Title: Mapping global data, vector and raster.
Diff between rworldmap versions 0.1310 dated 2012-04-25 and 1.01 dated 2012-10-03
Description: Enables mapping of country level and gridded user
datasets.
Author: Andy South, with contributions from Joe Scutt-Phillips, Barry
Rowlingson, Roger Bivand & Pru Foster
Maintainer: Andy South
rworldmap-0.1310/rworldmap/data/wrld_coarse.rda |only
rworldmap-0.1310/rworldmap/data/wrld_simpl.rda |only
rworldmap-0.1310/rworldmap/data/wrld_simpl_Mollweide.rda |only
rworldmap-0.1310/rworldmap/data/wrld_simpl_lessIslands.rda |only
rworldmap-0.1310/rworldmap/inst/doc/ChangeLog.txt |only
rworldmap-0.1310/rworldmap/man/wrld_coarse.Rd |only
rworldmap-0.1310/rworldmap/man/wrld_simpl.Rd |only
rworldmap-0.1310/rworldmap/man/wrld_simpl_Mollweide.Rd |only
rworldmap-0.1310/rworldmap/man/wrld_simpl_lessIslands.Rd |only
rworldmap-1.01/rworldmap/ChangeLog |only
rworldmap-1.01/rworldmap/DESCRIPTION | 15 -
rworldmap-1.01/rworldmap/MD5 | 114 +++++----
rworldmap-1.01/rworldmap/NAMESPACE | 3
rworldmap-1.01/rworldmap/R/aggregateHalfDegreeGridToCountries.R | 1
rworldmap-1.01/rworldmap/R/barplotCountryData.r | 2
rworldmap-1.01/rworldmap/R/country2Region.R | 9
rworldmap-1.01/rworldmap/R/getMap.r | 102 +++++---
rworldmap-1.01/rworldmap/R/joinCountryData2Map.R | 118 +++++++---
rworldmap-1.01/rworldmap/R/joinData2Map.R | 6
rworldmap-1.01/rworldmap/R/mapBars.r | 5
rworldmap-1.01/rworldmap/R/mapBubbles.r | 72 ++++--
rworldmap-1.01/rworldmap/R/mapByRegion.r | 1
rworldmap-1.01/rworldmap/R/mapCountryData.R | 37 +--
rworldmap-1.01/rworldmap/R/mapDevice.r | 4
rworldmap-1.01/rworldmap/R/mapGriddedData.r | 11
rworldmap-1.01/rworldmap/R/mapHalfDegreeGridToCountries.R | 2
rworldmap-1.01/rworldmap/R/mapPies.r | 5
rworldmap-1.01/rworldmap/R/mapPolys.R | 19 +
rworldmap-1.01/rworldmap/R/rwmGetISO3.r |only
rworldmap-1.01/rworldmap/R/rwmNewMapPlot.r | 17 -
rworldmap-1.01/rworldmap/R/rworldmapExamples.R | 2
rworldmap-1.01/rworldmap/R/setMapExtents.R | 4
rworldmap-1.01/rworldmap/data/coastsCoarse.rda |only
rworldmap-1.01/rworldmap/data/countriesCoarse.rda |only
rworldmap-1.01/rworldmap/data/countriesCoarseLessIslands.rda |only
rworldmap-1.01/rworldmap/data/countriesLow.rda |only
rworldmap-1.01/rworldmap/data/countryExData.rda |binary
rworldmap-1.01/rworldmap/data/countryRegions.rda |binary
rworldmap-1.01/rworldmap/data/countrySynonyms.rda |only
rworldmap-1.01/rworldmap/data/datalist | 9
rworldmap-1.01/rworldmap/data/gridCountriesNumeric.rda |binary
rworldmap-1.01/rworldmap/data/gridExData.rda |binary
rworldmap-1.01/rworldmap/inst/doc/rworldmap.pdf |binary
rworldmap-1.01/rworldmap/inst/doc/rworldmap.rnw | 22 -
rworldmap-1.01/rworldmap/inst/doc/rworldmapFAQ.Rnw | 103 ++++++--
rworldmap-1.01/rworldmap/inst/doc/rworldmapFAQ.pdf |binary
rworldmap-1.01/rworldmap/man/addMapLegend.Rd | 1
rworldmap-1.01/rworldmap/man/addMapLegendBoxes.Rd | 4
rworldmap-1.01/rworldmap/man/coastsCoarse.Rd |only
rworldmap-1.01/rworldmap/man/countriesCoarse.Rd |only
rworldmap-1.01/rworldmap/man/countriesCoarseLessIslands.Rd |only
rworldmap-1.01/rworldmap/man/countriesLow.Rd |only
rworldmap-1.01/rworldmap/man/countryRegions.Rd | 18 -
rworldmap-1.01/rworldmap/man/countrySynonyms.Rd |only
rworldmap-1.01/rworldmap/man/getMap.Rd | 6
rworldmap-1.01/rworldmap/man/identifyCountries.Rd | 2
rworldmap-1.01/rworldmap/man/joinCountryData2Map.Rd | 19 +
rworldmap-1.01/rworldmap/man/joinData2Map.Rd | 10
rworldmap-1.01/rworldmap/man/mapBars.Rd | 10
rworldmap-1.01/rworldmap/man/mapBubbles.Rd | 6
rworldmap-1.01/rworldmap/man/mapCountryData.Rd | 7
rworldmap-1.01/rworldmap/man/mapDevice.Rd | 2
rworldmap-1.01/rworldmap/man/mapHalfDegreeGridToCountries.Rd | 4
rworldmap-1.01/rworldmap/man/mapPies.Rd | 2
rworldmap-1.01/rworldmap/man/mapPolys.Rd | 4
rworldmap-1.01/rworldmap/man/rwmGetISO3.Rd |only
rworldmap-1.01/rworldmap/man/rworldmap-package.Rd | 9
rworldmap-1.01/rworldmap/vignettes/rworldmap.rnw | 22 -
rworldmap-1.01/rworldmap/vignettes/rworldmapFAQ.Rnw | 103 ++++++--
69 files changed, 587 insertions(+), 325 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-25 1.0.0
2012-06-13 0.9.9
2012-04-07 0.9.1
2011-12-15 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-04 0.5-1
2010-05-19 0.4-1
2010-04-04 0.3-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-15 1.1
2012-05-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-23 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-08 1.0-8
2011-09-30 1.0-7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-17 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-08 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-26 0.6-12
2011-10-10 0.6-11
2010-07-29 0.6-9
2010-04-03 0.6-8
2010-03-20 0.6-7
2009-11-22 0.6-5
2009-11-13 0.6-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-13 0.1-4
2012-03-01 0.1-3
2012-01-03 0.1-2
2010-09-05 0.1-1
Title: Functions for Kriging and Point Pattern Analysis
Diff between spatial versions 7.3-4 dated 2012-06-27 and 7.3-5 dated 2012-10-03
Description: Functions for kriging and point pattern analysis.
Author: Brian Ripley
Maintainer: Brian Ripley
spatial-7.3-4/spatial/po/R-en@quot.po |only
spatial-7.3-5/spatial/DESCRIPTION | 8
spatial-7.3-5/spatial/MD5 | 23 +-
spatial-7.3-5/spatial/R/kr.R | 2
spatial-7.3-5/spatial/inst/po/de/LC_MESSAGES/R-spatial.mo |binary
spatial-7.3-5/spatial/inst/po/en@quot/LC_MESSAGES/R-spatial.mo |binary
spatial-7.3-5/spatial/inst/po/fr/LC_MESSAGES/R-spatial.mo |binary
spatial-7.3-5/spatial/inst/po/pl/LC_MESSAGES/R-spatial.mo |binary
spatial-7.3-5/spatial/po/R-de.po | 9 -
spatial-7.3-5/spatial/po/R-fr.po | 9 -
spatial-7.3-5/spatial/po/R-pl.po | 83 ++++++++--
spatial-7.3-5/spatial/po/R-spatial.pot | 10 -
spatial-7.3-5/spatial/src/init.c | 5
13 files changed, 113 insertions(+), 36 deletions(-)
Title: Feed-forward Neural Networks and Multinomial Log-Linear Models
Diff between nnet versions 7.3-4 dated 2012-06-27 and 7.3-5 dated 2012-10-03
Description: Software for feed-forward neural networks with a single
hidden layer, and for multinomial log-linear models.
Author: Brian Ripley
Maintainer: Brian Ripley
nnet-7.3-4/nnet/po/R-en@quot.po |only
nnet-7.3-5/nnet/DESCRIPTION | 8 -
nnet-7.3-5/nnet/MD5 | 19 +---
nnet-7.3-5/nnet/R/nnet.R | 2
nnet-7.3-5/nnet/inst/po/de/LC_MESSAGES/R-nnet.mo |binary
nnet-7.3-5/nnet/inst/po/en@quot/LC_MESSAGES/R-nnet.mo |binary
nnet-7.3-5/nnet/inst/po/pl/LC_MESSAGES/R-nnet.mo |binary
nnet-7.3-5/nnet/po/R-de.po | 10 +-
nnet-7.3-5/nnet/po/R-nnet.pot | 5 -
nnet-7.3-5/nnet/po/R-pl.po | 82 ++++++++++++++++--
nnet-7.3-5/nnet/src/nnet.c | 5 +
11 files changed, 100 insertions(+), 31 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Diff between MASS versions 7.3-21 dated 2012-08-30 and 7.3-22 dated 2012-10-03
Description: Functions and datasets to support Venables and Ripley,
'Modern Applied Statistics with S' (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph], Bill Venables [ctb], Kurt Hornik
[trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial
port ca 1998), David Firth [ctb]
Maintainer: Brian Ripley
DESCRIPTION | 10
MD5 | 62 +-
R/add.R | 20
R/area.R | 3
R/boxcox.R | 5
R/cov.trob.R | 2
R/fitdistr.R | 15
R/gamma.shape.R | 5
R/glmmPQL.R | 2
R/isoMDS.R | 2
R/lda.R | 13
R/logtrans.R | 4
R/lqs.R | 14
R/neg.bin.R | 2
R/negbin.R | 15
R/polr.R | 2
R/qda.R | 18
R/rlm.R | 4
R/sammon.R | 2
R/stdres.R | 14
R/stepAIC.R | 4
inst/NEWS | 2
inst/po/de/LC_MESSAGES/R-MASS.mo |binary
inst/po/en@quot/LC_MESSAGES/R-MASS.mo |binary
inst/po/fr/LC_MESSAGES/R-MASS.mo |binary
inst/po/pl/LC_MESSAGES/R-MASS.mo |binary
po/R-MASS.pot | 126 ++---
po/R-de.po | 393 ++++++++--------
po/R-fr.po | 204 ++++----
po/R-pl.po | 824 ++++++++++++++++++++++++++++------
src/MASS.c | 5
tests/polr.R | 6
32 files changed, 1178 insertions(+), 600 deletions(-)
Title: Inline C, C++, Fortran function calls from R
Diff between inline versions 0.3.9 dated 2012-10-02 and 0.3.10 dated 2012-10-03
Description: Functionality to dynamically define R functions and S4
methods with in-lined C, C++ or Fortran code supporting .C and
.Call calling conventions.
Author: Oleg Sklyar, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel,
Romain Francois
Maintainer: Dirk Eddelbuettel
inline-0.3.10/inline/DESCRIPTION | 13 ++--
inline-0.3.10/inline/MD5 | 12 ++--
inline-0.3.10/inline/NAMESPACE | 2
inline-0.3.10/inline/R/cxxfunction.R | 87 ++++++++++++++++----------------
inline-0.3.10/inline/R/getDynLib.R | 6 +-
inline-0.3.10/inline/inst |only
inline-0.3.10/inline/man/cxxfunction.Rd | 11 +++-
inline-0.3.9/inline/NEWS |only
8 files changed, 70 insertions(+), 61 deletions(-)
Title: Functions for Classification
Diff between class versions 7.3-4 dated 2012-06-27 and 7.3-5 dated 2012-10-03
Description: Various functions for classification.
Author: Brian Ripley
Maintainer: Brian Ripley
class-7.3-4/class/po/R-en@quot.po |only
class-7.3-5/class/DESCRIPTION | 8 -
class-7.3-5/class/MD5 | 27 ++--
class-7.3-5/class/R/SOM.R | 2
class-7.3-5/class/R/lvq.R | 2
class-7.3-5/class/R/multiedit.R | 3
class-7.3-5/class/inst/po/de/LC_MESSAGES/R-class.mo |binary
class-7.3-5/class/inst/po/en@quot/LC_MESSAGES/R-class.mo |binary
class-7.3-5/class/inst/po/fr/LC_MESSAGES/R-class.mo |binary
class-7.3-5/class/inst/po/pl/LC_MESSAGES/R-class.mo |binary
class-7.3-5/class/po/R-class.pot | 14 --
class-7.3-5/class/po/R-de.po | 19 +--
class-7.3-5/class/po/R-fr.po | 13 --
class-7.3-5/class/po/R-pl.po | 93 +++++++++++++--
class-7.3-5/class/src/class.c | 5
15 files changed, 125 insertions(+), 61 deletions(-)
Title: Isotonic Inference for Circular data
Diff between isocir versions 1.1 dated 2012-04-04 and 1.1-1 dated 2012-10-03
Description: This is a package to draw isotonic inference for circular
data.
Author: Sandra Barragán and Miguel A. Fernández.
Maintainer: Sandra Barragán
.Rinstignore |only
DESCRIPTION | 8 ++++----
MD5 | 29 +++++++++++++++++------------
NEWS | 29 ++++++++++++++++++++---------
R/cond.test.R | 6 +++---
R/isocir.R | 7 ++++---
inst/doc/esqbasico.pdf |only
inst/doc/isocir.Rnw |only
inst/doc/isocir.pdf |binary
inst/doc/isocir.tex |only
inst/doc/library1.bib |only
inst/doc/phi.pdf |only
man/CIRE.Rd | 2 +-
man/cirdata.Rd | 15 +++++++++++++++
man/cirgenes.Rd | 31 ++++++++++++++++++++++++++++++-
man/cond.test.Rd | 10 +++++-----
man/datareplic.Rd | 10 ++++++++++
man/isocir-package.Rd | 2 +-
man/sce.Rd | 2 +-
19 files changed, 111 insertions(+), 40 deletions(-)
Title: Kriging-based optimization for computer experiments
Diff between DiceOptim versions 1.3.2 dated 2012-09-17 and 1.3.3 dated 2012-10-03
Description: Expected Improvement. EGO algorithm. Multipoints EI and
parallelized versions of EGO: Constant Liars. Noisy
Kriging-based Optimization criteria and algorithms, including
AEI, AKG, EQI, and EI.plugin.
Author: D. Ginsbourger, V. Picheny, O. Roustant, with contributions by
C. Chevalier and T. Wagner
Maintainer: D. Ginsbourger
DESCRIPTION | 10 +-
MD5 | 9 +-
inst |only
man/DiceOptim-package.Rd | 203 +++++++++++++++++++++++------------------------
man/EGO.nsteps.Rd | 7 -
man/noisy.optimizer.Rd | 4
6 files changed, 119 insertions(+), 114 deletions(-)
Title: Kriging methods for computer experiments
Diff between DiceKriging versions 1.4.0 dated 2012-08-21 and 1.4.1 dated 2012-10-03
Description: Estimation, validation and prediction of kriging models.
Important functions : km, print.km, plot.km, predict.km.
Author: Olivier Roustant, David Ginsbourger, Yves Deville. Contributor:
Clement Chevalier.
Maintainer: Olivier Roustant
DESCRIPTION | 10 +++++-----
MD5 | 5 +++--
inst |only
man/DiceKriging-package.Rd | 9 ++++++---
4 files changed, 14 insertions(+), 10 deletions(-)
Title: Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
Diff between trio versions 1.7.0 dated 2012-07-30 and 1.7.1 dated 2012-10-03
Description: Testing SNPs and SNP interactions with a genotypic TDT.
This package furthermore contains functions for computing
pairwise values of LD measures and for identifying LD blocks,
as well as functions for setting up matched case pseudo-control
genotype data for case-parent trios in order to run trio logic
regression, for imputing missing genotypes in trios, for
simulating case-parent trios with disease risk dependent on SNP
interaction, and for power and sample size calculation in trio
data.
Author: Holger Schwender, Qing Li, Christoph Neumann, Ingo Ruczinski
Maintainer: Holger Schwender
DESCRIPTION | 17 +++++++++--------
MD5 | 6 +++---
R/colGxE.R | 2 +-
inst/doc/trio.pdf |binary
4 files changed, 13 insertions(+), 12 deletions(-)
Title: Conversion of R regression output to LaTeX tables.
Diff between texreg versions 1.02 dated 2012-06-21 and 1.06 dated 2012-10-03
Description: texreg converts coefficients, standard errors,
significance stars, and goodness-of-fit statistics of
statistical models into LaTeX tables. Either a single model or
a list of models can be combined in a single table. The output
is customizable. New model types can be easily implemented.
Author: Philip Leifeld
Maintainer: Philip Leifeld
DESCRIPTION | 16 +-
MD5 | 19 +-
NAMESPACE | 12 +
R/texreg.R | 313 ++++++++++++++++++++++++++++++++++---------------
inst/doc/texreg.Rnw | 85 ++++++++++---
inst/doc/texreg.pdf |binary
man/coeftostring.Rd |only
man/extract-methods.Rd |only
man/extract.Rd |only
man/texreg-package.Rd | 12 -
man/texreg.Rd | 17 +-
vignettes/texreg.Rnw | 85 ++++++++++---
12 files changed, 396 insertions(+), 163 deletions(-)
Title: Analysis of High-Dimensional Categorical Data such as SNP Data
Diff between scrime versions 1.2.8 dated 2011-11-02 and 1.2.9 dated 2012-10-03
Description: Tools for the analysis of high-dimensional data
developed/implemented at the group "Statistical Complexity
Reduction In Molecular Epidemiology" (SCRIME). Main focus is
on SNP data. But most of the functions can also be applied to
other types of categorical data.
Author: Holger Schwender, with a contribution of Arno Fritsch
Maintainer: Holger Schwender
DESCRIPTION | 17 +++++++++--------
MD5 | 6 +++---
R/colEpistatic.R | 4 ++--
inst/CHANGES | 6 ++++++
4 files changed, 20 insertions(+), 13 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Diff between pbdMPI versions 0.1-0 dated 2012-09-03 and 0.1-1 dated 2012-10-03
Description: pbdMPI provides an efficient interface to MPI by utilizing
S4 classes and methods with a focus on Single Program/Multiple
Data (SPMD) parallel programming style, which is intended for
batch parallel execution.
Author: Wei-Chen Chen [aut, cre], George Ostrouchov [aut], Drew Schmidt
[aut], Pragneshkumar Patel [aut], Hao Yu [aut]
Maintainer: Wei-Chen Chen
pbdMPI-0.1-0/pbdMPI/R/get_path.r.in |only
pbdMPI-0.1-0/pbdMPI/R/windows/find_mpi.r |only
pbdMPI-0.1-0/pbdMPI/R/windows/get_path.r |only
pbdMPI-0.1-0/pbdMPI/inst/doc/pbdMPI-include/02-introduction.tex |only
pbdMPI-0.1-0/pbdMPI/inst/doc/pbdMPI-include/03-performance.tex |only
pbdMPI-0.1-0/pbdMPI/inst/doc/pbdMPI-include/04-faq.tex |only
pbdMPI-0.1-0/pbdMPI/inst/doc/pbdMPI-include/05-windows.tex |only
pbdMPI-0.1-0/pbdMPI/inst/doc/pbdMPI-include/06-analog.tex |only
pbdMPI-0.1-0/pbdMPI/inst/include |only
pbdMPI-0.1-0/pbdMPI/man/xx_print_cat.Rd |only
pbdMPI-0.1-0/pbdMPI/man/yy_get.jid.Rd |only
pbdMPI-0.1-1/pbdMPI/ChangeLog | 5
pbdMPI-0.1-1/pbdMPI/DESCRIPTION | 10
pbdMPI-0.1-1/pbdMPI/MD5 | 122 -
pbdMPI-0.1-1/pbdMPI/NAMESPACE | 14
pbdMPI-0.1-1/pbdMPI/R/api_apply.r | 6
pbdMPI-0.1-1/pbdMPI/R/api_lapply.r | 6
pbdMPI-0.1-1/pbdMPI/R/api_sapply.r | 6
pbdMPI-0.1-1/pbdMPI/R/comm_seed.r |only
pbdMPI-0.1-1/pbdMPI/R/g_sort.r |only
pbdMPI-0.1-1/pbdMPI/R/get_mpi.r |only
pbdMPI-0.1-1/pbdMPI/R/spmd_communicator.r | 13
pbdMPI-0.1-1/pbdMPI/R/spmd_tool.r | 12
pbdMPI-0.1-1/pbdMPI/R/windows/zzz.r | 16
pbdMPI-0.1-1/pbdMPI/R/zzz.r.in | 28
pbdMPI-0.1-1/pbdMPI/cleanup | 6
pbdMPI-0.1-1/pbdMPI/configure | 1176 ----------
pbdMPI-0.1-1/pbdMPI/configure.ac | 1112 ++++-----
pbdMPI-0.1-1/pbdMPI/demo/00Index | 20
pbdMPI-0.1-1/pbdMPI/demo/seed.r |only
pbdMPI-0.1-1/pbdMPI/demo/sort.r |only
pbdMPI-0.1-1/pbdMPI/inst/CITATION | 23
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-guide.Rnw | 17
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-guide.pdf |binary
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-include/01-acknowledgement.tex | 2
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-include/01-introduction.tex |only
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-include/02-performance.tex |only
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-include/03-faq.tex |only
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-include/04-windows.tex |only
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-include/05-analog.tex |only
pbdMPI-0.1-1/pbdMPI/inst/doc/pbdMPI-include/pbdMPI.bib | 37
pbdMPI-0.1-1/pbdMPI/inst/examples/test_performance/00_test_all.sh | 7
pbdMPI-0.1-1/pbdMPI/inst/examples/test_performance/00_test_all.win | 7
pbdMPI-0.1-1/pbdMPI/man/00_pbdMPI-package.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/11_d.control.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/aa_allgather-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/aa_allreduce-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/aa_bcast-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/aa_gather-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/aa_reduce-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/aa_scatter-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/ab_recv-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/ab_send-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/ac_irecv-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/ac_isend-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/ad_sendrecv-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/ad_sendrecv.replace-method.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/cc_arrange.mpi.apts.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/cc_comm.Rd | 4
pbdMPI-0.1-1/pbdMPI/man/dd_info.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/dd_prob.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/dd_wait.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/ww_get.jid.Rd |only
pbdMPI-0.1-1/pbdMPI/man/ww_print_cat.Rd |only
pbdMPI-0.1-1/pbdMPI/man/ww_seed.Rd |only
pbdMPI-0.1-1/pbdMPI/man/xx_g.sort.Rd |only
pbdMPI-0.1-1/pbdMPI/man/yy_api.apply.Rd | 2
pbdMPI-0.1-1/pbdMPI/man/zz_internal.Rd |only
pbdMPI-0.1-1/pbdMPI/man/zz_spmd.internal.Rd | 22
pbdMPI-0.1-1/pbdMPI/src/Makevars.in | 23
pbdMPI-0.1-1/pbdMPI/src/Makevars.win | 25
pbdMPI-0.1-1/pbdMPI/src/g_api.h |only
pbdMPI-0.1-1/pbdMPI/src/g_sort_double.c |only
pbdMPI-0.1-1/pbdMPI/src/g_sort_integer.c |only
pbdMPI-0.1-1/pbdMPI/src/spmd.c | 9
75 files changed, 839 insertions(+), 1927 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 5.15-023 dated 2012-03-20 and 5.15-044 dated 2012-10-03
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
caret-5.15-023/caret/R/makeCubistFiles.R |only
caret-5.15-044/caret/DESCRIPTION | 18 +-
caret-5.15-044/caret/MD5 | 145 ++++++++--------
caret-5.15-044/caret/NAMESPACE | 8
caret-5.15-044/caret/R/aaa.R |only
caret-5.15-044/caret/R/avNNet.R | 163 +++++++++----------
caret-5.15-044/caret/R/bag.R | 2
caret-5.15-044/caret/R/classLevels.R | 6
caret-5.15-044/caret/R/createGrid.R | 23 --
caret-5.15-044/caret/R/createModel.R | 133 ++++++++-------
caret-5.15-044/caret/R/icr.R | 2
caret-5.15-044/caret/R/knn3.R | 9 +
caret-5.15-044/caret/R/lift.R | 63 ++++---
caret-5.15-044/caret/R/misc.R | 38 +++-
caret-5.15-044/caret/R/modelLookup.R | 98 ++++++++---
caret-5.15-044/caret/R/plot.train.R | 18 +-
caret-5.15-044/caret/R/plsda.R | 18 --
caret-5.15-044/caret/R/postResample.R | 53 +++---
caret-5.15-044/caret/R/predictionFunction.R | 89 +++-------
caret-5.15-044/caret/R/predictors.R | 34 ++-
caret-5.15-044/caret/R/probFunction.R | 74 +++++---
caret-5.15-044/caret/R/resamples.R | 54 ++++--
caret-5.15-044/caret/R/rfe.R | 85 ++++++++-
caret-5.15-044/caret/R/sampling.R | 72 ++++----
caret-5.15-044/caret/R/selection.R | 10 -
caret-5.15-044/caret/R/sensitivity.R | 12 +
caret-5.15-044/caret/R/specificty.R | 12 +
caret-5.15-044/caret/R/train.default.R | 3
caret-5.15-044/caret/R/varImp.R | 147 +++++++++++++++++
caret-5.15-044/caret/R/workflows.R | 147 +++++++++++++----
caret-5.15-044/caret/inst/NEWS.Rd | 117 +++++++++++++
caret-5.15-044/caret/inst/doc/caretMisc.Rnw | 4
caret-5.15-044/caret/inst/doc/caretMisc.pdf |binary
caret-5.15-044/caret/inst/doc/caretSelection.Rnw | 2
caret-5.15-044/caret/inst/doc/caretSelection.pdf |binary
caret-5.15-044/caret/inst/doc/caretTrain.Rnw | 4
caret-5.15-044/caret/inst/doc/caretTrain.pdf |binary
caret-5.15-044/caret/inst/doc/caretVarImp.pdf |binary
caret-5.15-044/caret/inst/modelKey.txt | 2
caret-5.15-044/caret/man/as.table.confusionMatrix.Rd | 15 -
caret-5.15-044/caret/man/avNNet.Rd | 6
caret-5.15-044/caret/man/bag.Rd | 26 +--
caret-5.15-044/caret/man/bagEarth.Rd | 2
caret-5.15-044/caret/man/calibration.Rd | 6
caret-5.15-044/caret/man/caret-internal.Rd | 2
caret-5.15-044/caret/man/confusionMatrix.Rd | 14 -
caret-5.15-044/caret/man/confusionMatrix.train.Rd | 2
caret-5.15-044/caret/man/createGrid.Rd | 3
caret-5.15-044/caret/man/downSample.Rd |only
caret-5.15-044/caret/man/extractPrediction.Rd | 41 ----
caret-5.15-044/caret/man/knn3.Rd | 3
caret-5.15-044/caret/man/lattice.Rd | 2
caret-5.15-044/caret/man/lattice.diff.resamples.Rd | 8
caret-5.15-044/caret/man/lift.Rd | 19 +-
caret-5.15-044/caret/man/plot.train.Rd | 8
caret-5.15-044/caret/man/plotClassProbs.Rd | 3
caret-5.15-044/caret/man/plsda.Rd | 17 -
caret-5.15-044/caret/man/preProcess.Rd | 8
caret-5.15-044/caret/man/predict.bagEarth.Rd | 3
caret-5.15-044/caret/man/print.train.Rd | 7
caret-5.15-044/caret/man/resampleHist.Rd | 2
caret-5.15-044/caret/man/resamples.Rd | 59 +++---
caret-5.15-044/caret/man/rfe.Rd | 2
caret-5.15-044/caret/man/rfeFunctions.Rd | 64 +++++++
caret-5.15-044/caret/man/sbf.Rd | 8
caret-5.15-044/caret/man/selection.Rd | 4
caret-5.15-044/caret/man/sensitivity.Rd | 10 -
caret-5.15-044/caret/man/summary.bagEarth.Rd | 2
caret-5.15-044/caret/man/tecator.Rd | 10 -
caret-5.15-044/caret/man/train.Rd | 74 ++++----
caret-5.15-044/caret/man/update.train.Rd | 2
caret-5.15-044/caret/man/varImp.Rd | 58 ++++++
caret-5.15-044/caret/vignettes/caretMisc.Rnw | 4
caret-5.15-044/caret/vignettes/caretSelection.Rnw | 2
caret-5.15-044/caret/vignettes/caretTrain.Rnw | 4
75 files changed, 1441 insertions(+), 724 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Diff between arm versions 1.5-07 dated 2012-09-26 and 1.5-08 dated 2012-10-03
Description: R functions for processing lm, glm, mer and polr outputs.
Author: Andrew Gelman
Maintainer: Yu-Sung Su
CHANGELOG | 4 ++++
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/bayesglm.R | 45 ++++++++++++++++++++++++++++-----------------
R/model.matrix.bayes.R | 46 ++++++++++++++++++++++++++--------------------
5 files changed, 66 insertions(+), 45 deletions(-)