Title: Pedigree functions
Diff between kinship2 versions 1.3.3 dated 2011-12-05 and 1.3.7 dated 2012-10-31
Description: Routines to handle family data with a pedigree object. The
initial purpose was to create correlation structures that
describe family relationships such as kinship and
identity-by-descent, which can be used to model family data in
mixed effects models, such as in the coxme function. Also
includes a tool for pedigree drawing which is focused on
producing compact layouts without intervention. Recent
additions include utilities to trim the pedigree object with
various criteria.
Author: Terry Therneau, Elizabeth Atkinson, Jason Sinnwell, Martha
Matsumoto, Daniel Schaid, Shannon McDonnell
Maintainer: Jason Sinnwell
DESCRIPTION | 27 ++++----
MD5 | 53 +++++++++-------
NAMESPACE | 1
R/besthint.R | 2
R/ibdMatrix.R |only
R/kinship.R | 57 ++++++++++++++++--
R/makekinship.R | 2
inst/NEWS.Rd | 28 ++++++++
inst/doc/pedigree.pdf |binary
man/ibdMatrix.Rd |only
man/kinship.Rd | 17 +++--
noweb/all.aux |only
noweb/all.log |only
noweb/all.nw | 100 +++++++++++++++++++++++++++++---
noweb/all.pdf |only
noweb/all.tex |only
noweb/all.toc |only
noweb/kinship.Rnw | 100 +++++++++++++++++++++++++++++---
tests/failure.Rout.save | 14 +---
tests/kin1.R | 12 +++
tests/kin1.Rout.save | 31 ++++++---
tests/makefam.Rout.save | 14 +---
tests/monozygote.R |only
tests/monozygote.Rout.save |only
tests/subscript.Rout.save | 14 +---
tests/test.pedigree.legend.R | 1
tests/test.pedigree.legend.Rout.save | 15 +---
tests/test.pedigree.shrink.Rout.save | 14 +---
tests/test.pedigree.trim.Rout.save | 14 +---
tests/test.pedigree.unrelated.Rout.save | 14 +---
tests/twin.R | 43 ++++++++++++-
tests/twin.Rout.save | 76 ++++++++++++++++++++----
32 files changed, 490 insertions(+), 159 deletions(-)
Title: Delayed-Data Packages
Diff between g.data versions 2.0 dated 2009-01-13 and 2.2 dated 2012-10-31
Description: Create and maintain delayed-data packages (ddp's). Data
stored in a ddp are available on demand, but do not take up
memory until requested. You attach a ddp with g.data.attach(),
then read from it and assign to it in a manner similar to
S-PLUS, except that you must run g.data.save() to actually
commit to disk.
Author: David Brahm
Maintainer: David Brahm
g.data-2.0/g.data/R/g.data.upgrade.R |only
g.data-2.0/g.data/man/g.data.upgrade.Rd |only
g.data-2.2/g.data/ChangeLog | 8 ++++++
g.data-2.2/g.data/DESCRIPTION | 19 +++++++++-------
g.data-2.2/g.data/MD5 |only
g.data-2.2/g.data/NAMESPACE |only
g.data-2.2/g.data/R/g.data.attach.R |only
g.data-2.2/g.data/R/g.data.get.R |only
g.data-2.2/g.data/R/g.data.mash.R |only
g.data-2.2/g.data/R/g.data.put.R |only
g.data-2.2/g.data/R/g.data.save.R | 25 ---------------------
g.data-2.2/g.data/R/g.data.unmash.R |only
g.data-2.2/g.data/inst |only
g.data-2.2/g.data/man/g.data.save.Rd | 38 +++++++++++---------------------
14 files changed, 33 insertions(+), 57 deletions(-)
Title: Evaluates complex erf, erfc, Faddeeva, and density of sum of
Gaussian and Student's t
Diff between NORMT3 versions 1.0-2 dated 2010-03-17 and 1.0-3 dated 2012-10-31
Description: Evaluates the probability density function of the sum of
the Gaussian and Student's t density on 3 degrees of freedom.
Evaluates the p.d.f. of the sphered Student's t density
function. Also evaluates the erf, and erfc functions on
complex-valued arguments. Thanks to Krishna Myneni the function
is calculates the Faddeeva function also!
Author: Guy Nason
Maintainer: Guy Nason
NORMT3-1.0-2/NORMT3/R/firstlib.R |only
NORMT3-1.0-3/NORMT3/DESCRIPTION | 10 +++++-----
NORMT3-1.0-3/NORMT3/MD5 |only
NORMT3-1.0-3/NORMT3/NAMESPACE |only
NORMT3-1.0-3/NORMT3/R/erfc.R | 2 +-
NORMT3-1.0-3/NORMT3/R/ic1.R | 2 +-
NORMT3-1.0-3/NORMT3/R/is1.R | 2 +-
NORMT3-1.0-3/NORMT3/R/myInitMessages.R |only
NORMT3-1.0-3/NORMT3/R/wofz.R | 2 +-
9 files changed, 9 insertions(+), 9 deletions(-)
Title: Dynamic Correlation Package
Diff between dynCorr versions 0.1-1 dated 2009-02-03 and 0.1-2 dated 2012-10-31
Description: Computes dynamical correlation estimates and percentile
bootstrap confidence intervals for pairs of longitudinal
responses, including consideration of lags and derivatives.
Author: Joel Dubin, Dandi Qiao, Hans-Georg Mueller.
Maintainer: Joel Dubin
dynCorr-0.1-1/dynCorr/R/firstlib.r |only
dynCorr-0.1-2/dynCorr/DESCRIPTION | 26 ++++++++++++++------------
dynCorr-0.1-2/dynCorr/MD5 |only
dynCorr-0.1-2/dynCorr/NAMESPACE |only
dynCorr-0.1-2/dynCorr/man/bootstrapCI.rd | 14 +++++++++-----
5 files changed, 23 insertions(+), 17 deletions(-)
Title: Functions for simple A/B split test and multi-armed bandit
analysis
Diff between bandit versions 0.1 dated 2012-02-16 and 0.3.0 dated 2012-10-31
Description: A set of functions (intended to be used by the ruby gem
metricizer) for doing basic analysis of A/B split test data and
web metrics in general.
Author: Thomas Lotze
Maintainer: Thomas Lotze
DESCRIPTION | 12 +++++++-----
MD5 | 17 ++++++++++++-----
R/best_poisson_bandit.R |only
R/deseasonalized_trend.R |only
R/distribution_estimate.R |only
R/summarize_metrics.R | 27 ++++++++++++---------------
bandit.tar.gz |only
man/bandit-package.Rd | 7 ++++---
man/best_poisson_bandit.Rd |only
man/deseasonalized_trend.Rd |only
man/distribution_estimate.Rd |only
man/significance_analysis.Rd | 1 +
man/summarize_metrics.Rd | 24 ++++++++++++++----------
13 files changed, 50 insertions(+), 38 deletions(-)
Title: Wavelets statistics and transforms.
Diff between wavethresh versions 4.6 dated 2012-10-30 and 4.6.1 dated 2012-10-31
Description: Performs 1, 2 and 3D real and complex-valued wavelet
transforms, nondecimated transforms, wavelet packet transforms,
nondecimated wavelet packet transforms, multiple wavelet
transforms, complex-valued wavelet transforms, wavelet
shrinkage for various kinds of data, locally stationary wavelet
time series, nonstationary multiscale transfer function
modeling, density estimation.
Author: Guy Nason
Maintainer: Guy Nason
DESCRIPTION | 21
MD5 | 19
NAMESPACE | 65 +
R/function.r | 2278 +++++++++++++++++++++++++++++++------------------
inst/CHANGES | 3
man/cthresh.rd |only
man/filter.select.rd | 20
man/find.parameters.rd |only
man/make.dwwt.rd |only
man/test.dataCT.rd |only
man/wd.rd | 6
man/wst.rd | 6
src/cthreb.c |only
13 files changed, 1581 insertions(+), 837 deletions(-)
Title: Computes credible intervals for Bayesian wavelet shrinkage
Diff between waveband versions 4.5 dated 2010-03-16 and 4.6 dated 2012-10-31
Description: Computes Bayesian wavelet shrinkage credible intervals
Author: Stuart Barber
Maintainer: Guy Nason
waveband-4.5/waveband/data/nmr.R |only
waveband-4.6/waveband/DESCRIPTION | 10 ++---
waveband-4.6/waveband/MD5 |only
waveband-4.6/waveband/R/WBfunctions.r | 42 +++++++++++------------
waveband-4.6/waveband/R/test.data.R |only
waveband-4.6/waveband/data/nmr.rda |only
waveband-4.6/waveband/inst |only
waveband-4.6/waveband/src/wrow.c | 60 +++++++++++++++++-----------------
8 files changed, 56 insertions(+), 56 deletions(-)
Title: classes and methods for spatial data
Diff between sp versions 1.0-1 dated 2012-10-10 and 1.0-2 dated 2012-10-31
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma [aut, cre], Roger Bivand [aut]
Maintainer: Edzer Pebesma
sp-1.0-1/sp/ChangeLog |only
sp-1.0-2/sp/DESCRIPTION | 8
sp-1.0-2/sp/MD5 | 23
sp-1.0-2/sp/NAMESPACE | 4
sp-1.0-2/sp/R/SpatialPolygons-methods.R | 5
sp-1.0-2/sp/inst/ChangeLog | 3170 +++++++++++++-------------------
sp-1.0-2/sp/inst/doc/intro_sp.pdf |binary
sp-1.0-2/sp/inst/doc/over.Rnw | 15
sp-1.0-2/sp/inst/doc/over.pdf |binary
sp-1.0-2/sp/inst/include/sp_xports.c | 1
sp-1.0-2/sp/man/bpy.colors.Rd | 10
sp-1.0-2/sp/src/sp_xports.c | 1
sp-1.0-2/sp/tests/fail1.Rout.save | 9
13 files changed, 1393 insertions(+), 1853 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Vectorized Bivariate Normal CDF
Diff between pbivnorm versions 0.5-0 dated 2011-02-22 and 0.5-1 dated 2012-10-31
Description: Provides a vectorized R function for calculating
probabilities from a standard bivariate normal CDF.
Author: Fortran code by Alan Genz. R code by Brenton Kenkel, based on
Adelchi Azzalini's 'mnormt' package.
Maintainer: Brenton Kenkel
pbivnorm-0.5-0/pbivnorm/R/zzz.r |only
pbivnorm-0.5-1/pbivnorm/DESCRIPTION | 9 ++++-----
pbivnorm-0.5-1/pbivnorm/MD5 | 9 ++++-----
pbivnorm-0.5-1/pbivnorm/NAMESPACE | 7 ++-----
pbivnorm-0.5-1/pbivnorm/NEWS | 8 +++++++-
pbivnorm-0.5-1/pbivnorm/R/pbivnorm.r | 2 +-
6 files changed, 18 insertions(+), 17 deletions(-)
Title: Spatial areal unit modelling
Diff between CARBayes versions 1.1 dated 2012-08-27 and 1.2 dated 2012-10-31
Description: This package implements Bayesian hierarchical spatial
areal unit models. In such models the spatial correlation is
modelled by a set of random effects, which are assigned a
conditional autoregressive (CAR) prior distribution. Examples
of the models included are the BYM model as well as recently
developed localised spatial smoothing models. In addition,
Moran's I and Geary's C permutation tests for spatial
correlation can be implemented.The creation of this package was
supported by the Economic and Social Research Council (ESRC)
grant RES-000-22-4256.
Author: Duncan Lee
Maintainer: Duncan Lee
DESCRIPTION | 14
MD5 | 74 +-
NAMESPACE | 6
R/binomial.bymCAR.R | 366 ++++------
R/binomial.dissimilarityCARbinary.R | 996 ++++++++++++----------------
R/binomial.dissimilarityCARcontinuous.R | 993 ++++++++++++----------------
R/binomial.iarCAR.R | 272 +++----
R/binomial.independent.R | 193 ++---
R/binomial.lerouxCAR.R | 256 +++----
R/binomial.priorWCAR.R | 981 ++++++++++++---------------
R/binomial.properCAR.R | 271 +++----
R/gaussian.bymCAR.R | 212 ++----
R/gaussian.dissimilarityCARbinary.R | 664 ++++++++----------
R/gaussian.dissimilarityCARcontinuous.R | 726 +++++++++-----------
R/gaussian.iarCAR.R | 153 ++--
R/gaussian.independent.R | 95 --
R/gaussian.lerouxCAR.R | 190 ++---
R/gaussian.priorWCAR.R | 717 +++++++++-----------
R/gaussian.properCAR.R | 183 ++---
R/poisson.bymCAR.R | 347 ++++-----
R/poisson.dissimilarityCARbinary.R | 1017 +++++++++++++----------------
R/poisson.dissimilarityCARcontinuous.R | 1016 +++++++++++++---------------
R/poisson.iarCAR.R | 260 +++----
R/poisson.independent.R | 210 ++---
R/poisson.lerouxCAR.R | 855 ++++++++++++------------
R/poisson.priorWCAR.R | 986 ++++++++++++----------------
R/poisson.properCAR.R | 272 +++----
man/CARBayes-package.Rd | 6
man/binomial.dissimilarityCARbinary.Rd | 4
man/binomial.dissimilarityCARcontinuous.Rd | 2
man/binomial.priorWCAR.Rd | 4
man/gaussian.dissimilarityCARbinary.Rd | 4
man/gaussian.dissimilarityCARcontinuous.Rd | 2
man/gaussian.independent.Rd | 7
man/gaussian.priorWCAR.Rd | 4
man/poisson.dissimilarityCARbinary.Rd | 4
man/poisson.dissimilarityCARcontinuous.Rd | 2
man/poisson.priorWCAR.Rd | 4
38 files changed, 5720 insertions(+), 6648 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-03-17 4.5
Title: Triangulation of irregularly spaced data
Diff between tripack versions 1.3-4 dated 2009-09-21 and 1.3-5 dated 2012-10-31
Description: A constrained two-dimensional Delaunay triangulation
package
Author: Fortran code by R. J. Renka. R functions by Albrecht Gebhardt
Maintainer: Albrecht Gebhardt
tripack-1.3-4/tripack/.cvsignore |only
tripack-1.3-4/tripack/INDEX |only
tripack-1.3-4/tripack/R/zzz.R |only
tripack-1.3-4/tripack/data/tritest.R |only
tripack-1.3-4/tripack/data/tritest2.R |only
tripack-1.3-4/tripack/src/awvor.f |only
tripack-1.3-4/tripack/work |only
tripack-1.3-5/tripack/ChangeLog | 138 ++++++++++++++++----------
tripack-1.3-5/tripack/DESCRIPTION | 10 -
tripack-1.3-5/tripack/LICENSE | 2
tripack-1.3-5/tripack/MD5 |only
tripack-1.3-5/tripack/NAMESPACE |only
tripack-1.3-5/tripack/R/circum.R |only
tripack-1.3-5/tripack/R/circumcircle.R |only
tripack-1.3-5/tripack/R/hyperbola.R |only
tripack-1.3-5/tripack/R/is.left.of.R |only
tripack-1.3-5/tripack/R/left.R |only
tripack-1.3-5/tripack/R/plot.tri.R | 14 ++
tripack-1.3-5/tripack/R/plot.voronoi.R | 26 ++++
tripack-1.3-5/tripack/data/circtest.rda |only
tripack-1.3-5/tripack/data/circtest2.rda |only
tripack-1.3-5/tripack/data/tritest.rda |only
tripack-1.3-5/tripack/data/tritest2.rda |only
tripack-1.3-5/tripack/man/circtest.Rd |only
tripack-1.3-5/tripack/man/circum.Rd |only
tripack-1.3-5/tripack/man/circumcircle.Rd |only
tripack-1.3-5/tripack/man/left.Rd |only
tripack-1.3-5/tripack/man/plot.tri.Rd | 3
tripack-1.3-5/tripack/man/plot.voronoi.Rd | 32 ++++--
tripack-1.3-5/tripack/man/print.voronoi.Rd | 2
tripack-1.3-5/tripack/man/summary.voronoi.Rd | 4
tripack-1.3-5/tripack/man/tripack-internal.Rd | 8 +
tripack-1.3-5/tripack/src/dsos.f | 58 +++++-----
tripack-1.3-5/tripack/src/init.c | 21 ---
tripack-1.3-5/tripack/src/left.f |only
tripack-1.3-5/tripack/src/tripack.f | 134 ++++++++++++-------------
tripack-1.3-5/tripack/src/tripack.h | 6 -
tripack-1.3-5/tripack/src/vleft.f |only
38 files changed, 264 insertions(+), 194 deletions(-)
Title: adephylo: exploratory analyses for the phylogenetic comparative
method.
Diff between adephylo versions 1.1-2 dated 2011-11-07 and 1.1-3 dated 2012-10-31
Description: Multivariate tools to analyze comparative data, i.e. a
phylogeny and some traits measured for each taxa.
Author: Thibaut Jombart
Maintainer: Thibaut Jombart
adephylo-1.1-2/adephylo/inst/doc/figs |only
adephylo-1.1-3/adephylo/ChangeLog | 23 ++++++
adephylo-1.1-3/adephylo/DESCRIPTION | 18 ++---
adephylo-1.1-3/adephylo/MD5 | 82 ++++++++++++------------
adephylo-1.1-3/adephylo/NAMESPACE | 4 +
adephylo-1.1-3/adephylo/R/abouheif.R | 2
adephylo-1.1-3/adephylo/R/dibas.R |only
adephylo-1.1-3/adephylo/R/orthogram.R | 4 -
adephylo-1.1-3/adephylo/R/ppca.R | 4 -
adephylo-1.1-3/adephylo/R/utils.R | 2
adephylo-1.1-3/adephylo/R/zzz.R | 6 -
adephylo-1.1-3/adephylo/data/carni19.RData |binary
adephylo-1.1-3/adephylo/data/carni70.RData |binary
adephylo-1.1-3/adephylo/data/lizards.RData |binary
adephylo-1.1-3/adephylo/data/maples.RData |binary
adephylo-1.1-3/adephylo/data/mjrochet.RData |binary
adephylo-1.1-3/adephylo/data/palm.RData |binary
adephylo-1.1-3/adephylo/data/procella.RData |binary
adephylo-1.1-3/adephylo/data/tithonia.RData |binary
adephylo-1.1-3/adephylo/data/ungulates.RData |binary
adephylo-1.1-3/adephylo/inst/doc/adephylo.pdf |binary
adephylo-1.1-3/adephylo/man/adephylo.package.Rd | 4 -
adephylo-1.1-3/adephylo/man/dibas.Rd |only
adephylo-1.1-3/adephylo/src/distPhylo.c | 70 ++++++++++++++++++--
adephylo-1.1-3/adephylo/src/misc.c |only
adephylo-1.1-3/adephylo/src/sptips.c | 1
adephylo-1.1-3/adephylo/vignettes |only
27 files changed, 155 insertions(+), 65 deletions(-)
Title: provides objects and tools to manipulate irregular heterogeneous
time data and subtime data.
Diff between timetools versions 1.1-3 dated 2012-09-25 and 1.1-6 dated 2012-10-31
Description: This package is intended to manipulate irregular time
series such as subtime series, series based on time intervals,
etc. This package uses only POSIX* format. Main things defined
in this package are the classes POSIXcti, POSIXctp,
TimeIntervalDataFrame, TimeInstantDataFrame, SubtimeDataFrame,
methods to switch from one class to another and the
changeSupport method for TimeIntervalDataFrame.
Author: Vladislav Navel
Maintainer: Vladislav Navel
DESCRIPTION | 10 +++----
MD5 | 16 ++++++------
R/TimeInstantDataFrame.R | 47 ++++++++++++++++++++++---------------
R/TimeIntervalDataFrame.R | 43 ++++++++++++++++++++++-----------
R/tt_plot.R | 15 +++++++++--
README | 14 ++++++++++-
TODO | 4 ++-
man/TimeIntervalDataFrame-class.Rd | 2 -
man/timetools-package.Rd | 4 +--
9 files changed, 101 insertions(+), 54 deletions(-)
Title: Statistical transformations for post-processing climate model
output
Diff between qmap versions 1.0-0 dated 2012-03-21 and 1.0-1 dated 2012-10-31
Description: Empirical adjustment of the distribution of variables
originating from (regional) climate model simulations using
quantile mapping.
Author: Lukas Gudmundsson
Maintainer: Lukas Gudmundsson
ChangeLog |only
DESCRIPTION | 13 +++++++------
MD5 | 26 ++++++++++++++------------
inst |only
man/berngamma.Rd | 16 ++++++++--------
man/bernlnorm.Rd | 2 +-
man/bernweibull.Rd | 2 +-
man/fitqmap.Rd | 10 ++++++++++
man/fitqmapdist.Rd | 15 ++++++++++++---
man/fitqmapptf.Rd | 12 ++++++++++--
man/fitqmapquant.Rd | 11 ++++++++++-
man/fitqmaprquant.Rd | 2 +-
man/fitqmapssplin.Rd | 9 +++++++++
man/obsprecip.Rd | 4 ++--
man/qmap-package.Rd | 23 ++++++++++++++++-------
15 files changed, 101 insertions(+), 44 deletions(-)
Title: Machine coded genetic algorithms for real-valued optimization
problems
Diff between mcga versions 2.0.5 dated 2012-01-09 and 2.0.6 dated 2012-10-31
Description: Machine coded genetic algorithm (MCGA) is a fast tool for
real-valued optimization problems. It uses the byte
representation of variables rather than real-values. It
performs the classical crossover operations (uniform) on these
byte representations. Mutation operator is also similar to
classical mutation operator, which is to say, it changes a
randomly selected byte value of a chromosome by +1 or -1 with
probability 1/2. In MCGAs there is no need for
encoding-decoding process and the classical operators are
directly applicable on real-values. It is fast and can handle a
wide range of a search space with high precision. Using a
256-unary alphabet is the main disadvantage of this algorithm
but a moderate size population is convenient for many problems.
Package also includes multi_mcga function for multi objective
optimization problems. This function sorts the chromosomes
using their ranks calculated from the non-dominated sorting
algorithm.
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman
DESCRIPTION | 15 ++++++++-------
MD5 | 6 +++---
NAMESPACE | 1 +
R/zzz.r | 10 +++++-----
4 files changed, 17 insertions(+), 15 deletions(-)
Title: Time Series Analysis
Diff between TSA versions 0.99 dated 2012-09-12 and 1.0 dated 2012-10-31
Description: Contains R functions and datasets detailed in the book
"Time Series Analysis with Applications in R (second edition)"
by Jonathan Cryer and Kung-Sik Chan
Author: Kung-Sik Chan, Brian Ripley
Maintainer: Kung-Sik Chan
DESCRIPTION | 10 +++++-----
MD5 | 16 ++++++++++------
R/arima.R |only
R/arimax.R |only
R/tsdiag.Arima.R | 14 ++++++--------
R/tsdiag.TAR.R | 5 ++---
changes | 7 +++++++
man/TSA-package.Rd | 10 ++++------
man/arima.Rd |only
man/arima.boot.Rd | 2 ++
man/arimax.Rd |only
11 files changed, 36 insertions(+), 28 deletions(-)
Title: Polynomial spline routines
Diff between polspline versions 1.1.5 dated 2010-11-25 and 1.1.6 dated 2012-10-31
Description: Routines for the polynomial spline fitting routines hazard
regression, hazard estimation with flexible tails, logspline,
lspec, polyclass, and polymars, by C. Kooperberg and co-authors
Author: Charles Kooperberg
Maintainer: Charles Kooperberg
DESCRIPTION | 7 ++--
MD5 |only
NAMESPACE |only
R/polspline.R | 1
src/hareall.c | 29 +++---------------
src/heftall.c | 90 ++++++++++++++++++++++++++++++---------------------------
src/lspecall.c | 26 ++++++----------
src/nlsd.c | 3 -
src/polyall.c | 10 +-----
9 files changed, 70 insertions(+), 96 deletions(-)
Title: Data Sets from Montgomery, Peck and Vining's Book
Diff between MPV versions 1.25 dated 2008-01-01 and 1.27 dated 2012-10-31
Description: These data sets are taken from the book Introduction to
Linear Regression Analysis (3rd ed), by the above authors.
Author: W.J. Braun
Maintainer: W.J. Braun
MPV-1.25/MPV/INDEX |only
MPV-1.25/MPV/README |only
MPV-1.25/MPV/data/cement.R |only
MPV-1.25/MPV/data/p11.12.R |only
MPV-1.25/MPV/data/p11.15.R |only
MPV-1.25/MPV/data/p12.11.R |only
MPV-1.25/MPV/data/p12.12.R |only
MPV-1.25/MPV/data/p12.8.R |only
MPV-1.25/MPV/data/p13.1.R |only
MPV-1.25/MPV/data/p13.16.R |only
MPV-1.25/MPV/data/p13.2.R |only
MPV-1.25/MPV/data/p13.20.R |only
MPV-1.25/MPV/data/p13.3.R |only
MPV-1.25/MPV/data/p13.4.R |only
MPV-1.25/MPV/data/p13.5.R |only
MPV-1.25/MPV/data/p13.6.R |only
MPV-1.25/MPV/data/p13.7.R |only
MPV-1.25/MPV/data/p14.1.R |only
MPV-1.25/MPV/data/p14.2.R |only
MPV-1.25/MPV/data/p15.4.R |only
MPV-1.25/MPV/data/p2.10.R |only
MPV-1.25/MPV/data/p2.12.R |only
MPV-1.25/MPV/data/p2.13.R |only
MPV-1.25/MPV/data/p2.14.R |only
MPV-1.25/MPV/data/p2.15.R |only
MPV-1.25/MPV/data/p2.16.R |only
MPV-1.25/MPV/data/p2.7.R |only
MPV-1.25/MPV/data/p2.9.R |only
MPV-1.25/MPV/data/p4.18.R |only
MPV-1.25/MPV/data/p4.19.R |only
MPV-1.25/MPV/data/p4.20.R |only
MPV-1.25/MPV/data/p5.1.R |only
MPV-1.25/MPV/data/p5.10.R |only
MPV-1.25/MPV/data/p5.11.R |only
MPV-1.25/MPV/data/p5.2.R |only
MPV-1.25/MPV/data/p5.3.R |only
MPV-1.25/MPV/data/p5.4.R |only
MPV-1.25/MPV/data/p5.5.R |only
MPV-1.25/MPV/data/p7.1.R |only
MPV-1.25/MPV/data/p7.11.R |only
MPV-1.25/MPV/data/p7.15.R |only
MPV-1.25/MPV/data/p7.16.R |only
MPV-1.25/MPV/data/p7.19.R |only
MPV-1.25/MPV/data/p7.2.R |only
MPV-1.25/MPV/data/p7.4.R |only
MPV-1.25/MPV/data/p7.6.R |only
MPV-1.25/MPV/data/p8.11.R |only
MPV-1.25/MPV/data/p8.3.R |only
MPV-1.25/MPV/data/p9.10.R |only
MPV-1.25/MPV/data/softdrink.R |only
MPV-1.25/MPV/data/solar.R |only
MPV-1.25/MPV/data/stackloss.R |only
MPV-1.25/MPV/data/table.b1.R |only
MPV-1.25/MPV/data/table.b10.R |only
MPV-1.25/MPV/data/table.b11.R |only
MPV-1.25/MPV/data/table.b12.R |only
MPV-1.25/MPV/data/table.b13.R |only
MPV-1.25/MPV/data/table.b14.R |only
MPV-1.25/MPV/data/table.b2.R |only
MPV-1.25/MPV/data/table.b3.R |only
MPV-1.25/MPV/data/table.b4.R |only
MPV-1.25/MPV/data/table.b5.R |only
MPV-1.25/MPV/data/table.b6.R |only
MPV-1.25/MPV/data/table.b7.R |only
MPV-1.25/MPV/data/table.b8.R |only
MPV-1.25/MPV/data/table.b9.R |only
MPV-1.27/MPV/DESCRIPTION | 12 +++++++-----
MPV-1.27/MPV/MD5 |only
MPV-1.27/MPV/NAMESPACE |only
MPV-1.27/MPV/data/cement.rda |only
MPV-1.27/MPV/data/p11.12.rda |only
MPV-1.27/MPV/data/p11.15.rda |only
MPV-1.27/MPV/data/p12.11.rda |only
MPV-1.27/MPV/data/p12.12.rda |only
MPV-1.27/MPV/data/p12.8.rda |only
MPV-1.27/MPV/data/p13.1.rda |only
MPV-1.27/MPV/data/p13.16.rda |only
MPV-1.27/MPV/data/p13.2.rda |only
MPV-1.27/MPV/data/p13.20.rda |only
MPV-1.27/MPV/data/p13.3.rda |only
MPV-1.27/MPV/data/p13.4.rda |only
MPV-1.27/MPV/data/p13.5.rda |only
MPV-1.27/MPV/data/p13.6.rda |only
MPV-1.27/MPV/data/p13.7.rda |only
MPV-1.27/MPV/data/p14.1.rda |only
MPV-1.27/MPV/data/p14.2.rda |only
MPV-1.27/MPV/data/p15.4.rda |only
MPV-1.27/MPV/data/p2.10.rda |only
MPV-1.27/MPV/data/p2.12.rda |only
MPV-1.27/MPV/data/p2.13.rda |only
MPV-1.27/MPV/data/p2.14.rda |only
MPV-1.27/MPV/data/p2.15.rda |only
MPV-1.27/MPV/data/p2.16.rda |only
MPV-1.27/MPV/data/p2.7.rda |only
MPV-1.27/MPV/data/p2.9.rda |only
MPV-1.27/MPV/data/p4.18.rda |only
MPV-1.27/MPV/data/p4.19.rda |only
MPV-1.27/MPV/data/p4.20.rda |only
MPV-1.27/MPV/data/p5.1.rda |only
MPV-1.27/MPV/data/p5.10.rda |only
MPV-1.27/MPV/data/p5.11.rda |only
MPV-1.27/MPV/data/p5.2.rda |only
MPV-1.27/MPV/data/p5.3.rda |only
MPV-1.27/MPV/data/p5.4.rda |only
MPV-1.27/MPV/data/p5.5.rda |only
MPV-1.27/MPV/data/p7.1.rda |only
MPV-1.27/MPV/data/p7.11.rda |only
MPV-1.27/MPV/data/p7.15.rda |only
MPV-1.27/MPV/data/p7.16.rda |only
MPV-1.27/MPV/data/p7.19.rda |only
MPV-1.27/MPV/data/p7.2.rda |only
MPV-1.27/MPV/data/p7.4.rda |only
MPV-1.27/MPV/data/p7.6.rda |only
MPV-1.27/MPV/data/p8.11.rda |only
MPV-1.27/MPV/data/p8.3.rda |only
MPV-1.27/MPV/data/p9.10.rda |only
MPV-1.27/MPV/data/softdrink.rda |only
MPV-1.27/MPV/data/solar.rda |only
MPV-1.27/MPV/data/stackloss.rda |only
MPV-1.27/MPV/data/table.b1.rda |only
MPV-1.27/MPV/data/table.b10.rda |only
MPV-1.27/MPV/data/table.b11.rda |only
MPV-1.27/MPV/data/table.b12.rda |only
MPV-1.27/MPV/data/table.b13.rda |only
MPV-1.27/MPV/data/table.b14.rda |only
MPV-1.27/MPV/data/table.b2.rda |only
MPV-1.27/MPV/data/table.b3.rda |only
MPV-1.27/MPV/data/table.b4.rda |only
MPV-1.27/MPV/data/table.b5.rda |only
MPV-1.27/MPV/data/table.b6.rda |only
MPV-1.27/MPV/data/table.b7.rda |only
MPV-1.27/MPV/data/table.b8.rda |only
MPV-1.27/MPV/data/table.b9.rda |only
133 files changed, 7 insertions(+), 5 deletions(-)
Title: Functions to operate on binary fingerprint data
Diff between fingerprint versions 3.4.8.1 dated 2012-09-03 and 3.4.9 dated 2012-10-31
Description: This package contains functions to manipulate binary
fingerprints of arbitrary length. A fingerprint is represented
by an object of S4 class 'fingerprint' which is internally
represented a vector of integers, such that each element
represents the position in the fingerprint that is set to 1.
The bitwise logical functions in R are overridden so that they
can be used directly with 'fingerprint' objects. A number of
distance metrics are also available (many contributed by
Michael Fadock). Fingerprints can be converted to Euclidean
vectors (i.e., points on the unit hypersphere) and can also be
folded using OR. Arbitrary fingerprint formats can be handled
via line handlers. Currently handlers are provided for CDK, MOE
and BCI fingerprint data.
Author: Rajarshi Guha
Maintainer: Rajarshi Guha
ChangeLog | 6 ++++++
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/matrix.R | 21 +++++++++++++++++++++
4 files changed, 34 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-04-13 1.0.7
2006-06-10 1.0.6