Title: Multidimensional Item Response Theory
Diff between mirt versions 0.4.0 dated 2012-09-22 and 0.4.1 dated 2012-10-23
Description: Analysis of dichotomous and polytomous response data using
latent trait models under the Item Response Theory paradigm.
Includes univariate and multivariate one-, two-, three-, and
four-parameter logistic models, graded response models, rating
scale graded response models, generalized partial credit
models, nominal models, multiple choice models, and
multivariate partially-compensatory models. These can be used
in an exploratory or confirmatory manner with optional user
defined linear constraints. Exploratory models can be estimated
via quadrature or stochastic methods, a generalized
confirmatory bi-factor analysis is included, and confirmatory
models can be fit with a Metropolis-Hastings Robbins-Monro
algorithm which can include polynomial or product constructed
latent traits. Additionally, multiple group analysis may be
performed for unidimensional or multidimensional item response
models for detecting differential item functioning.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers
mirt-0.4.0/mirt/R/EMstep.R |only
mirt-0.4.0/mirt/R/MHRM.R |only
mirt-0.4.1/mirt/DESCRIPTION | 40
mirt-0.4.1/mirt/MD5 | 131 -
mirt-0.4.1/mirt/NAMESPACE | 67
mirt-0.4.1/mirt/NEWS | 36
mirt-0.4.1/mirt/R/00-classes.R | 133 -
mirt-0.4.1/mirt/R/01-itemtypes.R | 146 -
mirt-0.4.1/mirt/R/02-item_methods.R | 2372 +++++++++++----------
mirt-0.4.1/mirt/R/03-estimation.R |only
mirt-0.4.1/mirt/R/Confirmatory-methods.R | 477 ++--
mirt-0.4.1/mirt/R/EMstep.group.R | 481 ++--
mirt-0.4.1/mirt/R/Exploratory-methods.R | 595 ++---
mirt-0.4.1/mirt/R/LoadPars.R | 787 +++---
mirt-0.4.1/mirt/R/MHRM.group.R | 590 ++---
mirt-0.4.1/mirt/R/MultipleGroup-methods.R | 208 -
mirt-0.4.1/mirt/R/PrepData.R | 320 +-
mirt-0.4.1/mirt/R/bfactor.R | 416 +--
mirt-0.4.1/mirt/R/calcLogLik.R | 299 +-
mirt-0.4.1/mirt/R/confmirt.R | 639 ++---
mirt-0.4.1/mirt/R/confmirt.model.R | 104
mirt-0.4.1/mirt/R/extract.item.R | 52
mirt-0.4.1/mirt/R/fscores.R | 429 ++-
mirt-0.4.1/mirt/R/itemfit.R | 265 +-
mirt-0.4.1/mirt/R/iteminfo.R | 64
mirt-0.4.1/mirt/R/itemplot.R | 328 +-
mirt-0.4.1/mirt/R/mirt-package.R | 160 -
mirt-0.4.1/mirt/R/mirt.R | 801 +++----
mirt-0.4.1/mirt/R/model.elements.R | 194 -
mirt-0.4.1/mirt/R/multipleGroup.R | 623 +----
mirt-0.4.1/mirt/R/personfit.R | 204 -
mirt-0.4.1/mirt/R/polymirt.R | 40
mirt-0.4.1/mirt/R/simdata.R | 348 +--
mirt-0.4.1/mirt/R/utils.R | 795 +++----
mirt-0.4.1/mirt/R/wald.R | 181 -
mirt-0.4.1/mirt/README.md | 47
mirt-0.4.1/mirt/inst/CITATION | 38
mirt-0.4.1/mirt/inst/doc |only
mirt-0.4.1/mirt/inst/tests/confmods/modelcombo | 6
mirt-0.4.1/mirt/inst/tests/confmods/modelquad | 4
mirt-0.4.1/mirt/inst/tests/test-bfactor.R | 160 -
mirt-0.4.1/mirt/inst/tests/test-confmirtOne.R | 51
mirt-0.4.1/mirt/inst/tests/test-confmirtTwo.R | 134 -
mirt-0.4.1/mirt/inst/tests/test-mirtOne.R | 98
mirt-0.4.1/mirt/inst/tests/test-mirtTwo.R | 73
mirt-0.4.1/mirt/inst/tests/test-multipleGroupOne.R | 83
mirt-0.4.1/mirt/inst/tests/test-multipleGroupTwo.R | 77
mirt-0.4.1/mirt/man/ConfirmatoryClass-class.Rd | 122 -
mirt-0.4.1/mirt/man/ExploratoryClass-class.Rd | 126 -
mirt-0.4.1/mirt/man/MultipleGroupClass-class.Rd | 124 -
mirt-0.4.1/mirt/man/bfactor.Rd | 457 +---
mirt-0.4.1/mirt/man/calcLogLik-methods.Rd | 94
mirt-0.4.1/mirt/man/confmirt.Rd | 754 +++---
mirt-0.4.1/mirt/man/confmirt.model.Rd | 114 -
mirt-0.4.1/mirt/man/extract.item.Rd | 56
mirt-0.4.1/mirt/man/fscores.Rd | 111
mirt-0.4.1/mirt/man/itemfit.Rd | 137 -
mirt-0.4.1/mirt/man/iteminfo.Rd | 66
mirt-0.4.1/mirt/man/itemplot.Rd | 98
mirt-0.4.1/mirt/man/mirt-package.Rd | 66
mirt-0.4.1/mirt/man/mirt.Rd | 950 ++++----
mirt-0.4.1/mirt/man/multipleGroup.Rd | 588 ++---
mirt-0.4.1/mirt/man/personfit.Rd | 113 -
mirt-0.4.1/mirt/man/polymirt.Rd | 54
mirt-0.4.1/mirt/man/simdata.Rd | 334 +-
mirt-0.4.1/mirt/man/wald.Rd | 125 -
mirt-0.4.1/mirt/src/Makevars.win | 8
mirt-0.4.1/mirt/src/dparsPoly.cpp | 11
68 files changed, 8894 insertions(+), 8710 deletions(-)
Title: Rainbow plots, bagplots and boxplots for functional data
Diff between rainbow versions 3.0 dated 2012-07-26 and 3.1 dated 2012-10-23
Description: Functions and datasets for functional data display and
outlier detection.
Author: Han Lin Shang and Rob J Hyndman
Maintainer: Han Lin Shang
rainbow-3.0/rainbow/CHANGELOG |only
rainbow-3.1/rainbow/CHANGELOG.txt |only
rainbow-3.1/rainbow/DESCRIPTION | 9 ++++-----
rainbow-3.1/rainbow/MD5 | 15 ++++++++-------
rainbow-3.1/rainbow/R/depth.radius.R |only
rainbow-3.1/rainbow/R/fdepth.R | 13 +++++++++----
rainbow-3.1/rainbow/R/fhdr.R | 1 +
rainbow-3.1/rainbow/inst/doc/rainbow.pdf |binary
rainbow-3.1/rainbow/man/fdepth.Rd | 19 +++++++++++++++++--
rainbow-3.1/rainbow/man/foutliers.Rd | 4 ----
10 files changed, 39 insertions(+), 22 deletions(-)
Title: Mixtures of von Mises-Fisher Distributions
Diff between movMF versions 0.0-2 dated 2012-07-12 and 0.1-0 dated 2012-10-23
Description: Fit and simulate mixtures of von Mises-Fisher
distributions.
Author: Kurt Hornik and Bettina Grün
Maintainer: Kurt Hornik
movMF-0.0-2/movMF/NEWS |only
movMF-0.0-2/movMF/src/mygcf.c |only
movMF-0.1-0/movMF/DESCRIPTION | 7
movMF-0.1-0/movMF/MD5 | 20 +-
movMF-0.1-0/movMF/NAMESPACE | 2
movMF-0.1-0/movMF/R/movMF.R | 385 ++++++++++++++++++++++++++++++++---------
movMF-0.1-0/movMF/R/rmovMF.R | 5
movMF-0.1-0/movMF/inst |only
movMF-0.1-0/movMF/man/movMF.Rd | 10 -
movMF-0.1-0/movMF/src/init.c |only
movMF-0.1-0/movMF/src/movMF.h |only
movMF-0.1-0/movMF/vignettes |only
12 files changed, 337 insertions(+), 92 deletions(-)
Title: A package to estimate posterior probabilities and perform model
selection in change-point models using constrained HMM.
Diff between postCP versions 1.05 dated 2012-02-15 and 1.6.0 dated 2012-10-23
Description: The functions are used for change-point problems, after an
initial set of change-points within the data has already been
obtained. The function postCP obtains estimates of posterior
probabilities of change-point and hidden states for each
observation, and confidence intervals for the positions of the
change-point. The function postCPsample obtains random samples
of sets of change-points using the output of the postCP
function. Model selection may be performed using function
postCPmodelsel through criteria obtained from function
postCPcrit.
Author: Gregory Nuel and The Minh Luong
Maintainer: The Minh Luong
DESCRIPTION | 19 -
MD5 | 20 -
R/GreedySegmente.R |only
R/plot.postCP.r |only
R/postCP.modelsel.r |only
R/postCP.r | 469 ++++++++++++++++++++++++----
man/GreedySegmente.Rd |only
man/lesum.Rd |only
man/mleNB.Rd |only
man/plot.postCP.Rd |only
man/postCP.Rd | 118 ++++---
man/postCPcrit.Rd |only
man/postCPmodelsel.Rd |only
man/postCPsample.Rd | 34 +-
man/viterbi.Rd |only
src/postCP.cpp | 837 ++++++++++++++++++++++++++++++++++----------------
16 files changed, 1101 insertions(+), 396 deletions(-)
Title: Recursive Partitioning Based on Psychometric Models
Diff between psychotree versions 0.12-1 dated 2011-10-05 and 0.12-2 dated 2012-10-23
Description: Recursive partitioning based on psychometric models,
employing the general MOB algorithm (from package party) to
obtain Bradley-Terry trees and Rasch trees.
Author: Achim Zeileis [aut, cre], Carolin Strobl [aut], Florian
Wickelmaier [aut], Julia Kopf [aut]
Maintainer: Achim Zeileis
psychotree-0.12-1/psychotree/inst/doc/psychotree.bib |only
psychotree-0.12-2/psychotree/DESCRIPTION | 14 +++----
psychotree-0.12-2/psychotree/MD5 | 25 +++++++-------
psychotree-0.12-2/psychotree/NEWS | 11 ++++++
psychotree-0.12-2/psychotree/R/raschtree.R | 2 -
psychotree-0.12-2/psychotree/data/CEMSChoice.rda |binary
psychotree-0.12-2/psychotree/data/DIFSim.rda |binary
psychotree-0.12-2/psychotree/data/EuropeanValuesStudy.rda |binary
psychotree-0.12-2/psychotree/data/SPISA.rda |binary
psychotree-0.12-2/psychotree/data/Topmodel2007.rda |binary
psychotree-0.12-2/psychotree/inst/doc/raschtree.Rnw | 24 ++++++++-----
psychotree-0.12-2/psychotree/inst/doc/raschtree.pdf |binary
psychotree-0.12-2/psychotree/tests |only
psychotree-0.12-2/psychotree/vignettes |only
14 files changed, 49 insertions(+), 27 deletions(-)
Title: Infrastructure for Psychometric Modeling
Diff between psychotools versions 0.1-3 dated 2012-05-14 and 0.1-4 dated 2012-10-23
Description: Infrastructure for psychometric modeling such as data
classes (e.g., for paired comparisons) and basic model fitting
functions (e.g., for Rasch and Bradley-Terry models). Intended
especially as a common building block for fitting psychometric
mixture models in package "psychomix" and psychometric tree
models in package "psychotree".
Author: Achim Zeileis [aut, cre], Carolin Strobl [aut], Florian
Wickelmaier [aut]
Maintainer: Achim Zeileis
DESCRIPTION | 14 +--
MD5 | 18 ++-
NEWS | 8 +
data/FirstNames.rda |binary
data/GermanParties2009.rda |binary
data/SoundQuality.rda |binary
data/StereotypeThreat.rda |binary
data/VerbalAggression.rda |binary
data/YouthGratitude.rda |only
man/YouthGratitude.Rd |only
tests/Examples/psychotools-Ex.Rout.save | 146 +++++++++++++++++++++++++++++++-
11 files changed, 168 insertions(+), 18 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 1.0-9 dated 2012-09-05 and 1.0-10 dated 2012-10-23
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates
Maintainer: Martin Maechler
ChangeLog | 15 ++
DESCRIPTION | 9 -
MD5 | 88 ++++++-------
NAMESPACE | 3
R/AllGeneric.R | 11 -
R/Auxiliaries.R | 2
R/Csparse.R | 10 -
R/HBMM.R | 6
R/Matrix.R | 18 +-
R/Rsparse.R | 2
R/Tsparse.R | 4
R/diagMatrix.R | 39 +++---
R/dsCMatrix.R | 11 +
R/dtCMatrix.R | 2
R/sparseMatrix.R | 4
R/sparseVector.R | 82 ++++++++----
TODO | 3
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf |binary
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/po/de/LC_MESSAGES/Matrix.mo |binary
inst/po/de/LC_MESSAGES/R-Matrix.mo |binary
inst/po/en@quot/LC_MESSAGES/Matrix.mo |binary
inst/po/en@quot/LC_MESSAGES/R-Matrix.mo |binary
inst/po/pl/LC_MESSAGES/Matrix.mo |binary
inst/po/pl/LC_MESSAGES/R-Matrix.mo |binary
man/Diagonal.Rd | 13 +-
man/chol2inv-methods.Rd | 1
man/dsCMatrix-class.Rd | 1
man/image-methods.Rd | 3
man/sparseVector-class.Rd | 11 +
po/Matrix.pot | 40 +++---
po/R-Matrix.pot | 23 ++-
po/R-de.po | 208 +++++++++++++++++---------------
po/R-en@quot.po | 33 +++--
po/R-pl.po | 42 ++++--
po/de.po | 51 +++----
po/en@quot.po | 42 +++---
po/pl.po | 40 +++---
src/Mutils.c | 180 ++++++++++++++++++++++++++-
src/Mutils.h | 14 ++
src/init.c | 9 +
tests/indexing.Rout.save | 45 +++---
45 files changed, 698 insertions(+), 367 deletions(-)
Title: Inference for QTL Hotspots
Diff between qtlhot versions 0.6.6 dated 2012-10-02 and 0.6.7 dated 2012-10-23
Description: Functions to infer co-mapping trait hotspots and causal
models
Author: Elias Chaibub Neto
Maintainer: Brian S. Yandell
DESCRIPTION | 10 +--
MD5 | 29 +++++-----
NAMESPACE | 1
R/cmst.R | 103 +++++++++++++++++++++++++++++++++++--
R/highlod.R | 9 ---
R/hotperm.R | 4 +
R/multiple_testing_sim_functions.R |only
data/CMSTCross.RData |binary
inst/doc/cmst.pdf |binary
inst/doc/qtlhot.pdf |binary
man/CMSTtests.Rd | 1
man/GetCandReg.Rd | 18 ++----
man/PrecTpFpMatrix.Rd | 5 +
man/SimCrossCausal.Rd | 10 ++-
man/hotperm.Rd | 5 +
man/hotsize.Rd | 2
16 files changed, 152 insertions(+), 45 deletions(-)
Title: Support for Linear Models
Diff between lmSupport versions 1.05 dated 2011-04-01 and 1.07 dated 2012-10-23
Description: This package accompanies Markus Brauer and John Curtin's
two course graduate series in the General Linear Model (PSY
610/710).
Author: John Curtin
Maintainer: John Curtin
lmSupport-1.05/lmSupport/R/lm.clearAll.R |only
lmSupport-1.05/lmSupport/man/lm.clearAll.Rd |only
lmSupport-1.07/lmSupport/DESCRIPTION | 14 ++++----
lmSupport-1.07/lmSupport/MD5 |only
lmSupport-1.07/lmSupport/NAMESPACE | 2 -
lmSupport-1.07/lmSupport/R/lm.figSum.R | 18 ++++++++--
lmSupport-1.07/lmSupport/R/lm.returnDigits.R |only
lmSupport-1.07/lmSupport/R/lm.stripChart.R |only
lmSupport-1.07/lmSupport/R/lm.sumSquares.R | 43 +++++++++++++++++++-------
lmSupport-1.07/lmSupport/man/lm.figSum.Rd | 3 +
lmSupport-1.07/lmSupport/man/lm.stripChart.Rd |only
11 files changed, 56 insertions(+), 24 deletions(-)
Title: Deducer
Diff between Deducer versions 0.7-4 dated 2012-09-10 and 0.7-5 dated 2012-10-23
Description: An intuitive, cross-platform graphical data analysis
system. It uses menus and dialogs to guide the user efficiently
through the data manipulation and analysis process, and has an
excel like spreadsheet for easy data frame visualization and
editing. Deducer works best when used with the Java based R GUI
JGR, but the dialogs can be called from the command line.
Dialogs have also been integrated into the Windows Rgui.
Author: Ian Fellows with contributions from others (see documentation).
Maintainer: Ian Fellows
DESCRIPTION | 7 -
MD5 | 22 ++--
NEWS | 4
R/zzz.R | 46 ++++----
inst/java/deducer.jar |binary
javasrc/deducer/Deducer.java | 11 +-
javasrc/deducer/data/CopyPasteAdapter.java | 9 -
javasrc/deducer/data/RDataFrameModel.java | 142 +++++++++++++++-----------
javasrc/deducer/toolkit/DeducerPrefs.java | 2
javasrc/deducer/toolkit/VariableSelector.java | 4
javasrc/deducer/widgets/ComboBoxWidget.java | 6 -
javasrc/deducer/widgets/SimpleRDialog.java | 1
12 files changed, 142 insertions(+), 112 deletions(-)