Title: R/Weka interface jars
Diff between RWekajars versions 3.7.7-2 dated 2012-11-30 and 3.7.8-1 dated 2013-01-26
Description: External jars required for package RWeka.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik
DESCRIPTION | 13 +++++++------
MD5 | 4 ++--
inst/java/weka.jar |binary
3 files changed, 9 insertions(+), 8 deletions(-)
Title: R/Weka interface
Diff between RWeka versions 0.4-13 dated 2012-11-30 and 0.4-14 dated 2013-01-26
Description: An R interface to Weka (Version 3.7.8). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package RWeka contains the interface code, the
Weka jar is in a separate package RWekajars. For more
information on Weka see http://www.cs.waikato.ac.nz/~ml/weka/.
Author: Kurt Hornik [aut, cre], Christian Buchta [ctb], Torsten Hothorn
[ctb], Alexandros Karatzoglou [ctb], David Meyer [ctb], Achim
Zeileis [ctb]
Maintainer: Kurt Hornik
RWeka-0.4-13/RWeka/COPYRIGHTS |only
RWeka-0.4-14/RWeka/CHANGELOG | 13 +++++++++++++
RWeka-0.4-14/RWeka/DESCRIPTION | 24 +++++++++++++++---------
RWeka-0.4-14/RWeka/MD5 | 9 ++++-----
RWeka-0.4-14/RWeka/inst/doc/RWeka.pdf |binary
RWeka-0.4-14/RWeka/inst/java/RWeka.jar |binary
6 files changed, 32 insertions(+), 14 deletions(-)
Title: Genetic diversity partition statistics and Informative locus
selection using Fst, Gst, Dest(Jost Chao) G'st and In.
Diff between diveRsity versions 1.3.6 dated 2013-01-04 and 1.4.2 dated 2013-01-26
Description: diveRsity is a package which allows the calculation of
both genetic diversity partition statistics, genetic
differentiation statistics and locus informativeness for
ancestry assignment. It also provides users with various option
to calculate bootstrapped 95% confidence intervals both across
loci, for pairwise population comparisons and to plot these
results interactively. V1.2 and up provides parallel computing
capabilities and pairwise results without bootstrapping. Weir
and Cockerham's 1984 F-statistics are now also calculated.
Various plotting features are also provided. Chi-square tests
of genetic heterogeneity are also provided.
Author: Kevin Keenan,
Maintainer: Kevin Keenan
diveRsity-1.3.6/diveRsity/R/diveRsity_v1.3.6.R |only
diveRsity-1.3.6/diveRsity/inst/doc/diveRsity_v1.3.6_help.Rnw |only
diveRsity-1.3.6/diveRsity/inst/doc/diveRsity_v1.3.6_help.pdf |only
diveRsity-1.4.2/diveRsity/DESCRIPTION | 8 -
diveRsity-1.4.2/diveRsity/MD5 | 19 +-
diveRsity-1.4.2/diveRsity/NAMESPACE | 3
diveRsity-1.4.2/diveRsity/R/diveRsity_v1.4.2.R |only
diveRsity-1.4.2/diveRsity/inst/diveRsity-online/server.R | 74 ++++++++---
diveRsity-1.4.2/diveRsity/inst/diveRsity-online/ui.R | 7 +
diveRsity-1.4.2/diveRsity/inst/doc/diveRsity_v1.4.2_help.Rnw |only
diveRsity-1.4.2/diveRsity/inst/doc/diveRsity_v1.4.2_help.pdf |only
diveRsity-1.4.2/diveRsity/man/difPlot.rd | 2
diveRsity-1.4.2/diveRsity/man/div.part.Rd | 12 +
diveRsity-1.4.2/diveRsity/man/divBasic.Rd |only
14 files changed, 88 insertions(+), 37 deletions(-)
Title: Package for Periodic Time Series Analysis
Diff between perARMA versions 1.2 dated 2013-01-11 and 1.3 dated 2013-01-26
Description: The package includes procedures for identification, model
fitting and estimation for time series with periodic structure.
Additionally procedures for simulation of periodic processes
and real data sets are included.
Author: Anna Dudek, Harry Hurd and Wioletta Wojtowicz
Maintainer: Wioletta Wojtowicz
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
R/parma_ident.R | 24 ++----------------------
man/acfpacf.Rd | 5 +++--
man/loglikec.Rd | 8 ++++----
man/loglikef.Rd | 8 ++++----
man/parmaf.Rd | 8 ++++----
man/parmaresid.Rd | 6 +++---
man/perARMA-package.Rd | 4 ++--
man/peracf.Rd | 22 +++++++++++-----------
10 files changed, 46 insertions(+), 65 deletions(-)
Title: Access to Amazon Mechanical Turk Requester API via R
Diff between MTurkR versions 0.2 dated 2012-10-27 and 0.3 dated 2013-01-26
Description: Provides access to the Amazon Mechanical Turk (MTurk)
Requester API via authenticated HTTP requests executed with the
RCurl package and a number of functions to translate API calls
into R data structures (using the XML package).
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper
DESCRIPTION | 8 -
MD5 | 177 +++++++++++++++----------------
NEWS | 25 ++++
R/AnswerKeyToDataFrame.R |only
R/AssignmentsToDataFrame.R | 9 -
R/BlockWorker.R | 9 -
R/BlockWorkers.R | 9 -
R/ContactWorker.R | 171 +++++++++++++++++++++--------
R/ContactWorkers.R | 171 +++++++++++++++++++++--------
R/CreateQualificationType.R | 23 ++--
R/DisableHIT.R | 7 -
R/ExpireHIT.R | 7 -
R/ExtendHIT.R | 10 -
R/GenerateAnswerKey.R | 61 ++++------
R/GenerateQualificationRequirement.R | 12 +-
R/GetAssignment.R | 35 +++++-
R/GetAssignments.R | 35 +++++-
R/GetBlockedWorkers.R | 8 +
R/GetBonuses.R | 8 -
R/GetStatistic.R | 5
R/GetWorkerStatistic.R | 4
R/GrantBonus.R | 2
R/GrantQualification.R | 6 -
R/GrantQualifications.R | 6 -
R/HITsToDataFrame.R | 2
R/QualificationRequirementsToDataFrame.R | 11 +
R/QuestionFormToDataFrame.R | 17 ++
R/RejectAssignment.R | 6 -
R/RejectAssignments.R | 6 -
R/RejectQualification.R | 6 -
R/RejectQualifications.R | 6 -
R/RevokeQualification.R | 4
R/RevokeQualifications.R | 4
R/SetHITAsReviewing.R | 6 -
R/UnblockWorker.R | 6 -
R/UnblockWorkers.R | 6 -
R/UpdateQualificationScore.R | 7 -
R/UpdateQualificationType.R | 2
R/assignment.R | 35 +++++-
R/assignments.R | 35 +++++-
R/block.R | 9 -
R/blockedworkers.R | 8 +
R/bonus.R | 2
R/bonuses.R | 8 -
R/changehittype.R | 8 -
R/changehittype_1.R | 8 -
R/contact.R | 171 +++++++++++++++++++++--------
R/create.R | 6 -
R/createhit.R | 6 -
R/createhit_1.R | 6 -
R/createqual.R | 23 ++--
R/credentials.R | 14 +-
R/disable.R | 7 -
R/disposehit.R | 6 -
R/disposehit_1.R | 6 -
R/expire.R | 7 -
R/extend.R | 10 -
R/gethit.R | 20 ++-
R/gethit_1.R | 20 ++-
R/grantqual.R | 6 -
R/hit.R | 20 ++-
R/paybonus.R | 2
R/reject.R | 6 -
R/rejectrequest.R | 6 -
R/request.R | 5
R/reviewing.R | 6 -
R/revokequal.R | 4
R/searchhits.R | 6 -
R/searchhits_1.R | 6 -
R/statistic.R | 5
R/unblock.R | 6 -
R/updatequal.R | 2
R/updatequalscore.R | 7 -
R/workerstatistic.R | 4
man/BlockWorker.Rd | 2
man/ChangeHITType.Rd | 4
man/ContactWorker.Rd | 7 -
man/CreateHIT.Rd | 2
man/CreateQualificationType.Rd | 2
man/GenerateAnswerKey.Rd | 9 -
man/GenerateQualificationRequirement.Rd | 4
man/GetAssignment.Rd | 3
man/GetHIT.Rd | 2
man/GetStatistic.Rd | 13 +-
man/MTurkR-package.Rd | 4
man/SearchHITs.Rd | 2
man/SendTestEventNotification.Rd | 2
man/SetHITTypeNotification.Rd | 2
man/UpdateQualificationType.Rd | 2
man/XMLToDataFrame.Rd | 2
90 files changed, 943 insertions(+), 522 deletions(-)
Title: Single-Case Visual Analysis
Diff between SCVA versions 0.0 dated 2012-03-03 and 0.1 dated 2013-01-26
Description: A package to make graphical representations of single case
data and to transform graphical displays back to raw data. The
package also includes tools for visually analyzing single-case
data, by displaying central location, variability and trend.
Author: Isis Bulte and Patrick Onghena
Maintainer: Isis Bulte
DESCRIPTION | 10 ++++-----
MD5 | 18 ++++++++--------
NAMESPACE | 1
R/graph.extract.R | 55 +++++++++++++++++++++++++++++++++++++++++++++++++--
man/AB.Rd | 2 -
man/graph.CL.Rd | 2 -
man/graph.Rd | 2 -
man/graph.TREND.Rd | 2 -
man/graph.VAR.Rd | 2 -
man/graph.extract.Rd | 6 +++--
10 files changed, 76 insertions(+), 24 deletions(-)
Title: Read and Write ESRI Shapefiles
Diff between shapefiles versions 0.6 dated 2006-11-29 and 0.7 dated 2013-01-26
Description: Functions to read and write ESRI shapefiles
Author: Ben Stabler
Maintainer: Ben Stabler
DESCRIPTION | 22 ++++++++++++----------
MD5 |only
NAMESPACE |only
3 files changed, 12 insertions(+), 10 deletions(-)
Title: Read and Write to an EMME/2 databank
Diff between emme2 versions 0.8 dated 2007-08-14 and 0.9 dated 2013-01-26
Description: This package includes functions to read and write to an
EMME/2 databank
Author: Ben Stabler
Maintainer: Ben Stabler
DESCRIPTION | 24 +++++++------
MD5 |only
NAMESPACE |only
R/emme2.R | 103 ++++++++++++++++++++++++++++++++++++++++++++++++++++-------
man/emme2.Rd | 42 ++++++++++++++++++++----
5 files changed, 140 insertions(+), 29 deletions(-)
Title: 3D visualization device system (OpenGL)
Diff between rgl versions 0.92.894 dated 2012-10-22 and 0.93.921 dated 2013-01-26
Description: 3D visualization device (OpenGL)
Author: Daniel Adler
Maintainer: Duncan Murdoch
rgl-0.92.894/rgl/src/TODO.txt |only
rgl-0.93.921/rgl/DESCRIPTION | 6 +--
rgl-0.93.921/rgl/MD5 | 65 +++++++++++++++++++--------------
rgl-0.93.921/rgl/NAMESPACE | 14 +++++--
rgl-0.93.921/rgl/R/animate.R | 7 ++-
rgl-0.93.921/rgl/R/axes.R | 4 +-
rgl-0.93.921/rgl/R/cylinder3d.R | 20 +++++++---
rgl-0.93.921/rgl/R/device.R | 15 +++++--
rgl-0.93.921/rgl/R/getscene.R |only
rgl-0.93.921/rgl/R/obj.R |only
rgl-0.93.921/rgl/R/plot3d.R | 4 +-
rgl-0.93.921/rgl/R/ply.R |only
rgl-0.93.921/rgl/R/scene.R | 21 +++++++---
rgl-0.93.921/rgl/R/selectpoints3d.R |only
rgl-0.93.921/rgl/R/stl.R |only
rgl-0.93.921/rgl/R/webGL.R | 59 ++++++++++++++++-------------
rgl-0.93.921/rgl/inst/NEWS | 18 ++++++++-
rgl-0.93.921/rgl/man/attributes.Rd | 6 ++-
rgl-0.93.921/rgl/man/axes3d.Rd | 3 +
rgl-0.93.921/rgl/man/cylinder3d.Rd | 15 +++++++
rgl-0.93.921/rgl/man/persp3d.Rd | 3 +
rgl-0.93.921/rgl/man/play3d.Rd | 3 +
rgl-0.93.921/rgl/man/plot3d.Rd | 3 +
rgl-0.93.921/rgl/man/readSTL.Rd |only
rgl-0.93.921/rgl/man/scene3d.Rd |only
rgl-0.93.921/rgl/man/select3d.Rd | 2 -
rgl-0.93.921/rgl/man/selectpoints3d.Rd |only
rgl-0.93.921/rgl/man/spin3d.Rd | 29 +++++++++++++-
rgl-0.93.921/rgl/man/writeOBJ.Rd |only
rgl-0.93.921/rgl/man/writePLY.Rd |only
rgl-0.93.921/rgl/man/writeWebGL.Rd | 8 ++++
rgl-0.93.921/rgl/src/BBoxDeco.cpp | 2 -
rgl-0.93.921/rgl/src/gui.hpp | 5 +-
rgl-0.93.921/rgl/src/osx/osxgui.mm | 25 ++++++++++++
rgl-0.93.921/rgl/src/pretty.c |only
rgl-0.93.921/rgl/src/pretty.h |only
rgl-0.93.921/rgl/src/rglview.cpp | 10 ++++-
rgl-0.93.921/rgl/src/rglview.h | 4 +-
rgl-0.93.921/rgl/src/win32gui.cpp | 4 +-
rgl-0.93.921/rgl/src/x11gui.cpp | 15 ++++++-
40 files changed, 269 insertions(+), 101 deletions(-)
Title: Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences.
Diff between mhsmm versions 0.4.6 dated 2012-09-03 and 0.4.8 dated 2013-01-26
Description: Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences. Suitable for equidistant time series data, with
multivariate and/or missing data.
Author: Jared O'Connell
Maintainer: Jared O'Connell
ChangeLog | 8 ++++
DESCRIPTION | 8 ++--
MD5 | 19 ++++++-----
R/hsmm_functions.R | 68 ++++++++++++++++++++++-------------------
inst/doc/DHMM2.pdf |binary
man/predict.hmm.Rd | 2 -
man/predict.hsmm.Rd | 2 -
man/predict.hsmmspec.Rd | 2 -
vignettes/DHMM1.tex |only
vignettes/fig/dhmm-clsfig1.pdf |binary
vignettes/fig/dhmm-clsfig2.pdf |binary
11 files changed, 63 insertions(+), 46 deletions(-)
Title: Sudoku Puzzle Generator and Solver
Diff between sudoku versions 2.4 dated 2012-11-01 and 2.5 dated 2013-01-26
Description: Generates, plays, and solves Sudoku puzzles. The GUI
playSudoku() needs package "tkrplot" if you are not on Windows.
Author: David Brahm
Maintainer: David Brahm
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/playSudoku.R | 4 ++--
3 files changed, 8 insertions(+), 8 deletions(-)
Title: LaTeX code for well-formatted regression and summary statistics
tables
Diff between stargazer versions 2.0.1 dated 2013-01-11 and 3.0 dated 2013-01-26
Description: Produces LaTeX code for well-formatted tables that hold
regression analysis results from several models side-by-side,
as well as summary statistics.
Author: Marek Hlavac
Maintainer: Marek Hlavac
DESCRIPTION | 8
MD5 | 18
R/stargazer-internal.R | 1157 ++++++++++++++++++++++++++++------------
R/stargazer.R | 10
inst |only
man/stargazer.Rd | 69 +-
man/stargazer_acknowledge.Rd | 38 -
man/stargazer_news.Rd |only
man/stargazer_stat_code_list.Rd | 2
vignettes |only
10 files changed, 903 insertions(+), 399 deletions(-)
Title: Variable metric nonlinear function minimization with bounds
constraints
Diff between Rvmmin versions 2011-5.091 dated 2011-10-18 and 2013-1.25 dated 2013-01-26
Description: Variable metric nonlinear function minimization with
bounds constraints
Author: John C. Nash
Maintainer: John C. Nash
Rvmmin-2011-5.091/Rvmmin/R/optansout.R |only
Rvmmin-2011-5.091/Rvmmin/man/optansout.Rd |only
Rvmmin-2013-1.25/Rvmmin/DESCRIPTION | 8
Rvmmin-2013-1.25/Rvmmin/FLAGS |only
Rvmmin-2013-1.25/Rvmmin/MD5 | 31 +
Rvmmin-2013-1.25/Rvmmin/Makefile |only
Rvmmin-2013-1.25/Rvmmin/NAMESPACE | 5
Rvmmin-2013-1.25/Rvmmin/NEWS |only
Rvmmin-2013-1.25/Rvmmin/R/Rvmmin.R | 493 +++++-----------------------
Rvmmin-2013-1.25/Rvmmin/R/Rvmminb.R |only
Rvmmin-2013-1.25/Rvmmin/R/Rvmminu.R |only
Rvmmin-2013-1.25/Rvmmin/R/bmchk.R |only
Rvmmin-2013-1.25/Rvmmin/R/grfwd.R |only
Rvmmin-2013-1.25/Rvmmin/demo/broydt_test.R | 127 ++++---
Rvmmin-2013-1.25/Rvmmin/demo/cyq_test.R | 148 ++++----
Rvmmin-2013-1.25/Rvmmin/demo/genrose_test.R | 149 ++++----
Rvmmin-2013-1.25/Rvmmin/man/Rvmmin.Rd | 113 ++++--
Rvmmin-2013-1.25/Rvmmin/man/Rvmminb.Rd |only
Rvmmin-2013-1.25/Rvmmin/man/Rvmminu.Rd |only
Rvmmin-2013-1.25/Rvmmin/man/bmchk.Rd |only
Rvmmin-2013-1.25/Rvmmin/man/grfwd.Rd |only
21 files changed, 436 insertions(+), 638 deletions(-)
Title: Generate PMML for various models
Diff between pmml versions 1.2.33 dated 2013-01-20 and 1.2.34 dated 2013-01-26
Description: The Predictive Modelling Markup Language (PMML) is a
language for representing models, in an application independent
way. Such models can then be loaded into other applications
supporting PMML, including ADAPA from Zementis, Teradata
Warehouse Miner and IBM's DB2. The package provides a generic
pmml function to generate pmml for an object. Using a S3
generic function the appropriate method for the class of the
supplied object is dispatched. The package currently supports
the export of PMML for linear regression, generalized linear
regression, multinomial logistic regression, SVMs, rpart
classification trees, randomSurvivalForest, randomForest, and
kmeans clusters. This package is part of the Rattle toolkit.
Author: Graham Williams, Michael Hahsler (arules), Zementis Inc, Hemant
Ishwaran, Udaya B. Kogalur, Rajarshi Guha
Maintainer: Graham Williams
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/pmml.R | 10 +++++-----
man/pmml.ksvm.Rd | 14 +++++++-------
4 files changed, 19 insertions(+), 19 deletions(-)
Title: Multivariate Autoregressive State-Space Modeling
Diff between MARSS versions 3.2 dated 2012-08-30 and 3.3 dated 2013-01-26
Description: The MARSS package provides maximum-likelihood parameter
estimation for constrained and unconstrained linear
multivariate autoregressive state-space (MARSS) models fit to
multivariate time-series data. Fitting is primarily via an
Expectation-Maximization (EM) algorithm, although fitting via
the BFGS algorithm (using the optim function) is also provided.
MARSS models are a class of dynamic linear model (DLM) and
vector autoregressive model (VAR) model. Functions are
provided for parametric and innovations bootstrapping, Kalman
filtering and smoothing, bootstrap model selection criteria
(AICb), confidences intervals via the Hessian approximation and
via bootstrapping and calculation of auxiliary residuals for
detecting outliers and shocks. The user guide shows examples
of using MARSS for parameter estimation for a variety of
applications, model selection, dynamic factor analysis, outlier
and shock detection, and addition of covariates. Type
RShowDoc("UserGuide", package="MARSS") at the R command line to
open the MARSS user guide. Online workshops (lecture material)
at http://faculty.washington.edu/eeholmes/workshops.shtml
Author: Eli Holmes, Eric Ward, and Kellie Wills, NOAA, Seattle, USA
Maintainer: Eli Holmes
MARSS-3.2/MARSS/R/MARSSkf.R |only
MARSS-3.2/MARSS/R/MARSSresids.R |only
MARSS-3.2/MARSS/man/MARSSresids.Rd |only
MARSS-3.3/MARSS/DESCRIPTION | 12 -
MARSS-3.3/MARSS/MD5 | 119 ++++++++-------
MARSS-3.3/MARSS/NAMESPACE | 16 +-
MARSS-3.3/MARSS/NEWS | 42 ++++-
MARSS-3.3/MARSS/R/MARSS.R | 97 ++++++++----
MARSS-3.3/MARSS/R/MARSS_dfa.r | 32 ++--
MARSS-3.3/MARSS/R/MARSS_marxss.R | 140 ++++++++++++++----
MARSS-3.3/MARSS/R/MARSSaic.R | 10 -
MARSS-3.3/MARSS/R/MARSSapplynames.R | 15 +
MARSS-3.3/MARSS/R/MARSSboot.R | 16 +-
MARSS-3.3/MARSS/R/MARSShatyt.r | 2
MARSS-3.3/MARSS/R/MARSShessian.R | 7
MARSS-3.3/MARSS/R/MARSSinfo.R | 2
MARSS-3.3/MARSS/R/MARSSinits.R | 28 +++
MARSS-3.3/MARSS/R/MARSSinnovationsboot.R | 4
MARSS-3.3/MARSS/R/MARSSkem.r | 24 +--
MARSS-3.3/MARSS/R/MARSSkemcheck.r | 5
MARSS-3.3/MARSS/R/MARSSkf.r |only
MARSS-3.3/MARSS/R/MARSSkfas.r |only
MARSS-3.3/MARSS/R/MARSSkfss.R |only
MARSS-3.3/MARSS/R/MARSSoptim.r | 84 ++++-------
MARSS-3.3/MARSS/R/MARSSparamCIs.R | 19 +-
MARSS-3.3/MARSS/R/MARSSsettings.R | 1
MARSS-3.3/MARSS/R/MARSSsimulate.R | 3
MARSS-3.3/MARSS/R/MARSSvectorizeparam.R | 23 +--
MARSS-3.3/MARSS/R/checkMARSSInputs.r | 19 +-
MARSS-3.3/MARSS/R/coef_marssMLE.r |only
MARSS-3.3/MARSS/R/diaghelpers.r | 11 -
MARSS-3.3/MARSS/R/is_marssMLE.r | 14 -
MARSS-3.3/MARSS/R/predict_marssMLE.r |only
MARSS-3.3/MARSS/R/print_marssMLE.r | 204 +++++++++++++++++++--------
MARSS-3.3/MARSS/R/print_marssm.R | 2
MARSS-3.3/MARSS/R/residuals.marssMLE.R |only
MARSS-3.3/MARSS/R/summary_marssm.R | 4
MARSS-3.3/MARSS/inst/doc/Case_study_1.R | 3
MARSS-3.3/MARSS/inst/doc/Case_study_2.R | 14 -
MARSS-3.3/MARSS/inst/doc/Case_study_3.R | 7
MARSS-3.3/MARSS/inst/doc/Case_study_4.R | 10 -
MARSS-3.3/MARSS/inst/doc/Case_study_6.R | 6
MARSS-3.3/MARSS/inst/doc/Case_study_7.R | 22 +-
MARSS-3.3/MARSS/inst/doc/Case_study_8.R | 2
MARSS-3.3/MARSS/inst/doc/EMDerivation.pdf |binary
MARSS-3.3/MARSS/inst/doc/Manual.bib | 24 +++
MARSS-3.3/MARSS/inst/doc/Manual.pdf |binary
MARSS-3.3/MARSS/inst/doc/Quick_Start.Rnw | 181 +++++++++++++----------
MARSS-3.3/MARSS/inst/doc/Quick_Start.pdf |binary
MARSS-3.3/MARSS/inst/doc/README_vers_3.0.pdf |binary
MARSS-3.3/MARSS/inst/doc/README_vers_3.0.rnw | 7
MARSS-3.3/MARSS/inst/doc/UserGuide.pdf |binary
MARSS-3.3/MARSS/man/MARSS-package.Rd | 2
MARSS-3.3/MARSS/man/MARSS.Rd | 7
MARSS-3.3/MARSS/man/MARSS.marxss.Rd | 4
MARSS-3.3/MARSS/man/MARSShatyt.Rd | 5
MARSS-3.3/MARSS/man/MARSShessian.Rd | 3
MARSS-3.3/MARSS/man/MARSSinits.Rd | 11 -
MARSS-3.3/MARSS/man/MARSSkf.Rd | 61 +++++---
MARSS-3.3/MARSS/man/MARSSoptim.Rd | 3
MARSS-3.3/MARSS/man/MARSSparamCIs.Rd | 5
MARSS-3.3/MARSS/man/MARSSvectorizeparam.Rd | 11 -
MARSS-3.3/MARSS/man/coef.marssMLE.rd |only
MARSS-3.3/MARSS/man/parmat.Rd | 3
MARSS-3.3/MARSS/man/print.marssMLE.rd | 42 +++--
MARSS-3.3/MARSS/man/residuals.marssMLE.Rd |only
66 files changed, 865 insertions(+), 523 deletions(-)
Title: CoreArray Genomic Data Structure (GDS) R Interface
Diff between gdsfmt versions 0.9.10 dated 2012-08-25 and 0.9.11 dated 2013-01-26
Description: CoreArray project is to develop portable and scalable
storage technologies for bioinformatics data, allowing parallel
computing at the multicore and cluster levels.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
gdsfmt-0.9.10/gdsfmt/man/applylt.gdsn.Rd |only
gdsfmt-0.9.10/gdsfmt/man/clusterApplylt.gdsn.Rd |only
gdsfmt-0.9.10/gdsfmt/man/gdsclass.Rd |only
gdsfmt-0.9.10/gdsfmt/man/gdsn.Rd |only
gdsfmt-0.9.10/gdsfmt/man/print.gdsclass.Rd |only
gdsfmt-0.9.10/gdsfmt/man/print.gdsn.Rd |only
gdsfmt-0.9.11/gdsfmt/DESCRIPTION | 8
gdsfmt-0.9.11/gdsfmt/MD5 | 119 -
gdsfmt-0.9.11/gdsfmt/NAMESPACE | 4
gdsfmt-0.9.11/gdsfmt/NEWS | 15
gdsfmt-0.9.11/gdsfmt/R/GDS.all.R | 1019 +++-------------
gdsfmt-0.9.11/gdsfmt/inst/CITATION |only
gdsfmt-0.9.11/gdsfmt/inst/unitTests/runit.01.datatype.r | 2
gdsfmt-0.9.11/gdsfmt/inst/unitTests/runit.06.apply.r |only
gdsfmt-0.9.11/gdsfmt/man/add.gdsn.Rd | 5
gdsfmt-0.9.11/gdsfmt/man/addfile.gdsn.Rd | 5
gdsfmt-0.9.11/gdsfmt/man/append.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/apply.gdsn.Rd | 87 -
gdsfmt-0.9.11/gdsfmt/man/cleanup.gds.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/closefn.gds.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/clusterApply.gdsn.Rd | 83 -
gdsfmt-0.9.11/gdsfmt/man/cnt.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/compression.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/createfn.gds.Rd | 5
gdsfmt-0.9.11/gdsfmt/man/delete.attr.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/delete.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/gds.class.Rd |only
gdsfmt-0.9.11/gdsfmt/man/gdsUnitTest.Rd |only
gdsfmt-0.9.11/gdsfmt/man/gdsfmt-package.Rd | 13
gdsfmt-0.9.11/gdsfmt/man/gdsn.class.Rd |only
gdsfmt-0.9.11/gdsfmt/man/get.attr.gdsn.Rd | 5
gdsfmt-0.9.11/gdsfmt/man/getfile.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/index.gdsn.Rd | 5
gdsfmt-0.9.11/gdsfmt/man/lasterr.gds.Rd | 1
gdsfmt-0.9.11/gdsfmt/man/ls.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/name.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/objdesp.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/openfn.gds.Rd | 5
gdsfmt-0.9.11/gdsfmt/man/print.gds.class.Rd |only
gdsfmt-0.9.11/gdsfmt/man/print.gdsn.class.Rd |only
gdsfmt-0.9.11/gdsfmt/man/put.attr.gdsn.Rd | 5
gdsfmt-0.9.11/gdsfmt/man/read.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/readex.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/readmode.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/rename.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/setdim.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/sync.gds.Rd | 3
gdsfmt-0.9.11/gdsfmt/man/write.gdsn.Rd | 3
gdsfmt-0.9.11/gdsfmt/src/CoreDEF.h | 4
gdsfmt-0.9.11/gdsfmt/src/CoreGDS.cpp | 14
gdsfmt-0.9.11/gdsfmt/src/dBase.cpp | 378 +++--
gdsfmt-0.9.11/gdsfmt/src/dBase.h | 154 +-
gdsfmt-0.9.11/gdsfmt/src/dFile.cpp | 8
gdsfmt-0.9.11/gdsfmt/src/dFile.h | 16
gdsfmt-0.9.11/gdsfmt/src/dParallel.cpp | 2
gdsfmt-0.9.11/gdsfmt/src/dParallel.h | 4
gdsfmt-0.9.11/gdsfmt/src/dPlatform.cpp | 10
gdsfmt-0.9.11/gdsfmt/src/dPlatform.h | 4
gdsfmt-0.9.11/gdsfmt/src/dSeq.cpp | 2
gdsfmt-0.9.11/gdsfmt/src/dSeq.h | 18
gdsfmt-0.9.11/gdsfmt/src/dStream.cpp | 2
gdsfmt-0.9.11/gdsfmt/src/dStream.h | 4
gdsfmt-0.9.11/gdsfmt/src/dStruct.cpp | 462 +++++++
gdsfmt-0.9.11/gdsfmt/src/dStruct.h | 127 +
gdsfmt-0.9.11/gdsfmt/src/dType.h | 28
gdsfmt-0.9.11/gdsfmt/src/gdsfmt.cpp | 882 +++++++++++--
gdsfmt-0.9.11/gdsfmt/tests/runTests.R | 22
67 files changed, 2174 insertions(+), 1407 deletions(-)
Title: Delayed-Data Packages
Diff between g.data versions 2.2 dated 2012-10-31 and 2.3 dated 2013-01-26
Description: Create and maintain delayed-data packages (ddp's). Data
stored in a ddp are available on demand, but do not take up
memory until requested. You attach a ddp with g.data.attach(),
then read from it and assign to it in a manner similar to
S-PLUS, except that you must run g.data.save() to actually
commit to disk.
Author: David Brahm
Maintainer: David Brahm
ChangeLog | 3 +++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/g.data.attach.R | 2 +-
inst/doc/g.data.pdf |binary
man/g.data.save.Rd | 5 ++---
6 files changed, 15 insertions(+), 13 deletions(-)