Package rgdal updated to version 0.7-20 with previous version 0.7-19 dated 2012-09-25

Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.0) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Timothy H. Keitt , Roger Bivand , Edzer Pebesma , Barry Rowlingson
Maintainer: Roger Bivand

Diff between rgdal versions 0.7-19 dated 2012-09-25 and 0.7-20 dated 2012-10-20

 ChangeLog          | 1213 +----------------------------------------------------
 DESCRIPTION        |    8 
 MD5                |   30 -
 NAMESPACE          |    1 
 R/gdal.R           |   40 +
 R/ogr_sp.R         |   19 
 R/sp_gdal.R        |   53 +-
 inst/ChangeLog     | 1213 +----------------------------------------------------
 man/projInfo.Rd    |    1 
 man/readGDAL.Rd    |    4 
 man/writeOGR.Rd    |    2 
 src/init.c         |    2 
 src/local_stubs.c  |    2 
 src/ogr_geom.cpp   |   30 -
 src/ogr_polygons.c |   24 -
 src/rgdal.h        |    6 
 16 files changed, 229 insertions(+), 2419 deletions(-)

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Package googleVis updated to version 0.3.0 with previous version 0.2.17 dated 2012-08-04

Title: Interface between R and the Google Chart Tools
Description: The googleVis package provides an interface between R and the Google Chart Tools, formerly know as Google Visualisation API. It allows users to create web pages with interactive charts based on R data frames, using the Google Chart Tools and to display them either via the local R HTTP help server or within their own sites, without uploading the data to Google. A modern browser with Internet connection is required and for some charts Flash. Please visit the project web site for more information and examples.
Author: Markus Gesmann, Diego de Castillo
Maintainer: Markus Gesmann

Diff between googleVis versions 0.2.17 dated 2012-08-04 and 0.3.0 dated 2012-10-20

 DESCRIPTION               |   25 +++++-----
 MD5                       |   48 +++++++++----------
 NAMESPACE                 |    5 --
 NEWS                      |   43 ++++++++++++++++-
 R/gvis.R                  |  111 +++++++++++++++++++++++++++++++---------------
 R/gvisBubbleChart.R       |    8 ---
 R/gvisMap.R               |    2 
 R/gvisMethods.R           |    4 -
 R/gvisMotionChart.R       |   40 +++++++++++++---
 R/zzz.R                   |    7 ++
 THANKS                    |   74 ++++++++++++++----------------
 demo/AnimatedGeoMap.R     |    4 +
 demo/WorldBank.R          |    3 -
 inst/doc/googleVis.Rnw    |   59 ++++++++++++------------
 inst/doc/googleVis.pdf    |binary
 man/createGoogleGadget.Rd |    2 
 man/googleVis-package.Rd  |   26 +++++-----
 man/gvisBubbleChart.Rd    |   28 +++++------
 man/gvisGeoChart.Rd       |   12 ++++
 man/gvisLineChart.Rd      |    3 -
 man/gvisMap.Rd            |    9 ++-
 man/gvisMethods.Rd        |    7 ++
 man/gvisMotionChart.Rd    |   34 ++++++++++++--
 vignettes/googleVis.Rnw   |   59 ++++++++++++------------
 vignettes/googleVis.bib   |   10 ++--
 25 files changed, 383 insertions(+), 240 deletions(-)

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New package MBI with initial version 1.0
Package: MBI
Type: Package
Title: (M)ultiple-site (B)iodiversity (I)ndices Calculator
Version: 1.0
Date: 2012-10-17
Author: Youhua Chen
Maintainer: Youhua Chen
Description: Over 20 multiple-site diversity indices can be calculated. Later versions will include phylogenetic diversity
License: GPL-2
Packaged: 2012-10-18 00:17:18 UTC; Owner
Repository: CRAN
Date/Publication: 2012-10-20 06:45:03

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Package HIBAG updated to version 0.9.3 with previous version 0.9.2 dated 2012-08-05

Title: HIBAG -- HLA Genotype Imputation with Attribute Bagging
Description: To impute HLA types from unphased SNP data using an attribute bagging method.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng

Diff between HIBAG versions 0.9.2 dated 2012-08-05 and 0.9.3 dated 2012-10-20

 DESCRIPTION                    |    8 -
 MD5                            |   29 ++-
 NEWS                           |   18 ++
 R/main.r                       |  307 ++++++++++++++++++++++++++++++++---------
 man/HIBAG-package.Rd           |    8 -
 man/hlaAlleleClass.Rd          |    1 
 man/hlaCheckSNPs.Rd            |    4 
 man/hlaGenoCombine.Rd          |   17 +-
 man/hlaGenoSwitchStrand.Rd     |    7 
 man/hlaParallelAttrBagging.Rd  |    6 
 man/hlaSNPID.Rd                |   13 +
 man/hlaUniqueAllele.Rd         |only
 man/predict.hlaAttrBagClass.Rd |   24 ++-
 src/LibHLA.cpp                 |   58 +++++--
 src/LibHLA.h                   |   25 ++-
 src/main.cpp                   |  289 ++++++++++++++++++++++++++------------
 16 files changed, 592 insertions(+), 222 deletions(-)

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Package ExomeDepth updated to version 0.9.2 with previous version 0.9.1 dated 2012-10-19

Title: Calls CNV from exome sequence data
Description: Calls copy number variants (CNVs) from targeted sequence data
Author: Vincent Plagnol
Maintainer: Vincent Plagnol

Diff between ExomeDepth versions 0.9.1 dated 2012-10-19 and 0.9.2 dated 2012-10-20

 DESCRIPTION                      |    6 ++--
 MD5                              |   10 +++----
 R/class_definition.R             |   54 +++++++++++++++++++--------------------
 R/optimize_reference_set.R       |    2 -
 inst/doc/ExomeDepth-vignette.Rnw |   11 +++++++
 inst/doc/ExomeDepth-vignette.pdf |binary
 6 files changed, 47 insertions(+), 36 deletions(-)

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