Package fastcluster updated to version 1.1.8 with previous version 1.1.7 dated 2012-09-21

Title: Fast hierarchical clustering routines for R and Python
Description: This is a two-in-one package which provides interfaces to both R and Python. It implements fast hierarchical, agglomerative clustering routines. Part of the functionality is designed as drop-in replacement for existing routines: “linkage” in the SciPy package “scipy.cluster.hierarchy”, “hclust” in R's “stats” package, and the “flashClust” package. It provides the same functionality, with the benefit of a much faster implementation. Moreover, there are memory-saving routines for clustering of vector data, which go beyond what the existing packages provide. For information on how to install the Python files, see the file INSTALL in the source distribution.
Author: Daniel Müllner, http://math.stanford.edu/~muellner
Maintainer: Daniel Müllner

Diff between fastcluster versions 1.1.7 dated 2012-09-21 and 1.1.8 dated 2013-01-19

 DESCRIPTION                |   10 
 INSTALL                    |    6 
 LICENSE                    |only
 MD5                        |   28 +-
 NEWS                       |   14 +
 README                     |    4 
 inst/CITATION              |    4 
 inst/doc/fastcluster.Rtex  |   29 +-
 inst/doc/fastcluster.pdf   |binary
 python/fastcluster.py      |   14 +
 python/setup.py            |    5 
 python/test/nantest.py     |only
 src/fastcluster.cpp        |  472 +++++++++++++++++++++------------------------
 src/fastcluster_R.cpp      |  123 +++++++----
 src/fastcluster_python.cpp |  290 ++++++++++++++++++---------
 tests/test_fastcluster.R   |    2 
 16 files changed, 569 insertions(+), 432 deletions(-)

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New package currentSurvival with initial version 1.0
Package: currentSurvival
Version: 1.0
Date: 2013-01-19
Title: Estimation of CCI and CLFS Functions
Author: Eva Janousova, Tomas Pavlik, Jiri Mayer, Ladislav Dusek
Maintainer: Eva Janousova
Depends: R (>= 2.13.0), survival, cmprsk
Description: The currentSurvival package contains functions for the estimation of the current cumulative incidence (CCI) and the current leukaemia-free survival (CLFS). The CCI is the probability that a patient is alive and in any disease remission (e.g. complete cytogenetic remission in chronic myeloid leukaemia) after initiating his or her therapy (e.g. tyrosine kinase therapy for chronic myeloid leukaemia). The CLFS is the probability that a patient is alive and in any disease remission after achieving the first disease remission.
License: GPL (>= 2)
Packaged: 2013-01-19 17:49:05 UTC; janousova
Repository: CRAN
Date/Publication: 2013-01-19 19:54:21

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Package bscr updated to version 1.1 with previous version 1.0 dated 2013-01-15

Title: Bayesian parametric and semi-parametric analyses for semi-competing risks data
Description: Algorithms for Bayesian analysis of semi-competing risks data.
Author: Kyu Ha Lee, Sebastien Haneuse, Deborah Schrag, and Francesca Dominici
Maintainer: Kyu Ha Lee

Diff between bscr versions 1.0 dated 2013-01-15 and 1.1 dated 2013-01-19

 DESCRIPTION      |   10 +++++-----
 MD5              |   20 ++++++++++----------
 man/BpeScr.Rd    |    2 +-
 man/BpeSurv.Rd   |    2 +-
 man/BweibScr.Rd  |    2 +-
 man/BweibSurv.Rd |    2 +-
 man/EhrBpe.Rd    |    2 +-
 man/EhrBweib.Rd  |    2 +-
 man/SimScr.Rd    |    2 +-
 man/SimSurv.Rd   |    2 +-
 man/bscr.Rd      |    6 +++---
 11 files changed, 26 insertions(+), 26 deletions(-)

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Package adaptsmoFMRI updated to version 1.1 with previous version 1.0 dated 2012-11-10

Title: Adaptive Smoothing of FMRI Data
Description: This package contains R functions for estimating the blood oxygenation level dependent (BOLD) effect by using functional Magnetic Resonance Imaging (fMRI) data, based on adaptive Gauss Markov random fields, for real as well as simulated data. The implemented simulations make use of efficient Markov Chain Monte Carlo methods.
Author: Max Hughes
Maintainer: Max Hughes

Diff between adaptsmoFMRI versions 1.0 dated 2012-11-10 and 1.1 dated 2013-01-19

 DESCRIPTION                   |   12 ++++----
 MD5                           |   18 ++++++-------
 NAMESPACE                     |    3 +-
 R/adaptive-gmrf-2covar.R      |   58 +++++++++++++++++++++++++++++-------------
 R/adaptive-gmrf.R             |    2 -
 R/sim-adaptive-gmrf-2covar.R  |   53 +++++++++++++++++++++-----------------
 man/adaptiveGMRF.Rd           |    2 -
 man/adaptiveGMRF2COVAR.Rd     |    2 -
 man/adaptsmoFMRI-package.Rd   |    5 +--
 man/sim.adaptiveGMRF2COVAR.Rd |   18 -------------
 10 files changed, 94 insertions(+), 79 deletions(-)

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New package RcppXts with initial version 0.0.4
Package: RcppXts
Type: Package
Title: Interface the xts API via Rcpp
Version: 0.0.4
Date: $Date: 2013-01-18 12:49:03 -0600 (Fri, 18 Jan 2013) $
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Description: This package provides access to some of the C level functions of the xts package. In its current state, the package is mostly a proof-of-concept to support adding useful functions, and does not yet add any of its own.
License: GPL (>= 2)
Depends: methods, Rcpp (>= 0.10.2), xts (>= 0.9-2)
LinkingTo: Rcpp, xts
RcppModules: xts
Packaged: 2013-01-18 18:49:31.327664 UTC; edd
Repository: CRAN
Date/Publication: 2013-01-19 09:45:45

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New package streamR with initial version 0.1
Package: streamR
Title: Access to Twitter Streaming API via R
Description: This package provides a series of functions that allow R users to access Twitter's filter, sample, and user streams, and to parse the output into data frames. OAuth authentication is supported.
Version: 0.1
Author: Pablo Barbera
Maintainer: Pablo Barbera
Depends: R (>= 2.12.0), RCurl, rjson
Suggests: ROAuth (>= 0.9.0)
License: GPL-2
Collate: 'filterStream.R' 'parseTweets.R' 'sampleStream.R' 'userStream.R' 'streamR-package.R'
Packaged: 2013-01-19 05:09:40 UTC; pablobarbera
Repository: CRAN
Date/Publication: 2013-01-19 08:27:32

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Package RNiftyReg updated to version 1.0.2 with previous version 1.0.0 dated 2012-11-26

Title: Medical image registration using the NiftyReg library
Description: This package provides an R interface to the NiftyReg image registration tools .
Author: Jon Clayden; based on original code by Marc Modat and Pankaj Daga
Maintainer: Jon Clayden

Diff between RNiftyReg versions 1.0.0 dated 2012-11-26 and 1.0.2 dated 2013-01-19

 DESCRIPTION          |    8 ++++----
 MD5                  |   10 +++++-----
 NEWS                 |   13 +++++++++++++
 src/_reg_f3d_sym.cpp |    2 +-
 src/_reg_maths.cpp   |    6 +++---
 src/_reg_tools.h     |   22 ----------------------
 6 files changed, 26 insertions(+), 35 deletions(-)

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Package packHV updated to version 1.1 with previous version 1.0 dated 2012-12-22

Title: A few useful functions for statisticians
Description: Various useful functions for statisticians
Author: Hugo Varet
Maintainer: Hugo Varet

Diff between packHV versions 1.0 dated 2012-12-22 and 1.1 dated 2013-01-19

 DESCRIPTION            |    8 ++++----
 MD5                    |   14 +++++++++-----
 R/convert_factor.R     |only
 R/convert_zero_NA.R    |only
 R/desc.R               |   14 ++++++++++----
 man/convert_factor.Rd  |only
 man/convert_zero_NA.Rd |only
 man/desc.Rd            |    8 +++++---
 man/packHV-package.Rd  |    2 +-
 man/plot_mm.Rd         |    3 ++-
 10 files changed, 31 insertions(+), 18 deletions(-)

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