Title: Everyone's Statistical Software
Diff between Zelig versions 4.1-1 dated 2012-12-22 and 4.1-2 dated 2013-01-24
Description: Zelig is an easy-to-use program that can estimate, and
help interpret the results of, an enormous range of statistical
models. It literally is ``everyone's statistical software''
because Zelig's simple unified framework incorporates everyone
else's (R) code. We also hope it will become ``everyone's
statistical software'' for applications and teaching, and so
have designed Zelig so that anyone can easily use it or add
their programs to it. Zelig also comes with infrastructure
that facilitates the use of any existing method, such as by
allowing multiply imputed data for any model, and mimicking the
program Clarify (for Stata) that takes the raw output of
existing statistical procedures and translates them into
quantities of direct interest.
Author: Matt Owen
Maintainer: Matt Owen
Zelig-4.1-1/Zelig/R/labels.mi.R |only
Zelig-4.1-1/Zelig/R/register.R |only
Zelig-4.1-1/Zelig/R/register.default.R |only
Zelig-4.1-1/Zelig/man/NextFrame.Rd |only
Zelig-4.1-1/Zelig/man/NextLabel.Rd |only
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Zelig-4.1-1/Zelig/man/eval.in.Rd |only
Zelig-4.1-1/Zelig/man/labels.mi.Rd |only
Zelig-4.1-1/Zelig/man/length.mi.Rd |only
Zelig-4.1-1/Zelig/man/make.mi.Rd |only
Zelig-4.1-1/Zelig/man/name.frames.Rd |only
Zelig-4.1-1/Zelig/man/register.Rd |only
Zelig-4.1-1/Zelig/man/register.default.Rd |only
Zelig-4.1-1/Zelig/man/retrieve.factors.Rd |only
Zelig-4.1-1/Zelig/man/robust.hook.Rd |only
Zelig-4.1-2/Zelig/DESCRIPTION | 12 -
Zelig-4.1-2/Zelig/MD5 | 97 ++++-----
Zelig-4.1-2/Zelig/NAMESPACE | 11 -
Zelig-4.1-2/Zelig/R/MCMChook.R | 6
Zelig-4.1-2/Zelig/R/Zelig-package.R | 6
Zelig-4.1-2/Zelig/R/bootfn.default.R | 2
Zelig-4.1-2/Zelig/R/exp.R | 17 -
Zelig-4.1-2/Zelig/R/factor.bayes.R | 7
Zelig-4.1-2/Zelig/R/gamma.gee.R | 30 +-
Zelig-4.1-2/Zelig/R/logit.bayes.R | 5
Zelig-4.1-2/Zelig/R/logit.gee.R | 23 +-
Zelig-4.1-2/Zelig/R/mi.R | 216 ---------------------
Zelig-4.1-2/Zelig/R/mlogit.bayes.R | 25 +-
Zelig-4.1-2/Zelig/R/multi.dataset.R |only
Zelig-4.1-2/Zelig/R/negbinom.R | 14 -
Zelig-4.1-2/Zelig/R/normal.bayes.R | 10
Zelig-4.1-2/Zelig/R/normal.gee.R | 23 +-
Zelig-4.1-2/Zelig/R/oprobit.bayes.R | 5
Zelig-4.1-2/Zelig/R/poisson.bayes.R | 15 +
Zelig-4.1-2/Zelig/R/poisson.gee.R | 23 +-
Zelig-4.1-2/Zelig/R/print.R | 4
Zelig-4.1-2/Zelig/R/probit.bayes.R | 5
Zelig-4.1-2/Zelig/R/probit.gee.R | 27 +-
Zelig-4.1-2/Zelig/R/relogit.R | 15 -
Zelig-4.1-2/Zelig/R/robust.hook.R | 17 -
Zelig-4.1-2/Zelig/R/tobit.R | 16 -
Zelig-4.1-2/Zelig/R/z.R | 27 ++
Zelig-4.1-2/Zelig/R/zelig.R | 113 ++++++-----
Zelig-4.1-2/Zelig/R/zzz.R | 281 ----------------------------
Zelig-4.1-2/Zelig/inst/doc/gamma.pdf |binary
Zelig-4.1-2/Zelig/inst/doc/logit.pdf |binary
Zelig-4.1-2/Zelig/inst/doc/ls.pdf |binary
Zelig-4.1-2/Zelig/inst/doc/manual-bayes.pdf |binary
Zelig-4.1-2/Zelig/inst/doc/manual-gee.pdf |binary
Zelig-4.1-2/Zelig/inst/doc/manual.pdf |binary
Zelig-4.1-2/Zelig/inst/doc/normal.pdf |binary
Zelig-4.1-2/Zelig/inst/doc/twosls.pdf |binary
Zelig-4.1-2/Zelig/man/MCMChook.Rd | 4
Zelig-4.1-2/Zelig/man/robust.gee.hook.Rd |only
Zelig-4.1-2/Zelig/man/z.Rd | 5
Zelig-4.1-2/Zelig/tests/amelia.R |only
Zelig-4.1-2/Zelig/tests/by.R |only
Zelig-4.1-2/Zelig/tests/models-bayes.R | 16 -
Zelig-4.1-2/Zelig/tests/models-gee.R | 59 -----
59 files changed, 307 insertions(+), 829 deletions(-)
Title: Network representations of relationships in data
Diff between qgraph versions 1.1.0 dated 2012-09-16 and 1.2 dated 2013-01-24
Description: The qgraph package can be used to visualize data as
networks.
Author: Sacha Epskamp, Angelique O. J. Cramer, Lourens J. Waldorp,
Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp
DESCRIPTION | 11
MD5 | 87
NAMESPACE | 59
NEWS | 417 +--
R/Cent2EdgeNode.R | 101
R/DrawArrow.R | 62
R/Fade.R |only
R/SelfLoop.R | 112
R/XKCD.R |only
R/addTrans.R |only
R/centrality.R | 244 -
R/getArgs.R |only
R/igraphConversion.R |only
R/isColor.R |only
R/layout.R | 102
R/mapusr2in.R | 81
R/mixCols.R |only
R/qgraph.R | 3952 +++++++++++++++++--------------
R/qgraph.lavaan.R | 1178 ++++-----
R/qgraph.panel.R | 116
R/qgraphGUI.R | 466 +--
R/qgraph_cfa.R | 220 -
R/qgraph_growth.R | 330 +-
R/qgraph_loadings.R | 622 ++--
R/qgraph_sem.R | 1048 ++++----
R/qgraph_semModel.R | 578 ++--
R/qgraph_svg.R | 358 +-
README |only
man/as.igraph.Rd |only
man/big5.Rd | 46
man/big5groups.Rd | 50
man/centrality.Rd | 124
man/plot.qgraph.Rd | 50
man/print.qgraph.Rd | 58
man/qgraph-package.Rd | 70
man/qgraph.Rd | 805 +++---
man/qgraph.animate.Rd | 308 +-
man/qgraph.cfa.Rd | 206 -
man/qgraph.gui.Rd | 104
man/qgraph.lavaan.Rd | 279 +-
man/qgraph.layout.fruchtermanreingold.Rd | 202 -
man/qgraph.panel.Rd | 96
man/qgraph.semModel.Rd | 208 -
man/qgraph_efa.Rd | 106
man/qgraph_loadings.Rd | 122
man/qgraph_pca.Rd | 104
man/qgraph_sem.Rd | 286 +-
man/qgraph_svg.Rd | 138 -
man/summary.qgraph.Rd | 58
49 files changed, 7185 insertions(+), 6379 deletions(-)
Title: Package for Analysis of Space-Time Ecological Series
Diff between pastecs versions 1.3-11 dated 2009-12-18 and 1.3-13 dated 2013-01-24
Description: Regulation, decomposition and analysis of space-time
series. The pastecs library is a PNEC-Art4 and IFREMER (Benoit
Beliaeff
Author: Frederic Ibanez
Maintainer: Philippe Grosjean
DESCRIPTION | 10 ++++----
MD5 |only
NAMESPACE |only
R/extract.regul.R | 4 +--
R/pgleissberg.R | 63 +++++++++++++++++++++------------------------------
R/plot.turnogram.R | 1
R/stat.desc.R | 1
R/tseries.R | 4 ---
inst/doc/pastecs.pdf |binary
pastecs-Ex.R |only
10 files changed, 35 insertions(+), 48 deletions(-)
Title: Tools for providing advice for the Tuna Regional Fisheries
Management Organisations
Diff between kobe versions 1.2 dated 2012-12-10 and 1.2.1 dated 2013-01-24
Description: The package reads in results from a variety of fish stock
assessment packages and summarise them in the Kobe Scientific
advice format used within the tuna Regional Fisheries
Management Organisations (tRFMOs).. Advice summarises the
probabilities of biomass being greater than and fishing
mortality less than the levels that can support maximum
sustainable yield (MSY) for a range of management options.
Author: Laurence Kell
Maintainer: Laurence Kell
kobe-1.2.1/kobe/DESCRIPTION | 8 +-
kobe-1.2.1/kobe/MD5 | 38 ++++++-------
kobe-1.2.1/kobe/NAMESPACE | 2
kobe-1.2.1/kobe/R/kobe-2box.R | 25 +++++---
kobe-1.2.1/kobe/R/kobe-MFCL.R | 12 ++--
kobe-1.2.1/kobe/R/kobe-SAM.R | 25 ++++----
kobe-1.2.1/kobe/R/kobe-aspic.R | 8 +-
kobe-1.2.1/kobe/R/kobe-funcs.R | 24 ++++----
kobe-1.2.1/kobe/R/kobe-read-methods.R | 69 +++---------------------
kobe-1.2.1/kobe/R/kobe-ss3.R | 87 +++++++++++++++++--------------
kobe-1.2.1/kobe/R/kobePhaseMar.R | 23 +++++---
kobe-1.2.1/kobe/inst/doc/kobe.Rnw | 70 +++++++++++++-----------
kobe-1.2.1/kobe/inst/doc/kobe.pdf |binary
kobe-1.2.1/kobe/inst/doc/kobe.tex.backup |only
kobe-1.2.1/kobe/man/kobe-package.Rd | 40 --------------
kobe-1.2.1/kobe/man/kobe2box.Rd | 8 +-
kobe-1.2.1/kobe/man/kobeAspic.Rd | 8 +-
kobe-1.2.1/kobe/man/kobeMFCL.Rd | 6 +-
kobe-1.2.1/kobe/man/kobeSS3.Rd | 10 ++-
kobe-1.2/kobe/inst/doc/611.htm |only
kobe-1.2/kobe/inst/doc/cacert.pem |only
kobe-1.2/kobe/inst/doc/kobeExtras.tex |only
22 files changed, 207 insertions(+), 256 deletions(-)
Title: Color Space Manipulation
Diff between colorspace versions 1.2-0 dated 2012-10-24 and 1.2-1 dated 2013-01-24
Description: Carries out mapping between assorted color spaces
including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV),
CIELAB and polar CIELAB. Qualitative, sequential, and diverging
color palettes based on HCL colors are provided.
Author: Ross Ihaka [aut], Paul Murrell [aut], Kurt Hornik [aut], Jason
C. Fisher [aut], Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 6 ++++++
R/choose_palette.R | 11 ++++++++++-
R/colorspace.R | 6 ------
data/USSouthPolygon.rda |binary
inst/doc/hcl-colors.pdf |binary
7 files changed, 26 insertions(+), 17 deletions(-)
Title: Japanese utility functions and data
Diff between Nippon versions 0.2.2 dated 2013-01-05 and 0.4 dated 2013-01-24
Description: This package provides some Japanese utility functions and
data, which may be useful for Japanese R users.
Author: Susumu Tanimura
Maintainer: Susumu Tanimura
ChangeLog | 29 ++++++++++++++++++++
DESCRIPTION | 9 +++---
MD5 | 71 ++++++++++++++++++++++++++++++++++++++-----------
NAMESPACE | 1
Nippon-Ex.R | 55 +++++++++++++++++++++++++++++++++----
R/kakasi.R | 46 ++++++++++++++++++++++++++++++-
R/romanization.R |only
R/sysdata.rda |binary
R/zzz.R |only
TODO |only
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cleanup.win |only
configure |only
configure.ac |only
configure.win |only
data/jiscolors.rda |binary
data/month.name.jp.rda |binary
inst/doc |only
inst/share |only
man/Nippon-internal.Rd | 22 ++++++++++++++-
man/Nippon-package.Rd | 7 ++--
man/jyear.Rd | 6 ++--
man/kakasi.Rd | 54 +++++++++++++++++++++++++++++++------
man/kata2hira.Rd |only
man/prefectures.Rd | 1
man/romanization.Rd |only
man/sjis2utf8.Rd | 3 +-
man/zen2han.Rd | 3 +-
src |only
tests |only
30 files changed, 262 insertions(+), 45 deletions(-)
Title: R Package for Analyzing Endorsement Experiments
Diff between endorse versions 1.2 dated 2012-02-25 and 1.3 dated 2013-01-24
Description: This R package implements the statistical model proposed
by Bullock, Imai, and Shapiro (2011; Political Analysis) to
analyze endorsement experiments. Endorsement experiments are a
survey methodology for eliciting truthful responses to
sensitive questions. This methodology is helpful when
measuring support for socially sensitive political actors such
as militant groups. The model is fitted with the Markov chain
Monte Carlo algorithm and produces the output containing draws
from the posterior distribution.
Author: Yuki Shiraito
Maintainer: Yuki Shiraito
ChangeLog | 1
DESCRIPTION | 8
MD5 | 28 -
NAMESPACE | 2
R/GeoCount.R |only
R/endorse.R | 638 ++++++++++++++++-------
man/GeoCount.Rd |only
man/endorse.Rd | 282 ++++++++--
src/endorse.c | 1439 ++++++++++++++++++++++++++++++------------------------
src/geodist.c |only
src/geodist.h |only
src/models.c | 1214 ++++++++++++++++++++++++++++-----------------
src/models.h | 2
src/rand.c | 45 +
src/rand.h | 1
src/subroutines.c | 14
src/subroutines.h | 1
17 files changed, 2318 insertions(+), 1357 deletions(-)
Title: Steepness Rcmdr Plug-in
Diff between RcmdrPlugin.steepness versions 0.2 dated 2011-09-02 and 0.3 dated 2013-01-24
More information about RcmdrPlugin.steepness at CRAN
Description: This package provides a GUI for the steepness package, it
is written as an Rcmdr plug-in.
Author: David Leiva
Maintainer: David Leiva
DESCRIPTION | 11 +-
MD5 | 6 -
NAMESPACE |only
NEWS |only
R/RcmdrPlugin.steepness.R | 237 ++++++++++++++++++++++++----------------------
5 files changed, 138 insertions(+), 116 deletions(-)
Permanent link
Title: Slope and level change
Diff between SLC versions 0.2 dated 2010-11-29 and 0.3 dated 2013-01-24
Description: Estimates the slope and level change present in data after
removing phase A trend. Represents graphically the original and
the detrended data.
Author: Antonio Solanas, Rumen Manolov, and Patrick Onghena
Maintainer: Rumen Manolov
DESCRIPTION | 9 +++++----
MD5 |only
2 files changed, 5 insertions(+), 4 deletions(-)
Title: SLC Rcmdr Plug-in
Diff between RcmdrPlugin.SLC versions 0.1 dated 2010-01-19 and 0.2 dated 2013-01-24
More information about RcmdrPlugin.SLC at CRAN
Description: This package provides a GUI for the SLC package, it is
written as an Rcmdr plug-in.
Author: Antonio Solanas
Maintainer: Rumen Manolov
DESCRIPTION | 9 +++---
MD5 | 6 ++--
NAMESPACE | 16 +++---------
R/RcmdrPlugin.SLC.R | 69 ++++++++++++++++++++++++++++++----------------------
4 files changed, 53 insertions(+), 47 deletions(-)
Permanent link
Title: Web Application Framework for R
Diff between shiny versions 0.2.4 dated 2012-12-18 and 0.3.0 dated 2013-01-24
Description: Shiny makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between
inputs and outputs and extensive pre-built widgets make it
possible to build beautiful, responsive, and powerful
applications with minimal effort.
Author: RStudio, Inc.
Maintainer: Winston Chang
DESCRIPTION | 14 -
MD5 | 43 +++--
NAMESPACE | 17 +-
NEWS | 41 ++++
R/bootstrap.R | 20 ++
R/map.R | 9 -
R/react.R | 65 +++----
R/reactives.R | 374 ++++++++++++++++++++++++++++++++------------
R/run-url.R |only
R/shiny.R | 74 ++------
R/shinyui.R | 10 -
R/shinywrappers.R | 35 +++-
R/tags.R | 48 ++---
inst/tests |only
inst/www/shared/shiny.js | 4
man/isolate.Rd |only
man/plotOutput.Rd | 5
man/reactivePrint.Rd | 87 +++++++++-
man/reactiveText.Rd | 69 ++++++++
man/reactiveValues.Rd |only
man/reactiveValuesToList.Rd |only
man/runGist.Rd | 6
man/runGitHub.Rd |only
man/runUrl.Rd |only
tests |only
25 files changed, 648 insertions(+), 273 deletions(-)
Title: Tools for analysing OmniLog(R) Phenotype Microarray data
Diff between opm versions 0.7-0 dated 2012-10-26 and 0.8-0 dated 2013-01-24
Description: Tools for analysing OmniLog(R) and Microstation Phenotype
Microarray (PM) data as produced by the devices distributed by
BiOLOG Inc., including plotting, aggregating (estimating curve
parameters), comparing and discretizing PM data, creating
phylogenetic formats and reports for taxonomic journals,
integrating metadata, using the YAML format for the storage of
data and metadata, and batch conversion of large numbers of
files.
Author: Markus Goeker, with contributions by Lea A.I. Vaas, Benjamin
Hofner, Johannes Sikorski, Nora Buddruhs and Anne Fiebig
Maintainer: Markus Goeker
opm-0.7-0/opm/man/check_discrete.Rd |only
opm-0.7-0/opm/man/indexes.Rd |only
opm-0.7-0/opm/man/join_discrete.Rd |only
opm-0.7-0/opm/man/map_gapmode.Rd |only
opm-0.7-0/opm/man/other_slots.Rd |only
opm-0.7-0/opm/man/phylo_char_mat.Rd |only
opm-0.7-0/opm/man/phylo_footer.Rd |only
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opm-0.7-0/opm/man/repair_names.Rd |only
opm-0.7-0/opm/man/test_file_dir.Rd |only
opm-0.8-0/opm/ChangeLog | 138 +
opm-0.8-0/opm/DESCRIPTION | 46
opm-0.8-0/opm/MD5 | 310 ++-
opm-0.8-0/opm/NAMESPACE | 30
opm-0.8-0/opm/NEWS | 57
opm-0.8-0/opm/R/aggregation.R | 248 +-
opm-0.8-0/opm/R/auxiliary.R | 1565 +++++++-----------
opm-0.8-0/opm/R/classes.R | 546 +++++-
opm-0.8-0/opm/R/combination.R | 164 +
opm-0.8-0/opm/R/constants.R | 310 ---
opm-0.8-0/opm/R/conversion.R | 562 +++---
opm-0.8-0/opm/R/data.R | 30
opm-0.8-0/opm/R/discretization.R | 192 +-
opm-0.8-0/opm/R/getter.R | 658 ++++---
opm-0.8-0/opm/R/imports.R |only
opm-0.8-0/opm/R/io.R | 513 +++---
opm-0.8-0/opm/R/kmeans.R | 23
opm-0.8-0/opm/R/metadata.R | 124 -
opm-0.8-0/opm/R/naming.R | 226 ++
opm-0.8-0/opm/R/package.R |only
opm-0.8-0/opm/R/phylogeny.R | 1283 ++++++++-------
opm-0.8-0/opm/R/plate-map.R |only
opm-0.8-0/opm/R/plotting.R | 854 ++++++----
opm-0.8-0/opm/R/substrate-info.R | 1679 ++++++++++----------
opm-0.8-0/opm/R/testing.R | 94 -
opm-0.8-0/opm/R/well-map.R | 1209 +++++++-------
opm-0.8-0/opm/data/vaas_1.rda |binary
opm-0.8-0/opm/data/vaas_4.rda |binary
opm-0.8-0/opm/inst/auxiliary |only
opm-0.8-0/opm/inst/doc/opm.Rnw | 225 +-
opm-0.8-0/opm/inst/doc/opm.pdf |binary
opm-0.8-0/opm/inst/scripts/run_opm.R | 103 -
opm-0.8-0/opm/inst/testdata/Example_Ecoplate.csv.xz |only
opm-0.8-0/opm/inst/tests |only
opm-0.8-0/opm/man/OPM.Rd | 25
opm-0.8-0/opm/man/OPMA.Rd | 10
opm-0.8-0/opm/man/OPMD.Rd | 11
opm-0.8-0/opm/man/OPMS.Rd | 25
opm-0.8-0/opm/man/OPMX.Rd | 4
opm-0.8-0/opm/man/WMD.Rd | 10
opm-0.8-0/opm/man/YAML_VIA_LIST.Rd | 6
opm-0.8-0/opm/man/aggr_settings.Rd | 10
opm-0.8-0/opm/man/aggregated.Rd | 5
opm-0.8-0/opm/man/anyDuplicated.Rd | 2
opm-0.8-0/opm/man/attach_attr.Rd | 4
opm-0.8-0/opm/man/batch_opm_to_yaml.Rd | 144 +
opm-0.8-0/opm/man/batch_process.Rd | 2
opm-0.8-0/opm/man/bracket.Rd | 2
opm-0.8-0/opm/man/c.Rd | 15
opm-0.8-0/opm/man/ci_plot.Rd | 10
opm-0.8-0/opm/man/collect_template.Rd | 59
opm-0.8-0/opm/man/csv_data.Rd | 14
opm-0.8-0/opm/man/default_color_regions.Rd | 2
opm-0.8-0/opm/man/dim.Rd | 2
opm-0.8-0/opm/man/disc_settings.Rd | 13
opm-0.8-0/opm/man/discrete.Rd | 32
opm-0.8-0/opm/man/discretized.Rd | 6
opm-0.8-0/opm/man/do_aggr.Rd | 84 -
opm-0.8-0/opm/man/do_disc.Rd | 87 -
opm-0.8-0/opm/man/duplicated.Rd | 6
opm-0.8-0/opm/man/extract.Rd | 8
opm-0.8-0/opm/man/extract_curve_params.Rd | 9
opm-0.8-0/opm/man/fast_estimate.Rd | 4
opm-0.8-0/opm/man/filename.Rd | 8
opm-0.8-0/opm/man/find_positions.Rd | 8
opm-0.8-0/opm/man/find_substrate.Rd | 2
opm-0.8-0/opm/man/flatten.Rd | 22
opm-0.8-0/opm/man/format.Rd |only
opm-0.8-0/opm/man/gen_iii.Rd | 27
opm-0.8-0/opm/man/glob_to_regex.Rd | 2
opm-0.8-0/opm/man/has_aggr.Rd | 5
opm-0.8-0/opm/man/has_disc.Rd | 6
opm-0.8-0/opm/man/heat_map.Rd | 23
opm-0.8-0/opm/man/hours.Rd | 2
opm-0.8-0/opm/man/html_args.Rd |only
opm-0.8-0/opm/man/include_metadata.Rd | 6
opm-0.8-0/opm/man/infix.largeq.Rd | 2
opm-0.8-0/opm/man/infix.q.Rd | 2
opm-0.8-0/opm/man/initialize.Rd | 18
opm-0.8-0/opm/man/is_constant.Rd | 20
opm-0.8-0/opm/man/last.Rd | 2
opm-0.8-0/opm/man/length.Rd | 2
opm-0.8-0/opm/man/level_plot.Rd | 5
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opm-0.8-0/opm/man/map_metadata.Rd | 2
opm-0.8-0/opm/man/map_values.Rd | 45
opm-0.8-0/opm/man/map_well_names.Rd | 5
opm-0.8-0/opm/man/max.Rd | 2
opm-0.8-0/opm/man/measurements.Rd | 2
opm-0.8-0/opm/man/merge.Rd | 5
opm-0.8-0/opm/man/metadata.Rd | 2
opm-0.8-0/opm/man/metadata.set.Rd | 16
opm-0.8-0/opm/man/metadata_chars.Rd | 2
opm-0.8-0/opm/man/minmax.Rd | 2
opm-0.8-0/opm/man/objects_for_testing.Rd |only
opm-0.8-0/opm/man/opm.package.Rd | 49
opm-0.8-0/opm/man/opm_files.Rd | 33
opm-0.8-0/opm/man/opm_opt.Rd | 63
opm-0.8-0/opm/man/opm_problems.Rd | 4
opm-0.8-0/opm/man/opm_string.Rd |only
opm-0.8-0/opm/man/opma_problems.Rd | 11
opm-0.8-0/opm/man/opms.function.Rd | 10
opm-0.8-0/opm/man/param_names.Rd | 3
opm-0.8-0/opm/man/phylo_data.Rd | 259 ++-
opm-0.8-0/opm/man/plate_type.Rd | 21
opm-0.8-0/opm/man/plus.Rd | 12
opm-0.8-0/opm/man/position.Rd | 7
opm-0.8-0/opm/man/print.Rd |only
opm-0.8-0/opm/man/radial_plot.Rd | 19
opm-0.8-0/opm/man/ranging.Rd | 3
opm-0.8-0/opm/man/read_microstation_opm.Rd |only
opm-0.8-0/opm/man/read_new_opm.Rd | 3
opm-0.8-0/opm/man/read_old_opm.Rd | 5
opm-0.8-0/opm/man/read_opm.Rd | 39
opm-0.8-0/opm/man/read_opm_yaml.Rd | 21
opm-0.8-0/opm/man/read_single_opm.Rd | 52
opm-0.8-0/opm/man/reduce_to_mode.Rd |only
opm-0.8-0/opm/man/repair_na_strings.Rd | 11
opm-0.8-0/opm/man/repair_oth.Rd | 13
opm-0.8-0/opm/man/safe_labels.Rd | 7
opm-0.8-0/opm/man/select.Rd | 69
opm-0.8-0/opm/man/select_colors.Rd | 5
opm-0.8-0/opm/man/separate.Rd | 6
opm-0.8-0/opm/man/seq.Rd | 2
opm-0.8-0/opm/man/setup_time.Rd | 8
opm-0.8-0/opm/man/show.Rd | 28
opm-0.8-0/opm/man/sort.Rd | 2
opm-0.8-0/opm/man/source_location.Rd | 6
opm-0.8-0/opm/man/subset.Rd |only
opm-0.8-0/opm/man/substrate_info.Rd | 38
opm-0.8-0/opm/man/summary.Rd | 20
opm-0.8-0/opm/man/testfile_dir.Rd |only
opm-0.8-0/opm/man/tidy.Rd | 16
opm-0.8-0/opm/man/to_grofit_data.Rd | 6
opm-0.8-0/opm/man/to_grofit_time.Rd | 4
opm-0.8-0/opm/man/to_sentence.Rd |only
opm-0.8-0/opm/man/to_yaml.Rd | 27
opm-0.8-0/opm/man/try_select_colors.Rd |only
opm-0.8-0/opm/man/unique.Rd | 2
opm-0.8-0/opm/man/update.Rd |only
opm-0.8-0/opm/man/update_settings_list.Rd |only
opm-0.8-0/opm/man/vaas_1.Rd | 2
opm-0.8-0/opm/man/vaas_4.Rd | 6
opm-0.8-0/opm/man/well.Rd | 4
opm-0.8-0/opm/man/well_to_substrate.Rd | 2
opm-0.8-0/opm/man/wells.Rd | 9
opm-0.8-0/opm/man/xy_plot.Rd | 36
opm-0.8-0/opm/tests |only
opm-0.8-0/opm/vignettes/opm.Rnw | 225 +-
opm-0.8-0/opm/vignettes/opm_fig_3.pdf |binary
opm-0.8-0/opm/vignettes/opm_fig_4.pdf |binary
162 files changed, 7475 insertions(+), 5738 deletions(-)
Title: Multi-model inference
Diff between MuMIn versions 1.8.0 dated 2012-11-22 and 1.9.0 dated 2013-01-24
Description: Model selection and model averaging based on information
criteria (AICc and alike).
Author: Kamil Bartoń
Maintainer: Kamil Bartoń
MuMIn-1.8.0/MuMIn/R/class-gamm.R |only
MuMIn-1.8.0/MuMIn/R/class-gee.R |only
MuMIn-1.8.0/MuMIn/R/class-mcmc.R |only
MuMIn-1.8.0/MuMIn/R/class-unmarkedFit.R |only
MuMIn-1.8.0/MuMIn/R/misc-utils.R |only
MuMIn-1.8.0/MuMIn/R/model-utils.R |only
MuMIn-1.8.0/MuMIn/R/r.squared.R |only
MuMIn-1.9.0/MuMIn/DESCRIPTION | 10
MuMIn-1.9.0/MuMIn/MD5 | 99 ++++----
MuMIn-1.9.0/MuMIn/NAMESPACE | 52 +++-
MuMIn-1.9.0/MuMIn/NEWS | 50 +++-
MuMIn-1.9.0/MuMIn/R/AICc.R | 9
MuMIn-1.9.0/MuMIn/R/Cp.R | 28 +-
MuMIn-1.9.0/MuMIn/R/DIC.R |only
MuMIn-1.9.0/MuMIn/R/Weights.R | 9
MuMIn-1.9.0/MuMIn/R/coefTable.R | 98 ++++++++
MuMIn-1.9.0/MuMIn/R/coeffs.R | 46 +++
MuMIn-1.9.0/MuMIn/R/dredge.R | 133 +++++++----
MuMIn-1.9.0/MuMIn/R/ext-gamm.R |only
MuMIn-1.9.0/MuMIn/R/ext-mark.R |only
MuMIn-1.9.0/MuMIn/R/ext.R | 289 +++++++++---------------
MuMIn-1.9.0/MuMIn/R/formulas.R |only
MuMIn-1.9.0/MuMIn/R/getAllTerms.R | 155 ++++++++++++
MuMIn-1.9.0/MuMIn/R/importance.R | 16 +
MuMIn-1.9.0/MuMIn/R/init.R | 4
MuMIn-1.9.0/MuMIn/R/is.R |only
MuMIn-1.9.0/MuMIn/R/makeArgs.R | 77 ++++++
MuMIn-1.9.0/MuMIn/R/methods-logLik.R | 83 ++++++
MuMIn-1.9.0/MuMIn/R/methods-nobs.R | 47 +++
MuMIn-1.9.0/MuMIn/R/model.avg.R | 3
MuMIn-1.9.0/MuMIn/R/model.selection.R | 20 +
MuMIn-1.9.0/MuMIn/R/par.avg.R | 4
MuMIn-1.9.0/MuMIn/R/pdredge.R | 138 +++++++----
MuMIn-1.9.0/MuMIn/R/quasiLik.R | 112 ++++-----
MuMIn-1.9.0/MuMIn/R/r.squaredGLMM.R |only
MuMIn-1.9.0/MuMIn/R/r.squaredLR.R |only
MuMIn-1.9.0/MuMIn/R/utils-misc.R |only
MuMIn-1.9.0/MuMIn/R/utils-models.R |only
MuMIn-1.9.0/MuMIn/demo/00Index | 2
MuMIn-1.9.0/MuMIn/demo/dredge.varying.R |only
MuMIn-1.9.0/MuMIn/inst/TODO | 2
MuMIn-1.9.0/MuMIn/man/ICs.Rd | 9
MuMIn-1.9.0/MuMIn/man/MuMIn-package.Rd | 3
MuMIn-1.9.0/MuMIn/man/QAIC.Rd | 2
MuMIn-1.9.0/MuMIn/man/QIC.Rd | 23 +
MuMIn-1.9.0/MuMIn/man/dredge.Rd | 112 +++++----
MuMIn-1.9.0/MuMIn/man/importance.Rd | 12
MuMIn-1.9.0/MuMIn/man/manip-formula.Rd |only
MuMIn-1.9.0/MuMIn/man/mod.sel.Rd | 7
MuMIn-1.9.0/MuMIn/man/model-utils.Rd | 21 +
MuMIn-1.9.0/MuMIn/man/model.avg.Rd | 5
MuMIn-1.9.0/MuMIn/man/par.avg.Rd | 5
MuMIn-1.9.0/MuMIn/man/pdredge.Rd | 26 +-
MuMIn-1.9.0/MuMIn/man/r.squaredGLMM.Rd |only
MuMIn-1.9.0/MuMIn/man/r.squaredLR.Rd | 77 +++---
MuMIn-1.9.0/MuMIn/man/subset.model.selection.Rd | 32 +-
MuMIn-1.9.0/MuMIn/man/supported-classes.Rd | 11
MuMIn-1.9.0/MuMIn/tests/classes.R | 16 -
MuMIn-1.9.0/MuMIn/tests/misc-tests.R | 1
MuMIn-1.9.0/MuMIn/tests/unmarked.R | 7
60 files changed, 1287 insertions(+), 568 deletions(-)
Title: Color Schemes for Dichromats
Diff between dichromat versions 1.2-4 dated 2012-01-06 and 2.0-0 dated 2013-01-24
Description: Collapse red-green or green-blue distinctions to simulate
the effects of different types of color-blindness.
Author: Thomas Lumley [aut, cre], Ken Knoblauch [ctb], Scott Waichler
[ctb], Achim Zeileis [ctb]
Maintainer: Thomas Lumley
DESCRIPTION | 27 ++++++---
MD5 | 14 ++--
R/dichromat.R | 51 +++++++++---------
R/sysdata.rda |binary
data/dalton.rda |binary
man/colorschemes.Rd | 50 ++++++++++-------
man/dalton.Rd | 77 +++++++++++++++++++++------
man/dichromat.Rd | 146 +++++++++++++++++++++++++++++++---------------------
8 files changed, 232 insertions(+), 133 deletions(-)
Title: Comparison of groups
Diff between cg versions 0.9-5 dated 2012-08-13 and 0.9-6 dated 2013-01-24
Description: cg is comprehensive data analysis software, and stands for
"compare groups." Its genesis and evolution are driven by
common needs to compare administrations, conditions, etc. in
medicine research & development. The current version provides
comparisons of both unpaired and paired samples, i.e. a linear
model with one factor of at least two levels, or a paired data.
Good data graphs, modern statistical methods, and useful
displays of results are emphasized.
Author: Bill Pikounis and John Oleynick
Maintainer: Bill Pikounis
cg-0.9-5/cg/inst/CHANGES |only
cg-0.9-6/cg/DESCRIPTION | 16
cg-0.9-6/cg/MD5 | 59 +--
cg-0.9-6/cg/NAMESPACE | 67 +--
cg-0.9-6/cg/R/generics.R | 57 +--
cg-0.9-6/cg/R/p00ReadInOneFactorData.R | 36 +-
cg-0.9-6/cg/R/p01FitOneFactorData.R | 20 -
cg-0.9-6/cg/R/p02DescriptiveOneFactorData.R | 6
cg-0.9-6/cg/R/p03FormalOneFactorData.R | 96 ++---
cg-0.9-6/cg/R/p04DiagnosticsOneFactorData.R | 60 +--
cg-0.9-6/cg/R/p05SampleSizeOneFactorData.R | 68 ++-
cg-0.9-6/cg/R/utilities.R | 180 +++++++---
cg-0.9-6/cg/R/valid.R | 12
cg-0.9-6/cg/R/version.R | 2
cg-0.9-6/cg/inst/CITATION |only
cg-0.9-6/cg/inst/NEWS |only
cg-0.9-6/cg/man/boxplot.cgOneFactorData.Rd | 2
cg-0.9-6/cg/man/cg-package.Rd | 19 -
cg-0.9-6/cg/man/cgInternalUtilities.Rd | 10
cg-0.9-6/cg/man/comparisonsGraph.cgOneFactorComparisonsTable.Rd | 5
cg-0.9-6/cg/man/comparisonsGraphGeneric.Rd | 14
cg-0.9-6/cg/man/comparisonsTable.Rd | 12
cg-0.9-6/cg/man/descriptiveTable.Rd | 7
cg-0.9-6/cg/man/descriptiveTable.cgOneFactorData.Rd | 2
cg-0.9-6/cg/man/downweightedTable.Rd | 16
cg-0.9-6/cg/man/fit.Rd | 11
cg-0.9-6/cg/man/prepare.Rd | 21 -
cg-0.9-6/cg/man/prepareCGOneFactorData.Rd | 6
cg-0.9-6/cg/man/samplesizeGraph.Rd | 5
cg-0.9-6/cg/man/samplesizeTable.Rd | 12
cg-0.9-6/cg/man/samplesizeTable.cgOneFactorFit.Rd | 6
cg-0.9-6/cg/man/showObj.Rd | 4
32 files changed, 484 insertions(+), 347 deletions(-)