Thu, 01 Nov 2012

Package EpiContactTrace updated to version 0.7.1 with previous version 0.6.9 dated 2012-06-21

Title: Epidemiological tool for contact tracing.
Description: Routines for epidemiological contact tracing and visualisation of network of contacts.
Author: Stefan Widgren Maria Noremark
Maintainer: Stefan Widgren

Diff between EpiContactTrace versions 0.6.9 dated 2012-06-21 and 0.7.1 dated 2012-11-01

 DESCRIPTION                         |   12 
 MD5                                 |   75 ++--
 NAMESPACE                           |    1 
 NEWS                                |   38 ++
 R/ContactTrace.r                    |    6 
 R/Contacts.r                        |   10 
 R/EpiContactTrace-package.r         |   18 -
 R/in-degree.r                       |  137 ++++++---
 R/ingoing-contact-chain.r           |  135 ++++++--
 R/network-structure.r               |   18 -
 R/network-summary.r                 |  225 ++++++++++++--
 R/out-degree.r                      |  133 ++++++--
 R/outgoing-contact-chain.r          |  135 ++++++--
 R/plot.r                            |   18 -
 R/report.r                          |   30 -
 R/shortest-paths.r                  |    8 
 R/show.r                            |   16 -
 R/trace.R                           |  546 +++++++++++++-----------------------
 inst/Sweave/speak-html.rnw          |  432 ++++++++++++++--------------
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 inst/tests/test-trace.R             |  282 +++++++++++++++++-
 man/ContactTrace-class.Rd           |    6 
 man/Contacts-class.Rd               |    8 
 man/EpiContactTrace-package.Rd      |   12 
 man/InDegree-methods.Rd             |   74 +++-
 man/IngoingContactChain-methods.Rd  |   72 +++-
 man/NetworkStructure-methods.Rd     |    4 
 man/NetworkSummary-methods.Rd       |   58 ++-
 man/OutDegree-methods.Rd            |   75 +++-
 man/OutgoingContactChain-methods.Rd |   71 +++-
 man/Report-methods.Rd               |   24 -
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 man/TraceDateInterval.Rd            |   23 -
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 man/transfers.Rd                    |    6 
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 38 files changed, 1692 insertions(+), 1044 deletions(-)

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Package SwissAir updated to version 1.1.4 with previous version 1.1.2 dated 2012-10-30

Title: Air Quality Data of Switzerland for one year in 30 min Resolution
Description: Ozone, NOx (= Sum of Nitrogenmonoxide and Nitrogendioxide), Nitrogenmonoxide, ambient temperature, dew point, wind speed and wind direction at 3 sites around lake of Lucerne in Central Switzerland in 30 min time resolution for year 2004.
Author: Rene Locher
Maintainer: Rene Locher

Diff between SwissAir versions 1.1.2 dated 2012-10-30 and 1.1.4 dated 2012-11-01

 ChangeLog        |   13 ++++++++++++-
 DESCRIPTION      |   11 ++++++-----
 MD5              |   10 +++++-----
 NAMESPACE        |    6 +++---
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 man/AirQual.Rd   |    1 -
 6 files changed, 26 insertions(+), 15 deletions(-)

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New package mcll with initial version 1.0
Package: mcll
Type: Package
Title: Monte Carlo Local Likelihood Estimation
Version: 1.0
Date: 2012-10-28
Author: Minjeong Jeon , Cari Kaufman , and Sophia Rabe-Hesketh
Maintainer: Minjeong Jeon
Depends: R (>= 2.13.0), locfit, statmod
Description: Maximum likelihood estimation using a Monte Carlo local likelihood (MCLL) method
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-11-01 19:00:32 UTC; Administrator
Repository: CRAN
Date/Publication: 2012-11-01 19:24:16

More information about mcll at CRAN
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Package isopam updated to version 0.9-12 with previous version 0.9-10 dated 2010-10-23

Title: Isopam (Clustering)
Description: Isopam clustering algorithm and utilities. Isopam optimizes clusters and optionally cluster numbers in a brute force style and aims at an optimum separation by all or some descriptors (typically species).
Author: Sebastian Schmidtlein
Maintainer: Sebastian Schmidtlein

Diff between isopam versions 0.9-10 dated 2010-10-23 and 0.9-12 dated 2012-11-01

 isopam-0.9-10/isopam/man/isotab.rd |only
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 10 files changed, 34 insertions(+), 34 deletions(-)

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Package bit64 updated to version 0.9-2 with previous version 0.9-1 dated 2012-10-24

Title: A S3 class for vectors of 64bit integers
Description: Package 'bit64' provides serializable S3 atomic 64bit (signed) integers that can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support interactive data exploration and manipulation and optionally leverage caching.
Author: Jens Oehlschlägel
Maintainer: Jens Oehlschlägel

Diff between bit64 versions 0.9-1 dated 2012-10-24 and 0.9-2 dated 2012-11-01

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 bit64-0.9-2/bit64/bit64-Ex.R      |    4 +-
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 bit64-0.9-2/bit64/src/sort64.h    |    2 -
 9 files changed, 65 insertions(+), 31 deletions(-)

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Package autopls updated to version 1.2-2 with previous version 1.1 dated 2012-10-23

Title: pls regression with backward selection of predictors
Description: An extension of the pls package with automated backward selection of predictors
Author: Sebastian Schmidtlein, with contributions from Carsten Oldenburg and Hannes Feilhauer
Maintainer: Sebastian Schmidtlein

Diff between autopls versions 1.1 dated 2012-10-23 and 1.2-2 dated 2012-11-01

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 21 files changed, 1019 insertions(+), 680 deletions(-)

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Package amei updated to version 1.0-5 with previous version 1.0-4 dated 2010-07-30

Title: Adaptive Management of Epidemiological Interventions
Description: This package provides a flexible statistical framework for generating optimal epidemiological interventions that are designed to minimize the total expected cost of an emerging epidemic while simultaneously propagating uncertainty regarding underlying disease parameters through to the decision process via Bayesian posterior inference. The strategies produced through this framework are adaptive: vaccination schedules are iteratively adjusted to reflect the anticipated trajectory of the epidemic given the current population state and updated parameter estimates.
Author: Daniel Merl , Leah R. Johnson , Robert B. Gramacy , and Marc S. Mangel
Maintainer: Robert B. Gramacy

Diff between amei versions 1.0-4 dated 2010-07-30 and 1.0-5 dated 2012-11-01

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 23 files changed, 58 insertions(+), 48 deletions(-)

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Package adegenet updated to version 1.3-5 with previous version 1.3-4 dated 2012-01-18

Title: adegenet: an R package for the exploratory analysis of genetic and genomic data.
Description: Classes and functions for genetic data analysis within the multivariate framework.
Author: Thibaut Jombart
Maintainer: Thibaut Jombart

Diff between adegenet versions 1.3-4 dated 2012-01-18 and 1.3-5 dated 2012-11-01

 ChangeLog                           |   32 +
 DESCRIPTION                         |   23 -
 MD5                                 |  114 +++----
 NAMESPACE                           |    6 
 R/auxil.R                           |   48 ++
 R/chooseCN.R                        |    6 
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 62 files changed, 1266 insertions(+), 749 deletions(-)

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Permanent link

Package GEOmap updated to version 1.6-09 with previous version 1.6-06 dated 2012-07-02

Title: Topographic and Geologic Mapping
Description: Set of routines for making Map Projections (forward and inverse), Topographic Maps, Perspective plots, Geological Maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees

Diff between GEOmap versions 1.6-06 dated 2012-07-02 and 1.6-09 dated 2012-11-01

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Package fpow updated to version 0.0-2 with previous version 0.0-1 dated 2009-03-01

Title: Computing the noncentrality parameter of the noncentral F distribution
Description: Returns the noncentrality parameter of the noncentral F distribution if probability of type I and type II error, degrees of freedom of the numerator and the denominator are given. It may be useful for computing minimal detectable differences for general ANOVA models. This program is documented in the paper of A. Baharev, S. Kemeny, On the computation of the noncentral F and noncentral beta distribution; Statistics and Computing, 2008, 18 (3), 333-340.
Author: Ali Baharev
Maintainer: Ali Baharev

Diff between fpow versions 0.0-1 dated 2009-03-01 and 0.0-2 dated 2012-11-01

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 9 files changed, 22 insertions(+), 41 deletions(-)

More information about fpow at CRAN
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Package extrafont updated to version 0.12 with previous version 0.11 dated 2012-08-24

Title: Tools for using fonts
Description: Tools to using fonts other than the standard PostScript fonts. This package makes it easy to use system TrueType fonts and with PDF or PostScript output files, and with bitmap output files in Windows. extrafont can also be used with fonts packaged specifically to be used with, such as the fontcm package, which has Computer Modern PostScript fonts with math symbols. See https://github.com/wch/extrafont for instructions and examples.
Author: Winston Chang ,
Maintainer: Winston Chang

Diff between extrafont versions 0.11 dated 2012-08-24 and 0.12 dated 2012-11-01

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 26 files changed, 126 insertions(+), 91 deletions(-)

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Package sudoku updated to version 2.4 with previous version 2.2 dated 2009-02-03

Title: Sudoku Puzzle Generator and Solver
Description: Generates, plays, and solves Sudoku puzzles. The GUI playSudoku() needs package "tkrplot" if you are not on Windows.
Author: David Brahm and Greg Snow , with contributions from Curt Seeliger and Henrik Bengtsson .
Maintainer: David Brahm

Diff between sudoku versions 2.2 dated 2009-02-03 and 2.4 dated 2012-11-01

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Package R.utils updated to version 1.18.0 with previous version 1.16.2 dated 2012-09-13

Title: Various programming utilities
Description: This package provides utility classes and methods useful when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson

Diff between R.utils versions 1.16.2 dated 2012-09-13 and 1.18.0 dated 2012-11-01

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Package R2MLwiN updated to version 0.1-1 with previous version 0.1-0 dated 2012-09-07

Title: Running MLwiN from within R
Description: R2MLwiN is an R command interface to the MLwiN multilevel modelling software package, allowing users to fit multilevel models using MLwiN from within the R environment.
Author: Zhengzheng Zhang, Chris Charlton, Richard Parker, George Leckie, William Browne
Maintainer: Zhengzheng Zhang

Diff between R2MLwiN versions 0.1-0 dated 2012-09-07 and 0.1-1 dated 2012-11-01

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Package ljr updated to version 1.3-0 with previous version 1.2-2 dated 2009-05-05

Title: Logistic Joinpoint Regression
Description: Fits and tests logistic joinpoint models.
Author: Michal Czajkowski, Ryan Gill, Greg Rempala
Maintainer: Ryan Gill

Diff between ljr versions 1.2-2 dated 2009-05-05 and 1.3-0 dated 2012-11-01

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New package downloader with initial version 0.1
Package: downloader
Maintainer: Winston Chang
Author: Winston Chang
Version: 0.1
License: GPL-2
Title: A package for downloading files over https
Description: This package provides a wrapper for the download.file function, making it possible to download files over https on Windows, Mac OS X, and other Unix-like platforms. The RCurl package provides this functionality (and much more) but can be difficult to install because it must be compiled with external dependencies. This package has no external dependencies, so it is much easier to install.
Collate: 'downloader-package.r' 'download.r'
Packaged: 2012-10-31 20:43:55 UTC; winston
Repository: CRAN
Date/Publication: 2012-11-01 14:49:51

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Package argosfilter updated to version 0.63 with previous version 0.62 dated 2010-04-11

Title: Argos locations filter
Description: Functions to filters animal satellite tracking data obtained from Argos. It is especially indicated for telemetry studies of marine animals, where Argos locations are predominantly of low-quality.
Author: Carla Freitas
Maintainer: Carla Freitas

Diff between argosfilter versions 0.62 dated 2010-04-11 and 0.63 dated 2012-11-01

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Package somplot (with last version 1.05) was removed from CRAN

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Package vowels (with last version 1.1) was removed from CRAN

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Package soil.spec (with last version 1.4) was removed from CRAN

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Package xgobi updated to version 1.2-15 with previous version 1.2-14 dated 2009-02-16

Title: Interface to the XGobi and XGvis programs for graphical data analysis
Description: Interface to the XGobi and XGvis programs for graphical data analysis.
Author: Martin Maechler, originally packaged for R by Kurt Hornik , based on the S code in the XGobi distribution. Windows port based on this and earlier work by Brian Ripley .
Maintainer: Martin Maechler

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Package MindOnStats updated to version 0.8 with previous version 0.5 dated 2011-09-12

Title: Data sets included in Utts and Heckard's Mind on Statistics
Description: 46 data sets that were imported using read.table() where appropriate but more commonly after converting to a csv file for importing via read.csv().
Author: Jonathan Godfrey
Maintainer: Jonathan Godfrey

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Package mblm (with last version 0.11) was removed from CRAN

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Package tweedie updated to version 2.1.5 with previous version 2.1.3 dated 2012-09-24

Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
Author: Peter K Dunn
Maintainer: Peter K Dunn

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Package Dodge updated to version 0.7 with previous version 0.6 dated 2012-03-14

Title: Functions for Acceptance Sampling Ideas originated by H.F. Dodge
Description: Various sampling plans are able to be compared using evaluations of their OC, AOQ, ATI etc.
Author: Jonathan Godfrey and Raj Govindaraju
Maintainer: Jonathan Godfrey

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Package Rassoc (with last version 1.03) was removed from CRAN

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