Title: Trajectory miner: a toolbox for exploring and rendering sequence
data
Diff between TraMineR versions 1.8-2 dated 2012-06-04 and 1.8-3 dated 2012-10-18
Description: This package is a toolbox for sequence manipulation,
description, rendering and more generally the mining of
sequence data in the field of social sciences. Though it is
primarily intended for analyzing state or event sequences that
describe life courses such as family formation histories or
professional careers its features also apply to many other
kinds of categorical sequence data. It accepts many different
sequence representations as input and provides tools for
translating sequences from one format to another. It offers
several statistical functions for describing and rendering
sequences, for computing distances between sequences with
different metrics among which optimal matching, the longest
common prefix and the longest common subsequence, and simple
functions for extracting the most frequent subsequences and
identifying the most discriminating ones among them. A user's
guide can be found on TraMineR's web page.
Author: Alexis Gabadinho
Maintainer: Gilbert Ritschard
DESCRIPTION | 8
MD5 | 53 ++--
NAMESPACE | 7
NEWS | 38 ++-
R/TraMineR-group.R | 71 +++--
R/TraMineR-legend.R | 40 +--
R/plot.stslist.R | 1
R/plot.stslist.modst.R | 99 ++++----
R/seqdef.R | 16 +
R/seqdistmc.R | 416 +++++++++++++++++------------------
R/seqdss.R | 15 -
R/seqe.R | 18 +
R/seqe2tse.R |only
R/seqecmpgroup.R | 6
R/seqmodst.R | 17 -
R/seqpcplot.R |only
R/seqplot.R | 71 +++--
data/ex1.rda |binary
data/ex2.rda |binary
data/famform.rda |binary
inst/CITATION | 53 ++--
inst/doc/TraMineR-state-sequence.pdf |binary
man/TraMineR-package.Rd | 39 +--
man/plot.subseqelist.Rd | 2
man/seqe.Rd | 7
man/seqformat.Rd | 113 +++------
man/seqpcplot.Rd |only
man/seqplot.Rd | 15 +
src/tmrsequence.cpp | 52 ++++
29 files changed, 651 insertions(+), 506 deletions(-)
Title: seawater carbonate chemistry with R
Diff between seacarb versions 2.4.4 dated 2012-06-29 and 2.4.5 dated 2012-10-18
Description: Calculates parameters of the seawater carbonate system.
Code and/or corrections were contributed by Andreas Andersson,
Jean-Marie Epitalon, Bernard Gentili, Andreas Hofmann, Jim Orr,
Aurelien Proye and Karline Soetaert
Author: Heloise Lavigne, Jean-Pierre Gattuso
Maintainer: Jean-Pierre Gattuso
seacarb-2.4.4/seacarb/man/seacarb_test.Rd |only
seacarb-2.4.5/seacarb/ChangeLog | 483 +++++++++++++++---------------
seacarb-2.4.5/seacarb/DESCRIPTION | 8
seacarb-2.4.5/seacarb/MD5 | 7
seacarb-2.4.5/seacarb/man/carb.Rd | 414 ++++++++++++-------------
5 files changed, 458 insertions(+), 454 deletions(-)
Title: Time series management, analysis and interpolation for
hydrological modelling
Diff between hydroTSM versions 0.3-5 dated 2012-07-04 and 0.3-6 dated 2012-10-18
Description: S3 functions for management, analysis, interpolation and
plotting of time series used in hydrology and related
environmental sciences. In particular, this package is highly
oriented to hydrological modelling tasks. The focus of this
package has been put in providing a collection of tools useful
for the daily work of hydrologists (although an effort was made
to optimise each function as much as possible, functionality
has had priority over speed). Bugs / comments / questions /
collaboration of any kind are very welcomed, and in particular,
datasets that can be included in this package for academic
purposes.
Author: Mauricio Zambrano-Bigiarini [aut, cre]
Maintainer: Mauricio Zambrano-Bigiarini
DESCRIPTION | 10
MD5 | 28 -
NEWS | 25 +
R/fdc.R | 792 ++++++++++++++++++++---------------------
R/hydrokrige.R | 91 ++--
R/izoo2rzoo.R | 149 ++++---
R/sfreq.R | 33 -
R/sname2plot.R | 36 +
R/sname2ts.R | 27 -
R/vector2zoo.R | 66 +--
inst/doc/hydroTSM_Vignette.pdf |binary
man/hydroTSM-package.Rd | 10
man/hydrokrige.Rd | 4
man/izoo2rzoo.Rd | 63 ++-
man/vector2zoo.Rd | 29 +
15 files changed, 741 insertions(+), 622 deletions(-)
Title: Selective phenotyping for experimental crosses
Diff between spclust versions 1.0 dated 2012-06-06 and 1.2 dated 2012-10-18
Description: Selection of subsets of experimental crosses in order to
maximize genetic diversity
Author: Emma Huang
Maintainer: Emma Huang
spclust-1.0/spclust/R/spclust2.R |only
spclust-1.0/spclust/man/spclust1-all.Rd |only
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spclust-1.2/spclust/DESCRIPTION | 12
spclust-1.2/spclust/MD5 | 23 -
spclust-1.2/spclust/NAMESPACE | 7
spclust-1.2/spclust/R/NAM2cross.R |only
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spclust-1.2/spclust/R/plclust_in_colour.R | 2
spclust-1.2/spclust/R/spclust.R | 362 ++++++++++++++++++-------
spclust-1.2/spclust/R/spdist.R | 30 +-
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spclust-1.2/spclust/man/generateNAMpedigree.Rd |only
spclust-1.2/spclust/man/spclust-all.Rd |only
spclust-1.2/spclust/man/spdist.Rd | 7
18 files changed, 330 insertions(+), 113 deletions(-)
Title: Shape Analysis of Outlines
Diff between Momocs versions 0.1-03 dated 2012-09-04 and 0.2-01 dated 2012-10-18
Description: Momocs is intended to ease and popularize shape analysis
of outlines (especially using elliptical Fourier analysis). It
mostly hinges on the functions developed in Morphometrics with
R (Claude, 2008). From outline extraction of images and
elliptical Fourier calculation to multivariate analysis and the
visualization of transformations within the morphological
space, Momocs provides a complete and convenient toolkit to
specialists within every field that are, or may be, interested
in morphological comparisons of outlines.
Author: Vincent Bonhomme, Sandrine Picq, Julien Claude
Maintainer: Vincent Bonhomme
Momocs-0.1-03/Momocs/R/Nef.R |only
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Momocs-0.2-01/Momocs/ChangeLog | 83 +
Momocs-0.2-01/Momocs/DESCRIPTION | 13
Momocs-0.2-01/Momocs/MD5 | 149 +-
Momocs-0.2-01/Momocs/Momocs.Rproj | 2
Momocs-0.2-01/Momocs/NAMESPACE | 58 -
Momocs-0.2-01/Momocs/R/Coe.R |only
Momocs-0.2-01/Momocs/R/Coo.R | 721 +++++++++---
Momocs-0.2-01/Momocs/R/global.R | 1064 +++++++++++++++----
Momocs-0.2-01/Momocs/data/bot.rda |binary
Momocs-0.2-01/Momocs/data/hearts.rda |binary
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140 files changed, 1645 insertions(+), 551 deletions(-)
Title: Modern measures of population differentiation
Diff between mmod versions 1.0 dated 2012-08-11 and 1.01 dated 2012-10-18
Description: mmod provides functions for measuring population
divergence from genotypic data
Author: David Winter
Maintainer: David Winter
DESCRIPTION | 6 +-
MD5 | 93 +++++++++++++++++++++++++++++++------
NEWS | 33 +++++++------
R/Gst_Nei.R | 4 -
R/Phi_st_Meirmans.R | 2
R/dist.codom.R | 35 +++++--------
R/pairwise_D.R | 2
R/pairwise_Gst_Hedrick.R | 2
R/pairwise_Gst_Nei.R | 2
R/rgenotypes.R | 4 -
README.md | 9 ++-
inst/doc/D_Jost.html |only
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inst/staticdocs |only
man/Phi_st_Meirmans.Rd | 6 +-
man/dist.codom.Rd | 3 -
man/rgenotypes.Rd | 4 -
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31 files changed, 135 insertions(+), 70 deletions(-)
Title: Start the detrendeR Graphical User Interface (GUI)
Diff between detrendeR versions 1.0.2 dated 2012-03-30 and 1.0.3 dated 2012-10-18
Description: Simple GUI to perform some standard tree-ring analyses.
Author: Filipe Campelo
Maintainer: Filipe Campelo
DESCRIPTION | 10 +-
MD5 | 15 ++--
R/CodeR.r |only
R/DetrendeR.R | 158 ++++++++++++++++++--------------------------
R/TrwLessThan.r | 108 +++++++++++++++---------------
R/detrendeR-internal.R | 112 +++++++++++++++++++++++++++++--
R/interactivedetrending_1.R | 26 ++++++-
man/detrendeR-package.Rd | 2
man/detrender.Rd | 8 +-
9 files changed, 273 insertions(+), 166 deletions(-)
Title: Karl Broman's R code
Diff between broman versions 0.38-2 dated 2012-10-15 and 0.39-1 dated 2012-10-18
Description: Miscellaneous R functions
Author: Karl W Broman
Maintainer: Karl W Broman
DESCRIPTION | 10 +++++-----
MD5 | 4 ++--
inst/STATUS.txt | 6 ++++++
3 files changed, 13 insertions(+), 7 deletions(-)
Title: SICM pipette tip geometry estimation
Diff between breakage versions 1.0 dated 2012-08-17 and 1.0-1 dated 2012-10-18
Description: Estimates geometry of SICM pipette tips by fitting a
physical model to recorded breakage-current data.
Author: Matthew Caldwell
Maintainer: Matthew Caldwell
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
man/break.clust.Rd | 4 ++--
man/break.data.Rd | 4 ++--
man/breakage-package.Rd | 6 +++---
man/breakage.plot.Rd | 4 ++--
man/err.breakage.Rd | 6 +++---
man/fit.breakage.Rd | 6 +++---
man/fit.sensitivity.plot.Rd | 2 +-
man/resist.access.Rd | 4 ++--
man/resist.breakage.Rd | 8 ++++----
man/resist.cone.Rd | 4 ++--
man/resist.total.Rd | 4 ++--
13 files changed, 42 insertions(+), 42 deletions(-)
Title: Estimation techniques for the reliability estimate: Maximized
Lambda4.
Diff between Lambda4 versions 2.1 dated 2012-09-21 and 2.2 dated 2012-10-18
Description: Currently the package includes 5 functions. Three of
which are different methods of calculating Guttman's lambda4
coefficient. One allows the user to select the item splits.
The remaining two are new methods to calculate reliability.
Both are based on a combination of Cronbach's alpha and
Maximal-type reliability coefficients but use different
maximization procedures. Lastly, lambda3 (Cronbach's alpha) is
included for convenience.
Author:
Maintainer:
DESCRIPTION | 17 ++++++------
MD5 | 26 ++++++++++++-------
R/cov.lambda4.R | 25 +++++++++++-------
R/lambda3.R |only
R/quant.lambda4.R | 15 +++++------
R/user.lambda4.R | 45 ++++++++++++++++++++++++++++-----
data |only
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man/bin.combs.Rd | 35 +++++++++----------------
man/cov.lambda4.Rd | 53 ++++++++++++++++++++-------------------
man/lambda3.Rd |only
man/quant.lambda4.Rd | 57 ++++++++++++++++++------------------------
man/user.lambda4.Rd | 66 ++++++++++++++++++++++++-------------------------
16 files changed, 205 insertions(+), 167 deletions(-)