-2.9/directlabels/man/positioning.functions.Rd | 2
directlabels-2.9/directlabels/man/qp.labels.Rd | 99 ++
directlabels-2.9/directlabels/man/reduce.cex.lr.Rd |only
directlabels-2.9/directlabels/man/vertical.qp.Rd | 2
directlabels-2.9/directlabels/man/xlimits.Rd |only
directlabels-2.9/directlabels/man/ylimits.Rd |only
directlabels-2.9/directlabels/tests/doc/lineplot/lars.R | 2
31 files changed, 678 insertions(+), 718 deletions(-)
Title: An R package for changepoint analysis
Diff between changepoint versions 0.7 dated 2012-05-22 and 0.8 dated 2012-09-26
Description: Implements various mainstream and specialised changepoint
methods for finding single and multiple changepoints within
data. Many popular non-parametric and frequentist methods are
included. The cpt.mean, cpt.var, cpt.meanvar functions should
be your first point of call.
Author: Rebecca Killick
Maintainer: Rebecca Killick
DESCRIPTION | 8
MD5 | 70 +++---
NEWS | 9
R/decision.R | 9
R/exp.R | 9
R/gamma.R | 9
R/multiple.nonparametric.R | 18 +
R/multiple.norm.R | 27 ++
R/poisson.R | 9
R/single.nonparametric.R | 9
data/Lai2005fig3.RData |only
data/Lai2005fig4.RData |only
data/ftse100.RData |binary
man/Lai2005fig3.Rd |only
man/Lai2005fig4.Rd |only
man/changepoint-package.Rd | 4
man/cpt.mean.Rd | 2
man/cpt.meanvar.Rd | 2
man/cpt.var.Rd | 2
man/decision.Rd | 2
man/ftse100.Rd | 6
man/multiple.mean.cusum.Rd | 2
man/multiple.mean.norm.Rd | 2
man/multiple.meanvar.exp.Rd | 2
man/multiple.meanvar.gamma.Rd | 2
man/multiple.meanvar.norm.Rd | 2
man/multiple.meanvar.poisson.Rd | 2
man/multiple.var.css.Rd | 2
man/multiple.var.norm.Rd | 2
man/single.mean.cusum.Rd | 2
man/single.mean.norm.Rd | 2
man/single.meanvar.exp.Rd | 2
man/single.meanvar.gamma.Rd | 2
man/single.meanvar.norm.Rd | 2
man/single.meanvar.poisson.Rd | 2
man/single.var.css.Rd | 2
man/single.var.norm.Rd | 2
src/PELT.c | 441 +++++++++++++++++++++++++++-------------
38 files changed, 467 insertions(+), 201 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Diff between arm versions 1.5-06 dated 2012-09-20 and 1.5-07 dated 2012-09-26
Description: R functions for processing lm, glm, mer and polr outputs.
Author: Andrew Gelman
Maintainer: Yu-Sung Su
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/balance.R | 38 +++++++++++++++++++++-----------------
R/coefplot.R | 1 +
5 files changed, 34 insertions(+), 25 deletions(-)
Title: Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Diff between xlsx versions 0.4.2 dated 2012-02-11 and 0.5.0 dated 2012-09-26
Description: Provide R functions to read/write/format Excel 2007 and
Excel 97/2000/XP/2003 file formats.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
xlsx-0.4.2/xlsx/inst/java/RInterface.jar |only
xlsx-0.4.2/xlsx/other/RInterface.java |only
xlsx-0.4.2/xlsx/other/TestRInterface.java |only
xlsx-0.4.2/xlsx/other/runUnitTests.R |only
xlsx-0.5.0/xlsx/DESCRIPTION | 8 -
xlsx-0.5.0/xlsx/MD5 | 89 +++++++-----
xlsx-0.5.0/xlsx/NEWS | 22 +++
xlsx-0.5.0/xlsx/R/Cell.R | 30 ----
xlsx-0.5.0/xlsx/R/CellBlock.R |only
xlsx-0.5.0/xlsx/R/CellStyle.R | 29 +++-
xlsx-0.5.0/xlsx/R/Font.R | 8 -
xlsx-0.5.0/xlsx/R/NamedRanges.R | 85 ------------
xlsx-0.5.0/xlsx/R/Workbook.R | 3
xlsx-0.5.0/xlsx/R/addDataFrame.R | 86 +++++-------
xlsx-0.5.0/xlsx/R/read.xlsx2.R | 18 +-
xlsx-0.5.0/xlsx/R/readColumns.R | 2
xlsx-0.5.0/xlsx/R/readRows.R | 16 +-
xlsx-0.5.0/xlsx/R/utilities.R | 28 +++
xlsx-0.5.0/xlsx/R/write.xlsx.R | 3
xlsx-0.5.0/xlsx/R/write.xlsx2.R | 3
xlsx-0.5.0/xlsx/WISHLIST | 4
xlsx-0.5.0/xlsx/inst/doc/xlsx.pdf |binary
xlsx-0.5.0/xlsx/inst/java/rexcel-0.5.0.jar |only
xlsx-0.5.0/xlsx/inst/tests/crash_write_xlsx.R | 33 ----
xlsx-0.5.0/xlsx/inst/tests/lib_tests_xlsx.R | 184 +++++++++++++++++++++-----
xlsx-0.5.0/xlsx/man/Border.Rd | 2
xlsx-0.5.0/xlsx/man/Cell.Rd | 18 --
xlsx-0.5.0/xlsx/man/CellBlock.Rd |only
xlsx-0.5.0/xlsx/man/Fill.Rd | 2
xlsx-0.5.0/xlsx/man/Font.Rd | 11 -
xlsx-0.5.0/xlsx/man/NamedRanges.Rd | 7
xlsx-0.5.0/xlsx/man/OtherEffects.Rd | 4
xlsx-0.5.0/xlsx/man/Workbook.Rd | 5
xlsx-0.5.0/xlsx/man/addDataFrame.Rd | 14 +
xlsx-0.5.0/xlsx/man/read.xlsx.Rd | 7
xlsx-0.5.0/xlsx/man/readColumns.Rd | 5
xlsx-0.5.0/xlsx/man/write.xlsx.Rd | 18 +-
xlsx-0.5.0/xlsx/man/xlsx-package.Rd | 4
xlsx-0.5.0/xlsx/other/make.package.R | 132 ++++++------------
xlsx-0.5.0/xlsx/other/pom.xml |only
xlsx-0.5.0/xlsx/other/src |only
xlsx-0.5.0/xlsx/other/target |only
42 files changed, 439 insertions(+), 441 deletions(-)
Title: Fit Semiparametric Mixture Cure Models
Diff between smcure versions 1.0 dated 2012-02-11 and 2.0 dated 2012-09-26
Description: An R-package for Estimating Semiparametric PH and AFT
Mixture Cure Models
Author: Chao Cai, Yubo Zou, Yingwei Peng, Jiajia Zhang
Maintainer: Chao Cai
DESCRIPTION | 6 ++---
MD5 | 24 +++++++++++------------
man/bmt.Rd | 23 +++++++++++++---------
man/coefsmcure.Rd | 11 +++++-----
man/e1684.Rd | 18 ++++++-----------
man/em.Rd | 12 +++++------
man/plotpredictsmcure.Rd | 17 ++++++++++------
man/predictsmcure.Rd | 21 ++++++++++++++------
man/printsmcure.Rd | 16 +++++----------
man/smcure-package.Rd | 30 +++++++++++++++++++++-------
man/smcure.Rd | 49 ++++++++++++++++++++++++++++++++++-------------
man/smrank.Rd | 14 ++++++-------
man/smsurv.Rd | 15 +++-----------
13 files changed, 149 insertions(+), 107 deletions(-)