Title: Rmisc: Ryan Miscellaneous
Diff between Rmisc versions 1.2 dated 2012-07-19 and 1.3 dated 2012-10-05
Description: The Rmisc library contains many functions useful for data
analysis and utility operations.
Author: Ryan M. Hope
Maintainer: Ryan M. Hope
DESCRIPTION | 8 ++++----
MD5 | 8 +++++---
NAMESPACE | 2 +-
R/rsi.R |only
man/Rmisc-package.Rd | 4 ++--
man/rsi.Rd |only
6 files changed, 12 insertions(+), 10 deletions(-)
Title: Multiple Hypotheses Testing For Variable Selection
Diff between mht versions 2.00 dated 2012-05-10 and 2.011 dated 2012-10-05
Description: Multiple Hypotheses Testing For Variable Selection
Author: F.Rohart
Maintainer: F.Rohart
DESCRIPTION | 6
MD5 | 42 ++--
R/bolassofunction.R | 14 -
R/decoupdyadfunction.R | 46 +++--
R/proc_ordfunction.R | 2
R/procbolfunction.R | 47 ++---
R/quantileprocfinalfunction.R | 10 -
R/quantiletest.R | 4
R/refit.proctest.R | 19 +-
R/refit.proctest_ord.R | 15 -
man/bolasso.Rd | 3
man/decoupdyad.Rd | 4
man/procbol.Rd | 3
man/refit.proctest.Rd | 3
src/gaussrand.cpp |only
src/gaussrand.h | 23 --
src/maximum.cpp |only
src/maximum.h | 30 ---
src/mht.cpp | 384 +++++++++++++++++++++---------------------
src/produit_mat.cpp |only
src/produit_mat.h | 27 --
src/scale.cpp |only
src/scale.h |only
src/transpose.cpp |only
src/transpose.h | 17 -
25 files changed, 336 insertions(+), 363 deletions(-)
Title: Robust Generalized Additive Model
Diff between rgam versions 0.5.1 dated 2011-02-24 and 0.6.1 dated 2012-10-05
Description: Robust Generalized Additive Model
Author: Matias Salibian-Barrera, Davor Cubranic, and Azadeh Alimadad
Maintainer: Davor Cubranic
DESCRIPTION | 8 ++++----
MD5 |only
man/predict.rgam.Rd | 2 +-
src/loess.cpp | 43 +++++++++----------------------------------
src/loessc.c |only
src/loessf.f |only
6 files changed, 14 insertions(+), 39 deletions(-)
Title: Simulation and Analysis of Random Fields
Diff between RandomFields versions 2.0.57 dated 2012-07-10 and 2.0.59 dated 2012-10-05
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
Author: Martin Schlather
Maintainer: Martin Schlather
DESCRIPTION | 12 +--
MD5 | 144 +++++++++++++++++++++++-----------------------
man/CondSimu.Rd | 4 -
man/Covariance.Rd | 4 -
man/CovarianceFct.Rd | 4 -
man/Dev.Rd | 4 -
man/EmpiricalVariogram.Rd | 4 -
man/Forest.Rd | 4 -
man/GaussRF.Rd | 4 -
man/GetPracticalRange.Rd | 4 -
man/GetRegisterInfo.Rd | 4 -
man/Kriging.Rd | 4 -
man/Locator.Rd | 4 -
man/MaxStableRF.Rd | 4 -
man/Print.Rd | 4 -
man/PrintModelList.Rd | 4 -
man/RFMethods.Rd | 4 -
man/RFparameters.Rd | 4 -
man/RandomFields.Rd | 4 -
man/Readline.Rd | 4 -
man/Registers.Rd | 4 -
man/ShowModels.Rd | 4 -
man/SimulateRF.Rd | 4 -
man/auxiliary.fcts.Rd | 4 -
man/changings.Rd | 4 -
man/eval.parameters.Rd | 4 -
man/fileexists.Rd | 4 -
man/fitvario.Rd | 4 -
man/fractal.Rd | 4 -
man/getactions.Rd | 4 -
man/hostname.Rd | 4 -
man/hurst.Rd | 4 -
man/papers.Rd | 4 -
man/parameter.range.Rd | 4 -
man/parampositions.Rd | 4 -
man/regression.Rd | 4 -
man/sleep.Rd | 4 -
man/soil.Rd | 2
man/useraction.Rd | 4 -
man/userinput.Rd | 4 -
src/Average.cc | 2
src/D.H.cc | 2
src/Gneiting.cc | 4 -
src/InternalCov.cc | 10 +--
src/KeyInfo.cc | 2
src/MLE.cc | 2
src/MPP.cc | 2
src/MPPFcts.cc | 2
src/Primitive.cc | 2
src/RF.h | 2
src/Xempvario.cc | 2
src/auxiliary.cc | 2
src/circulant.cc | 2
src/direct.cc | 2
src/empvario.cc | 2
src/error.h | 1
src/extremes.cc | 2
src/getNset.cc | 4 -
src/hyperplan.cc | 2
src/initNerror.cc | 8 +-
src/kleinn.cc | 2
src/kriging.cc | 2
src/markov.cc | 2
src/metropolis.cc | 2
src/nugget.cc | 2
src/operator.cc | 2
src/sequential.cc | 2
src/simu.cc | 2
src/spatialMA.cc | 2
src/spectral.cc | 2
src/tbm.cc | 2
src/userinterfaces.cc | 2
src/win_linux_aux.cc | 2
73 files changed, 196 insertions(+), 193 deletions(-)
Title: Functions for actuarial scientists
Diff between CompLognormal versions 1.0 dated 2012-10-02 and 2.0 dated 2012-10-05
Description: Computes the probability density function, cumulative
distribution function, quantile function, random numbers of any
composite model based on the lognormal distribution.
Author: Saralees Nadarajah
Maintainer: Saralees Nadarajah
CompLognormal-1.0/CompLognormal/man/nlogl.complnorm.Rd |only
CompLognormal-2.0/CompLognormal/DESCRIPTION | 13
CompLognormal-2.0/CompLognormal/MD5 | 15
CompLognormal-2.0/CompLognormal/R/CompLognormal.R | 199 +++--------
CompLognormal-2.0/CompLognormal/man/CompLognormal-package.Rd | 10
CompLognormal-2.0/CompLognormal/man/dcomplnorm.Rd | 9
CompLognormal-2.0/CompLognormal/man/pcomplnorm.Rd | 9
CompLognormal-2.0/CompLognormal/man/qcomplnorm.Rd | 9
CompLognormal-2.0/CompLognormal/man/rcomplnorm.Rd | 6
9 files changed, 95 insertions(+), 175 deletions(-)
Title: Computes Phylogenetic eigenVectors Regression and Phylogentic
Signal-Representation curve (with null and Brownian
expectancies)
Diff between PVR versions 0.1 dated 2012-07-05 and 0.2 dated 2012-10-05
Description: Computes PVR and PSR.
Author: Thiago Santos, Jose Alexandre Diniz-Filho, Thiago Rangel e Luis
Mauricio Bini
Maintainer: Thiago Santos
PVR-0.1/PVR/R/PVR-internal.R |only
PVR-0.2/PVR/DESCRIPTION | 16 ++---
PVR-0.2/PVR/MD5 | 28 ++++-----
PVR-0.2/PVR/R/PSR.R | 124 +++++++++++++++++++++++++++--------------
PVR-0.2/PVR/R/PSRplot.R | 14 ++--
PVR-0.2/PVR/R/PVR-Internal.R |only
PVR-0.2/PVR/R/PVR.R | 45 +++++++++-----
PVR-0.2/PVR/R/PVRdecomp.R | 10 ---
PVR-0.2/PVR/R/VarPartplot.R | 9 +-
PVR-0.2/PVR/R/zzz.R | 10 ++-
PVR-0.2/PVR/man/PSR-class.Rd | 2
PVR-0.2/PVR/man/PSR.Rd | 16 ++---
PVR-0.2/PVR/man/PSRplot.Rd | 4 -
PVR-0.2/PVR/man/PVR-package.Rd | 4 -
PVR-0.2/PVR/man/PVR.Rd | 14 ++--
PVR-0.2/PVR/man/VarPartplot.Rd | 4 -
16 files changed, 178 insertions(+), 122 deletions(-)
Title: Weighted k-Nearest Neighbors
Diff between kknn versions 1.1-2 dated 2012-06-22 and 1.2-0 dated 2012-10-05
Description: Weighted k-Nearest Neighbors Classification, Regression
and Clustering
Author: Klaus Schliep & Klaus Hechenbichler
Maintainer: Klaus Schliep
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 7 +++++++
R/kknn.R | 49 +++++++++++++++++++++++++++++++++++++------------
man/kknn.Rd | 26 ++++++++++++++++++--------
man/simulation.Rd | 6 ++++--
man/train.kknn.Rd | 20 ++++++++++++--------
7 files changed, 88 insertions(+), 40 deletions(-)
Title: 2D and 3D Hive Plots for R
Diff between HiveR versions 0.2-1 dated 2011-12-13 and 0.2-7 dated 2012-10-05
Description: HiveR is an R package for creating and plotting 2D and 3D
hive plots. Hive plots are a unique method of displaying
networks of many types in which node properties are mapped to
axes using meaningful properties rather than being arbitrarily
positioned. The hive plot concept was invented by Martin
Krzywinski at the Genome Science Center (www.hiveplot.net/).
Keywords: networks, food webs, linnet, systems biology,
bioinformatics.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson
HiveR-0.2-1/HiveR/data/.Rhistory |only
HiveR-0.2-1/HiveR/inst/extdata/E_coli/.Rhistory |only
HiveR-0.2-1/HiveR/inst/extdata/E_coli/EdgeInst.csv |only
HiveR-0.2-1/HiveR/inst/extdata/E_coli/NodeInst.csv |only
HiveR-0.2-1/HiveR/inst/extdata/E_coli/NodeLabels.csv |only
HiveR-0.2-1/HiveR/inst/extdata/E_coli/ecoli.dot |only
HiveR-0.2-1/HiveR/vignettes |only
HiveR-0.2-7/HiveR/DESCRIPTION | 20
HiveR-0.2-7/HiveR/MD5 | 61 -
HiveR-0.2-7/HiveR/NAMESPACE | 7
HiveR-0.2-7/HiveR/NEWS | 39
HiveR-0.2-7/HiveR/R/animateHive.R |only
HiveR-0.2-7/HiveR/R/dot2HPD.R | 57 -
HiveR-0.2-7/HiveR/R/manipAxis.R | 37
HiveR-0.2-7/HiveR/R/mineHPD.R | 105 ++
HiveR-0.2-7/HiveR/R/plot3dHive.R | 9
HiveR-0.2-7/HiveR/R/plotHive.R | 181 +---
HiveR-0.2-7/HiveR/R/sumHPD.R | 87 +-
HiveR-0.2-7/HiveR/README.asciidoc | 8
HiveR-0.2-7/HiveR/inst/doc/HiveR.Rnw | 699 -----------------
HiveR-0.2-7/HiveR/inst/doc/HiveR.pdf |binary
HiveR-0.2-7/HiveR/inst/extdata/E_coli/E_coli_P.dot |only
HiveR-0.2-7/HiveR/inst/extdata/E_coli/E_coli_TF.dot |only
HiveR-0.2-7/HiveR/inst/extdata/E_coli/EdgeInst_P.csv |only
HiveR-0.2-7/HiveR/inst/extdata/E_coli/EdgeInst_TF.csv |only
HiveR-0.2-7/HiveR/inst/extdata/E_coli/NodeInst_P.csv |only
HiveR-0.2-7/HiveR/inst/extdata/E_coli/NodeLabels_P.csv |only
HiveR-0.2-7/HiveR/inst/extdata/E_coli/README | 19
HiveR-0.2-7/HiveR/man/HiveR-package.Rd | 6
HiveR-0.2-7/HiveR/man/adj2HPD.Rd | 2
HiveR-0.2-7/HiveR/man/animateHive.Rd |only
HiveR-0.2-7/HiveR/man/chkHPD.Rd | 2
HiveR-0.2-7/HiveR/man/dot2HPD.Rd | 4
HiveR-0.2-7/HiveR/man/manipAxis.Rd | 16
HiveR-0.2-7/HiveR/man/mineHPD.Rd | 6
HiveR-0.2-7/HiveR/man/plotHive.Rd | 4
HiveR-0.2-7/HiveR/man/rcsr.Rd | 2
HiveR-0.2-7/HiveR/man/sumHPD.Rd | 6
38 files changed, 442 insertions(+), 935 deletions(-)
Title: Genetic diversity partition statistics and Informative locus
selection.
Diff between diveRsity versions 1.2.2 dated 2012-09-12 and 1.2.3 dated 2012-10-05
Description: diveRsity is a package which allows the calculation of
both genetic diversity partition statistics, genetic
differentiation statistics and locus informativeness for
ancestry assignment. It also provides users with various option
to calculate bootstrapped 95% confidence intervals both across
loci, for pairwise population comparisons and to plot these
results interactively. V1.2 and up provides parallel computing
capabilities and pairwise results without bootstrapping. Weir
and Cockerham's 1984 F-statistics are now also calculated.
Calculated statistics include Jost's D, Hedrick's Gst, Nei's
Gst, Weir and Cockerham's Fst and Rosenberg's et al's locus
informativeness index.
Author: Kevin Keenan,
Maintainer: Kevin Keenan
diveRsity-1.2.2/diveRsity/R/diveRsity_v1.2.2.R |only
diveRsity-1.2.2/diveRsity/doc |only
diveRsity-1.2.3/diveRsity/DESCRIPTION | 16 ++++++++++------
diveRsity-1.2.3/diveRsity/MD5 | 10 +++++-----
diveRsity-1.2.3/diveRsity/R/diveRsity_v1.2.3.R |only
diveRsity-1.2.3/diveRsity/inst |only
diveRsity-1.2.3/diveRsity/man/div.part.Rd | 9 +++++++--
7 files changed, 22 insertions(+), 13 deletions(-)
Title: Mapping global data, vector and raster.
Diff between rworldmap versions 1.01 dated 2012-10-03 and 1.02 dated 2012-10-05
Description: Enables mapping of country level and gridded user
datasets.
Author: Andy South, with contributions from Joe Scutt-Phillips, Barry
Rowlingson, Roger Bivand & Pru Foster
Maintainer: Andy South
ChangeLog | 10 ++++++----
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
R/rwmGetISO3.r | 19 +++++++++----------
R/zzz.r | 5 ++---
data/countrySynonyms.rda |binary
inst/doc/rworldmap.pdf |binary
inst/doc/rworldmapFAQ.pdf |binary
man/rworldmap-package.Rd | 4 ++--
9 files changed, 31 insertions(+), 31 deletions(-)
Title: A package for Graphical Markov Models
Diff between ggm versions 1.995-2 dated 2012-09-14 and 1.995-3 dated 2012-10-05
Description: Functions for analyzing and fitting Graphical Markov
models
Author: Giovanni M. Marchetti, Mathias Drton, Kayvan Sadeghi
Maintainer: Giovanni M. Marchetti
DESCRIPTION | 10 -
MD5 | 26 ++--
R/functions.R | 293 ++++++++++++++++++++++++----------------------
ggm-Ex.R | 15 +-
inst/doc/mixed-graphs.pdf |binary
man/DAG.Rd | 2
man/DG.Rd | 2
man/MRG.Rd | 212 ++++++++++++++++-----------------
man/derived.Rd | 6
man/fitDagLatent.Rd | 2
man/makeMG.Rd | 6
man/plotGraph.Rd | 27 +---
man/shipley.test.Rd | 3
man/stress.Rd | 4
14 files changed, 312 insertions(+), 296 deletions(-)
Title: TCC: tag count comparison package
Diff between TCC versions 0.3 dated 2012-07-26 and 0.4 dated 2012-10-05
Description: This package provides normalization method of tag count
data by TMM-bayseq-TMM pipeline. Expected application includes
RNA-seq, SAGE, ChIP-seq and a like.
Author: Koji Kadota, Tomoaki Nishiyama, Kentaro Shimizu
Maintainer: Tomoaki Nishiyama
DESCRIPTION | 8 ++++----
MD5 | 14 ++++++++------
NAMESPACE | 1 -
R/MAplot.R | 9 ++-------
R/TbT.R | 19 +++++++++++++------
data |only
inst/README | 3 ++-
man/arab.Rd |only
man/exactTestafterTbT.Rd | 5 +++--
9 files changed, 32 insertions(+), 27 deletions(-)
Title: Number-theoretic Functions
Diff between numbers versions 0.2-5 dated 2012-09-26 and 0.3-1 dated 2012-10-05
Description: Provides some number-theoretic functions for R.
Author: Hans W Borchers
Maintainer: HwB
DESCRIPTION | 12 ++++-----
MD5 | 38 ++++++++++++++++++++---------
NAMESPACE | 6 +++-
NEWS |only
R/chinese.R |only
R/egyptian.R |only
R/fibonacci.R | 28 +++++++++++++++++++++
R/gcd.R | 60 +++++++++++++++++++++++++++++++++++++++++++++--
R/is.R | 8 +-----
R/modular.R | 54 ++++++++++++++++++++++++++++++++++--------
R/primes.R | 4 +--
man/GCD.Rd | 18 +++++++++++---
man/agm.Rd | 1
man/chinese.Rd |only
man/div.Rd |only
man/egyptian_complete.Rd |only
man/egyptian_methods.Rd |only
man/factorize.Rd | 3 --
man/fibonacci.Rd | 2 -
man/mod.Rd |only
man/nextprime.Rd |only
man/numbers-package.Rd |only
man/previousPrime.Rd |only
man/primes.Rd | 19 --------------
man/rem.Rd |only
man/twinprimes.Rd |only
man/zeck.Rd |only
27 files changed, 188 insertions(+), 65 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-06 0.5
2011-10-25 0.4
2011-10-17 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-09-23 1.3
2011-06-01 1.2
2011-03-27 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-26 0.1-4
2010-09-24 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-26 2.0.1
2011-01-31 1.0.3
2009-01-09 1.0.1
2007-12-12 1.0.0
Title: R interface to the PostgreSQL database system
Diff between RPostgreSQL versions 0.3-2 dated 2012-01-29 and 0.3-3 dated 2012-10-05
Description: Database interface and PostgreSQL driver for R This
package provides a Database Interface (DBI) compliant driver
for R to access PostgreSQL database systems.
In order to build and install this package from source, PostgreSQL
itself must be present your system to provide PostgreSQL
functionality via its libraries and header files. These files
are provided as postgresql-devel package under some Linux
distributions.
On Microsoft Windows system the attached libpq library source will be
used.
A wiki and issue tracking system for the package are available at
Google Code at https://code.google.com/p/rpostgresql/ .
Author: Joe Conway, Dirk Eddelbuettel, Tomoaki Nishiyama, Sameer Kumar
Prayaga (during 2008), Neil Tiffin
Maintainer: Tomoaki Nishiyama
ChangeLog | 103 +++++++++++++++++++++--------
DESCRIPTION | 10 +-
LICENSE | 12 ++-
MD5 | 44 ++++++++----
R/PostgreSQLSupport.R | 41 +++--------
configure | 2
configure.in | 2
inst/NEWS | 8 ++
inst/TODO | 8 --
inst/doc/DBI.pdf |binary
man/dbCommit-methods.Rd | 4 -
src/RS-DBI.c | 91 +++++---------------------
src/RS-DBI.h | 4 -
src/RS-PostgreSQL.c | 121 ++++-------------------------------
src/RS-pgsql-getResult.c | 23 ++++--
tests/datetimestampwrite.Rout.save |only
tests/dbColumnInfo.R | 2
tests/dbColumnInfo.Rout.save | 11 ++-
tests/dbExistsqc.Rout.save |only
tests/dbListFields.Rout.save |only
tests/dbTransactionTests.R |only
tests/dbTransactionTests.Rout.save |only
tests/dbWriteTableFailTest.Rout.save |only
tests/dbWriteTableSchema.Rout.save |only
tests/dbWriteTabletypes.Rout.save |only
tests/openSendQuery.R |only
tests/openSendQuery.Rout.save |only
tests/unknowntype.R |only
tests/unknowntype.Rout.save |only
29 files changed, 209 insertions(+), 277 deletions(-)