Title: Non-linear mixed-effects modelling in nlme using differential
equations
Diff between nlmeODE versions 1.0 dated 2010-01-15 and 1.1 dated 2012-10-27
Description: This package combines the odesolve and nlme packages for
mixed-effects modelling using differential equations.
Author: Christoffer W. Tornoe
Maintainer: Christoffer W. Tornoe
nlmeODE-1.0/nlmeODE/R/zzz.R |only
nlmeODE-1.1/nlmeODE/DESCRIPTION | 10 +++---
nlmeODE-1.1/nlmeODE/MD5 |only
nlmeODE-1.1/nlmeODE/NAMESPACE |only
nlmeODE-1.1/nlmeODE/R/nlmeODE.R | 26 ++++++++--------
nlmeODE-1.1/nlmeODE/man/PKPDmodels.Rd | 54 ++++++++++++++++++++++------------
nlmeODE-1.1/nlmeODE/man/nlmeODE.Rd | 4 +-
7 files changed, 56 insertions(+), 38 deletions(-)
Title: Access to Amazon Mechanical Turk Requester API via R
Diff between MTurkR versions 0.1 dated 2012-09-19 and 0.2 dated 2012-10-27
Description: Provides access to the Amazon Mechanical Turk (MTurk)
Requester API via authenticated HTTP requests executed with the
RCurl package and a number of functions to translate API calls
into R data structures (using the XML package).
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper
MTurkR-0.1/MTurkR/R/GenerateQuestionForm.R |only
MTurkR-0.1/MTurkR/R/MTurkXMLToDataFrame.R |only
MTurkR-0.1/MTurkR/man/GenerateQuestionForm.Rd |only
MTurkR-0.1/MTurkR/man/MTurkXMLToDataFrame.Rd |only
MTurkR-0.2/MTurkR/DESCRIPTION | 22
MTurkR-0.2/MTurkR/MD5 | 199
MTurkR-0.2/MTurkR/NEWS |only
MTurkR-0.2/MTurkR/R/ApproveAllAssignments.R | 4
MTurkR-0.2/MTurkR/R/ApproveAssignment.R | 11
MTurkR-0.2/MTurkR/R/ApproveAssignments.R | 11
MTurkR-0.2/MTurkR/R/AssignQualification.R | 3
MTurkR-0.2/MTurkR/R/AssignQualifications.R | 3
MTurkR-0.2/MTurkR/R/AssignmentsToDataFrame.R | 10
MTurkR-0.2/MTurkR/R/GenerateAnswerKey.R | 72
MTurkR-0.2/MTurkR/R/GenerateHTMLQuestion.R | 13
MTurkR-0.2/MTurkR/R/GenerateReviewPolicy.R |only
MTurkR-0.2/MTurkR/R/GetAssignment.R | 14
MTurkR-0.2/MTurkR/R/GetAssignments.R | 14
MTurkR-0.2/MTurkR/R/GetBlockedWorkers.R | 8
MTurkR-0.2/MTurkR/R/GetBonuses.R | 4
MTurkR-0.2/MTurkR/R/GetFileUpload.R | 2
MTurkR-0.2/MTurkR/R/GetHITsForQualificationType.R | 6
MTurkR-0.2/MTurkR/R/GetQualificationRequests.R | 8
MTurkR-0.2/MTurkR/R/GetQualifications.R | 6
MTurkR-0.2/MTurkR/R/GetReviewResultsForHIT.R |only
MTurkR-0.2/MTurkR/R/GetReviewableHITs.R | 11
MTurkR-0.2/MTurkR/R/GrantBonus.R | 4
MTurkR-0.2/MTurkR/R/HITStatus.R | 57
MTurkR-0.2/MTurkR/R/ListQualificationTypes.R | 2
MTurkR-0.2/MTurkR/R/ListStatistics.R | 4
MTurkR-0.2/MTurkR/R/OpenDownloadPage.R |only
MTurkR-0.2/MTurkR/R/QualificationRequestsToDataFrame.R | 20
MTurkR-0.2/MTurkR/R/QualificationTypesToDataFrame.R | 2
MTurkR-0.2/MTurkR/R/RejectAssignment.R | 12
MTurkR-0.2/MTurkR/R/RejectAssignments.R | 12
MTurkR-0.2/MTurkR/R/RejectQualification.R | 10
MTurkR-0.2/MTurkR/R/RejectQualifications.R | 10
MTurkR-0.2/MTurkR/R/ReviewResultsToDataFrame.R |only
MTurkR-0.2/MTurkR/R/RevokeQualification.R | 53
MTurkR-0.2/MTurkR/R/RevokeQualifications.R | 53
MTurkR-0.2/MTurkR/R/SearchQualificationTypes.R | 9
MTurkR-0.2/MTurkR/R/SendTestEventNotification.R | 4
MTurkR-0.2/MTurkR/R/SetHITAsReviewing.R | 4
MTurkR-0.2/MTurkR/R/SufficientFunds.R | 10
MTurkR-0.2/MTurkR/R/UpdateQualificationType.R | 2
MTurkR-0.2/MTurkR/R/accountbalance.R | 8
MTurkR-0.2/MTurkR/R/accountbalance_1.R | 8
MTurkR-0.2/MTurkR/R/approve.R | 11
MTurkR-0.2/MTurkR/R/approveall.R | 4
MTurkR-0.2/MTurkR/R/assignment.R | 14
MTurkR-0.2/MTurkR/R/assignments.R | 14
MTurkR-0.2/MTurkR/R/assignqual.R | 3
MTurkR-0.2/MTurkR/R/authenticate.R | 3
MTurkR-0.2/MTurkR/R/blockedworkers.R | 8
MTurkR-0.2/MTurkR/R/bonus.R | 4
MTurkR-0.2/MTurkR/R/bonuses.R | 4
MTurkR-0.2/MTurkR/R/changehittype.R | 2
MTurkR-0.2/MTurkR/R/changehittype_1.R | 2
MTurkR-0.2/MTurkR/R/getbalance.R | 8
MTurkR-0.2/MTurkR/R/gethit.R | 17
MTurkR-0.2/MTurkR/R/gethit_1.R | 17
MTurkR-0.2/MTurkR/R/gethitsbyqual.R | 6
MTurkR-0.2/MTurkR/R/getquals.R | 6
MTurkR-0.2/MTurkR/R/geturls.R | 2
MTurkR-0.2/MTurkR/R/hit.R | 17
MTurkR-0.2/MTurkR/R/mturkr.wizard.R | 4623 ++++++++++++++---
MTurkR-0.2/MTurkR/R/mturkr.wizard_1.R | 4623 ++++++++++++++---
MTurkR-0.2/MTurkR/R/notificationtest.R | 4
MTurkR-0.2/MTurkR/R/paybonus.R | 4
MTurkR-0.2/MTurkR/R/qualrequests.R | 8
MTurkR-0.2/MTurkR/R/reject.R | 12
MTurkR-0.2/MTurkR/R/rejectrequest.R | 10
MTurkR-0.2/MTurkR/R/request.R | 19
MTurkR-0.2/MTurkR/R/reviewable.R | 11
MTurkR-0.2/MTurkR/R/reviewing.R | 4
MTurkR-0.2/MTurkR/R/reviewresults.R |only
MTurkR-0.2/MTurkR/R/revokequal.R | 53
MTurkR-0.2/MTurkR/R/searchhits.R | 11
MTurkR-0.2/MTurkR/R/searchhits_1.R | 11
MTurkR-0.2/MTurkR/R/searchquals.R | 9
MTurkR-0.2/MTurkR/R/status.R | 57
MTurkR-0.2/MTurkR/R/updatequal.R | 2
MTurkR-0.2/MTurkR/R/wizard.simple.R |only
MTurkR-0.2/MTurkR/inst |only
MTurkR-0.2/MTurkR/man/AccountBalance.Rd | 2
MTurkR-0.2/MTurkR/man/ApproveAssignment.Rd | 4
MTurkR-0.2/MTurkR/man/CreateQualificationType.Rd | 6
MTurkR-0.2/MTurkR/man/GenerateAnswerKey.Rd | 39
MTurkR-0.2/MTurkR/man/GenerateHTMLQuestion.Rd | 7
MTurkR-0.2/MTurkR/man/GenerateReviewPolicy.Rd |only
MTurkR-0.2/MTurkR/man/GetAssignment.Rd | 8
MTurkR-0.2/MTurkR/man/GetBonuses.Rd | 2
MTurkR-0.2/MTurkR/man/GetHITsForQualificationType.Rd | 2
MTurkR-0.2/MTurkR/man/GetQualificationRequests.Rd | 6
MTurkR-0.2/MTurkR/man/GetQualifications.Rd | 2
MTurkR-0.2/MTurkR/man/GetReviewResultsForHIT.Rd |only
MTurkR-0.2/MTurkR/man/GetReviewableHITs.Rd | 10
MTurkR-0.2/MTurkR/man/MTurkR-package.Rd | 8
MTurkR-0.2/MTurkR/man/MTurkR.Wizard.Rd | 17
MTurkR-0.2/MTurkR/man/Miscellaneous.Rd | 10
MTurkR-0.2/MTurkR/man/RejectQualification.Rd | 4
MTurkR-0.2/MTurkR/man/RevokeQualification.Rd | 10
MTurkR-0.2/MTurkR/man/SearchHITs.Rd | 8
MTurkR-0.2/MTurkR/man/SearchQualificationTypes.Rd | 6
MTurkR-0.2/MTurkR/man/SendTestEventNotification.Rd | 2
MTurkR-0.2/MTurkR/man/XMLToDataFrame.Rd |only
MTurkR-0.2/MTurkR/man/authenticate.Rd | 2
MTurkR-0.2/MTurkR/man/readlogfile.Rd | 2
108 files changed, 8846 insertions(+), 1619 deletions(-)
Title: Likelihood inference in meta-analysis and meta-regression
models.
Diff between metaLik versions 0.31 dated 2012-08-07 and 0.32.0 dated 2012-10-27
Description: first- and higher-order likelihood inference in
meta-analysis and meta-regression models.
Author: Annamaria Guolo and Cristiano Varin
Maintainer: Cristiano Varin
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/metaLik.R | 2 --
3 files changed, 5 insertions(+), 7 deletions(-)
Title: Plot Conics
Diff between conics versions 0.1 dated 2012-10-23 and 0.2 dated 2012-10-27
Description: plot conics (ellipses, hyperbolas, parabolas)
Author: Bernard Desgraupes (University of Paris Ouest - Lab Modal'X)
Maintainer: Bernard Desgraupes
DESCRIPTION | 10 ++++-----
MD5 | 18 ++++++++--------
R/main.R | 52 ++++++++++++++++++++++++++++++++-----------------
inst/doc/conics.pdf |binary
man/conicAsymptotes.Rd | 2 -
man/conicAxes.Rd | 2 -
man/conicCenter.Rd | 2 -
man/conicMatrix.Rd | 2 -
man/conicPlot.Rd | 6 ++---
man/conics-package.Rd | 6 ++---
10 files changed, 58 insertions(+), 42 deletions(-)
Title: SIMulated Structural Equation Modeling.
Diff between simsem versions 0.3-12 dated 2012-10-16 and 0.4-1 dated 2012-10-27
Description: This package can be used to generate data using the
structural equation modeling framework. This package is
tailored to use those simulated data for various purposes, such
as model fit evaluation, power analysis, or missing data
handling and planning.
Author: Sunthud Pornprasertmanit
Maintainer: Sunthud Pornprasertmanit
DESCRIPTION | 8
MD5 | 57 ++---
NAMESPACE | 5
R/AllClass.R | 4
R/AllGenerics.R | 12 -
R/analyze.R | 28 +-
R/drawParam.R | 403 +++++++++++++++++++++++++++++++++++----
R/generate.R | 4
R/getPowerFit-methods.R | 219 ++++++++++-----------
R/getPowerFitNested-methods.R | 32 ++-
R/getPowerFitNonNested-methods.R | 32 ++-
R/imposeMissing.R | 164 ++++++++++++++-
R/model.R | 156 ++++++++++++---
R/sim.R | 227 +++++++++++++++++++--
R/summary-methods.R | 4
R/summarySimResult.R | 17 +
man/SimResult-class.Rd | 3
man/SimSem-class.Rd | 1
man/draw.Rd | 56 +++++
man/estmodel.Rd | 21 +-
man/generate.Rd | 10
man/getPowerFit.Rd | 61 +++--
man/getPowerFitNested.Rd | 53 +++--
man/getPowerFitNonNested.Rd | 53 +++--
man/imposeMissing.Rd | 2
man/miss.Rd | 18 +
man/model.Rd | 66 ++++++
man/plotLogitMiss.Rd |only
man/sim.Rd | 5
man/summaryParam.Rd | 5
30 files changed, 1354 insertions(+), 372 deletions(-)
Title: Irreproducible discovery rate
Diff between idr versions 1.1 dated 2011-07-23 and 1.1.1 dated 2012-10-27
Description: This is a package for estimating the copula mixture model
and plotting correspondence curves in "Measuring
reproducibility of high-throughput experiments" (2011), Annals
of Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown,
Huang, and Bickel
Author: Qunhua Li
Maintainer: Qunhua Li
idr-1.1.1/idr/DESCRIPTION | 11 ++++++-----
idr-1.1.1/idr/MD5 |only
idr-1.1.1/idr/NAMESPACE |only
idr-1.1.1/idr/R/all.R |only
idr-1.1.1/idr/R/est.IDR.R | 2 +-
idr-1.1.1/idr/R/select.IDR.R |only
idr-1.1.1/idr/man/comp.uri.Rd | 5 +++--
idr-1.1.1/idr/man/d.binormal.Rd | 3 ++-
idr-1.1.1/idr/man/e.step.2normal.Rd | 5 +++--
idr-1.1.1/idr/man/est.IDR.Rd | 12 ++++++++----
idr-1.1.1/idr/man/get.correspondence.Rd | 16 +++++++++-------
idr-1.1.1/idr/man/get.pseudo.mix.Rd | 4 ++--
idr-1.1.1/idr/man/get.uri.2d.Rd | 4 ++--
idr-1.1.1/idr/man/idr-package.Rd | 16 ++++++++--------
idr-1.1.1/idr/man/loglik.2binormal.Rd | 4 ++--
idr-1.1.1/idr/man/m.step.2normal.Rd | 4 ++--
idr-1.1.1/idr/man/select.IDR.Rd |only
idr-1.1.1/idr/man/simu.idr.Rd | 4 ++--
idr-1.1/idr/R/idr-internal.R |only
19 files changed, 50 insertions(+), 40 deletions(-)
Title: Multivariate Dependence with Copulas
Diff between copula versions 0.999-2 dated 2012-10-25 and 0.999-3 dated 2012-10-27
Description: Classes (S4) of commonly used elliptical, Archimedean,
extreme value and some more copula families. Methods for
density, distribution, random number generation, bivariate
dependence measures, perspective and contour plots. Fitting
copula models including variance estimates. Independence and
serial (univariate and multivariate) independence tests, and
other copula related tests. Goodness-of-fit tests for copulas
based on multipliers, the parametric bootstrap with several
transformation options. Merged former package 'nacopula' for
nested Archimedean copulas: Efficient sampling algorithms,
various estimators, goodness-of-fit tests and related tools and
special functions.
Author: Marius Hofert
Maintainer: Martin Maechler
DESCRIPTION | 10 +++++-----
MD5 | 18 ++++++++++--------
R/fitCopula.R | 10 ++++++++--
R/special-func.R | 2 +-
demo/00Index | 29 +++++++++++++++--------------
demo/AC-Liouville-demo.R |only
inst/Rsource/AC-Liouville.R |only
inst/doc/Frank-Rmpfr.pdf |binary
inst/doc/nacopula-pkg.pdf |binary
man/archmCopula.Rd | 6 +++---
man/fitCopula.Rd | 10 +++++-----
11 files changed, 47 insertions(+), 38 deletions(-)