More information about snpStatsWriter at CRAN
Permanent link
Title: Convert Spatial Grids to Polygons
Diff between Grid2Polygons versions 0.1-0 dated 2012-05-27 and 0.1-2 dated 2013-01-28
Description: This package converts a spatial object from class
SpatialGridDataFrame to SpatialPolygonsDataFrame.
Author: Jason C. Fisher
Maintainer: Jason C. Fisher
Grid2Polygons-0.1-0/Grid2Polygons/.gitignore |only
Grid2Polygons-0.1-0/Grid2Polygons/inst/doc/Concept_Diagram.pdf |only
Grid2Polygons-0.1-2/Grid2Polygons/DESCRIPTION | 12 -
Grid2Polygons-0.1-2/Grid2Polygons/LICENSE | 12 -
Grid2Polygons-0.1-2/Grid2Polygons/MD5 | 18 +
Grid2Polygons-0.1-2/Grid2Polygons/NEWS |only
Grid2Polygons-0.1-2/Grid2Polygons/R/Grid2Polygons.R | 62 +++++-
Grid2Polygons-0.1-2/Grid2Polygons/data/DEM.rda |binary
Grid2Polygons-0.1-2/Grid2Polygons/inst/doc/Concept_diagram.pdf |only
Grid2Polygons-0.1-2/Grid2Polygons/inst/doc/Concept_diagram.rnw |only
Grid2Polygons-0.1-2/Grid2Polygons/man/DEM.Rd | 7
Grid2Polygons-0.1-2/Grid2Polygons/man/Grid2Polygons.Rd | 98 ++++++----
Grid2Polygons-0.1-2/Grid2Polygons/src/Grid2Polygons.c | 20 +-
13 files changed, 160 insertions(+), 69 deletions(-)
Title: Comparison of Binary Diagnostic Tests in a Paired Study Design
Diff between DTComPair versions 0.90 dated 2013-01-26 and 0.92 dated 2013-01-28
Description: This package contains functions to compare the accuracy of
two binary diagnostic tests in a "paired" study design, i.e.
when each test is applied to each subject in the study.
Author: Christian Stock, Thomas Hielscher
Maintainer: Christian Stock
DESCRIPTION | 12 ++++++------
MD5 | 28 ++++++++++++++++------------
R/DLR.R |only
R/DTComPair.R | 12 ++++++------
R/dlr.regtest.R |only
inst/CITATION | 5 +++--
man/DLR.Rd |only
man/acc.1test.Rd | 12 ++++++++----
man/acc.paired.Rd | 5 +++--
man/dlr.regtest.Rd |only
man/dtcompair-package.rd | 24 +++++++++++++-----------
man/pv.gs.Rd | 8 ++++----
man/pv.rpv.Rd | 10 +++++-----
man/pv.wgs.Rd | 8 ++++----
man/represent.long.Rd | 10 +++++-----
man/sesp.exactbinom.Rd | 11 +++++------
man/tab.paired.Rd | 9 +++++++--
17 files changed, 85 insertions(+), 69 deletions(-)
More information about RcmdrPlugin.plotByGroup at CRAN
Permanent link
Title: Multidimensional latent class Item Response Theory models
Diff between MultiLCIRT versions 2.1 dated 2012-12-11 and 2.2 dated 2013-01-28
Description: This package provides a flexible framework for the Item
Response Theory analysis of dichotomous and ordinal polytomous
outcomes under the assumption of multidimensionality and
discreteness of the latent traits. The fitting algorithms allow
for missing responses and for different item parameterizations
and are based on the Expectation-Maximization paradigm.
Individual covariates affecting the class weights may be
included in the new version (since 2.1).
Author: Francesco Bartolucci, Silvia Bacci, Michela Gnaldi - University
of Perugia (IT)
Maintainer: Francesco Bartolucci
DESCRIPTION | 12 +++---
MD5 | 24 +++++++-----
R/est_multi_poly.R | 89 ++++++++++++++++++++++++++++++++++++----------
R/est_multilogit.R | 23 ++++++-----
R/search.model.R |only
R/standard.matrix.R |only
man/MultiLCIRT-package.Rd | 8 ++--
man/est_multi_poly.Rd | 10 +++--
man/est_multilogit.Rd | 8 +++-
man/hads.Rd | 2 -
man/prob_multilogit.Rd | 2 -
man/search.model.Rd |only
man/standard.matrix.Rd |only
man/test_dim.Rd | 2 -
src/lk_obs.f |only
src/matr_YY.f |only
16 files changed, 123 insertions(+), 57 deletions(-)
Title: Learning Bayesian Networks with Mixed Variables
Diff between deal versions 1.2-35 dated 2012-08-14 and 1.2-37 dated 2013-01-28
Description: Bayesian networks with continuous and/or discrete
variables can be learned and compared from data.
Author: Susanne Gammelgaard Bottcher, Claus Dethlefsen.
Maintainer: Claus Dethlefsen
DESCRIPTION | 13 ++++++-------
MD5 | 8 ++++----
R/generic.R | 20 +++++++++++---------
data/ksl.rda |binary
data/reinis.rda |binary
5 files changed, 21 insertions(+), 20 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Diff between stochvol versions 0.5-0 dated 2013-01-23 and 0.5-1 dated 2013-01-28
Description: This package provides efficient algorithms for fully
Bayesian estimation of stochastic volatility (SV) models via
Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner
Maintainer: Gregor Kastner
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 4 +++-
R/utilities_svdraws.R | 12 ++++++------
R/wrapper.R | 2 +-
5 files changed, 18 insertions(+), 16 deletions(-)
Title: Text Mining Package
Diff between tm versions 0.5-8.1 dated 2012-12-15 and 0.5-8.3 dated 2013-01-28
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut, cre], Kurt Hornik [aut]
Maintainer: Ingo Feinerer
DESCRIPTION | 11 +--
MD5 | 18 ++---
NAMESPACE | 13 ++++
R/corpus.R | 145 ++++++++++++++++++++++++++++++++++--------------
R/matrix.R | 84 +++++++++++++++++----------
R/score.R | 21 ++++--
R/tokenizer.R | 27 +++-----
inst/doc/extensions.pdf |binary
inst/doc/tm.pdf |binary
man/combine.Rd | 14 +---
10 files changed, 214 insertions(+), 119 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-01-09 0.2-0
2009-12-26 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-02-17 0.2.1
2011-12-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-28 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-17 0.3-0
2009-10-14 0.2-2
2008-10-09 0.2-1
2008-04-09 0.2-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-03-19 1.0.9
2010-03-14 1.0.7
2010-03-13 1.0.6
2010-03-01 1.0.5
2010-02-22 1.0.4
2010-02-16 1.0.3
2010-02-15 1.0.1
2010-02-15 1.0.2
2010-02-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-06-20 0.6.2
2011-06-19 0.6.1
2011-06-09 0.5
2010-03-19 0.4
2010-03-15 0.3
2010-03-14 0.2
2010-03-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-27 1.02
2010-06-23 1.01
2007-11-27 1.00
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-03-23 1.0
Title: Tcl/Tk Additions
Diff between tcltk2 versions 1.2-3 dated 2012-05-02 and 1.2-4 dated 2013-01-28
Description: A series of additional Tcl commands and Tk widgets with
style and various functions (under Windows: DDE exchange,
access to the registry and icon manipulation) to supplement the
tcltk package
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
NEWS | 5 +++++
R/tclTask.R | 2 +-
R/tcltk2-Internal.R | 15 ++++++++-------
R/tk2fonts.R | 12 ++++++------
man/tcltk2-package.Rd | 4 ++--
man/tk2fonts.Rd | 7 ++++---
8 files changed, 37 insertions(+), 30 deletions(-)
Title: SciViews GUI API - Widgets & Windows
Diff between svWidgets versions 0.9-42 dated 2012-04-01 and 0.9-43 dated 2013-01-28
Description: High level management of widgets, windows and other
graphical resources.
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
DESCRIPTION | 12 +++++-------
MD5 | 22 +++++++++++-----------
NEWS | 6 ++++++
R/tkImg.R | 6 +++---
R/tkMenu.R | 24 ++++++++++++------------
R/tkTool.R | 24 ++++++++++++------------
R/tkWin.R | 2 +-
man/Img.Rd | 5 +++--
man/Menu.Rd | 5 +++--
man/Tool.Rd | 5 +++--
man/Win.Rd | 2 +-
man/svWidgets-package.Rd | 4 ++--
12 files changed, 62 insertions(+), 55 deletions(-)
Title: SciViews GUI API - Unit testing
Diff between svUnit versions 0.7-10 dated 2012-04-01 and 0.7-11 dated 2013-01-28
Description: A complete unit test system and functions to implement its
GUI part
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
DESCRIPTION | 10 ++++------
MD5 | 13 +++++++------
NEWS | 9 +++++++++
R/guiTestReport.R | 2 +-
R/svSuite.R | 6 +++---
R/svUnit-internal.R | 10 +++++-----
TestsvUnit.R |only
man/svUnit-package.Rd | 4 ++--
8 files changed, 31 insertions(+), 23 deletions(-)
Title: SciViews GUI API - Tools (wrapper for packages tools and
codetools)
Diff between svTools versions 0.9-2 dated 2012-04-01 and 0.9-3 dated 2013-01-28
Description: Set of tools aimed at wrapping some of the functionalities
of the packages tools, utils and codetools into a nicer format
so that an IDE can use them
Author: Philippe Grosjean and Romain Francois
Maintainer: Philippe Grosjean
DESCRIPTION | 10 ++++------
MD5 | 16 ++++++++--------
NAMESPACE | 2 +-
NEWS | 6 ++++++
R/lint.R | 22 +++++++++++++++-------
TODO | 4 ++++
data/bibRNews.rda |binary
data/descriptionFields.rda |binary
man/svTools-package.Rd | 4 ++--
9 files changed, 40 insertions(+), 24 deletions(-)
Title: SciViews GUI API - Sweave functions
Diff between svSweave versions 0.9-3 dated 2012-04-01 and 0.9-8 dated 2013-01-28
Description: Supporting functions for the GUI API (Sweave functions)
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
svSweave-0.9-3/svSweave/inst/LICENSE |only
svSweave-0.9-8/svSweave/DESCRIPTION | 12 +--
svSweave-0.9-8/svSweave/MD5 | 18 ++--
svSweave-0.9-8/svSweave/NAMESPACE | 4 -
svSweave-0.9-8/svSweave/NEWS | 53 +++++++++++++
svSweave-0.9-8/svSweave/R/cleanLyxRnw.R | 17 +++-
svSweave-0.9-8/svSweave/R/tangleLyxRnw.R | 94 ++++++++++++++++++++----
svSweave-0.9-8/svSweave/R/weaveLyxRnw.R | 90 +++++++++++++++++++---
svSweave-0.9-8/svSweave/TODO |only
svSweave-0.9-8/svSweave/man/cleanLyxRnw.Rd | 29 ++++++-
svSweave-0.9-8/svSweave/man/svSweave-package.Rd | 4 -
11 files changed, 266 insertions(+), 55 deletions(-)
Title: SciViews GUI API - R Socket Server
Diff between svSocket versions 0.9-53 dated 2012-04-01 and 0.9-54 dated 2013-01-28
Description: Implements a simple socket server allowing to connect GUI
clients to R
Author: Philippe Grosjean, with contributions from Matthew Dowle
Maintainer: Philippe Grosjean
DESCRIPTION | 12 +++++-------
MD5 | 18 +++++++++---------
NEWS | 10 +++++++++-
R/parSocket.R | 2 +-
R/startSocketServer.R | 14 +++++++-------
R/stopSocketServer.R | 2 +-
R/svSocket-Internal.R | 8 +++-----
man/parSocket.Rd | 4 ++--
man/sendSocketClients.Rd | 32 ++++++++++++++++++++++++++++++++
man/svSocket-package.Rd | 4 ++--
10 files changed, 71 insertions(+), 35 deletions(-)
Title: SciViews GUI API - Functions to interface with Komodo Edit/IDE
Diff between svKomodo versions 0.9-58 dated 2012-06-22 and 0.9-59 dated 2013-01-28
Description: Functions to manage the GUI client, like Komodo with the
SciViews-K extension
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
NEWS | 19 ++++++++++++++++---
R/svKomodo-internal.R | 24 +++++++++++++++---------
inst/NEWS.Rd | 17 +++++++++++++++--
man/koInstall.Rd | 5 +++--
6 files changed, 59 insertions(+), 26 deletions(-)
Title: SciViews GUI API - R HTTP server
Diff between svHttp versions 0.9-53 dated 2012-04-01 and 0.9-54 dated 2013-01-28
Description: Implements a simple HTTP server allowing to connect GUI
clients to R
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
DESCRIPTION | 12 ++++++------
MD5 | 9 +++++----
NEWS | 8 ++++++++
R/httpServer.R | 2 +-
inst/NEWS.Rd |only
man/svHttp-package.Rd | 4 ++--
6 files changed, 22 insertions(+), 13 deletions(-)
Title: SciViews GUI API - Functions to manage GUIs
Diff between svGUI versions 0.9-53 dated 2012-04-01 and 0.9-54 dated 2013-01-28
Description: Functions to manage GUIs from R
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
DESCRIPTION | 10 ++++------
MD5 | 14 +++++++-------
NEWS | 13 ++++++++++++-
R/guiAdd.R | 10 +++++-----
R/svGUI-internal.R | 10 +++++-----
man/dontAsk.Rd | 2 +-
man/guiAdd.Rd | 6 +++---
man/svGUI-package.Rd | 4 ++--
8 files changed, 39 insertions(+), 30 deletions(-)
More information about svDialogstcltk at CRAN
Permanent link
Title: SciViews GUI API - Dialog boxes
Diff between svDialogs versions 0.9-52 dated 2012-04-04 and 0.9-54 dated 2013-01-28
Description: Rapidly construct dialog boxes for your GUI, including an
automatic function assistant
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
svDialogs-0.9-52/svDialogs/man/display.Rd |only
svDialogs-0.9-52/svDialogs/man/guiDlg.Rd |only
svDialogs-0.9-52/svDialogs/man/guiDlgFunction.Rd |only
svDialogs-0.9-52/svDialogs/man/guiEval.Rd |only
svDialogs-0.9-52/svDialogs/man/guiPane.tcltk.Rd |only
svDialogs-0.9-52/svDialogs/man/guiSetStyle.tcltk.Rd |only
svDialogs-0.9-54/svDialogs/DESCRIPTION | 10
svDialogs-0.9-54/svDialogs/MD5 | 42
svDialogs-0.9-54/svDialogs/NAMESPACE | 23
svDialogs-0.9-54/svDialogs/NEWS | 17
svDialogs-0.9-54/svDialogs/R/dlgDir.R | 2
svDialogs-0.9-54/svDialogs/R/dlgInput.R | 2
svDialogs-0.9-54/svDialogs/R/dlgList.R | 54
svDialogs-0.9-54/svDialogs/R/dlgMessage.R | 2
svDialogs-0.9-54/svDialogs/R/dlgOpen.R | 2
svDialogs-0.9-54/svDialogs/R/dlgSave.R | 2
svDialogs-0.9-54/svDialogs/R/flexibleDlg.R | 1124 ++++++++++----------
svDialogs-0.9-54/svDialogs/R/guiSetStyle.tcltk.R | 154 +-
svDialogs-0.9-54/svDialogs/R/menu.R | 525 ++++++++-
svDialogs-0.9-54/svDialogs/R/svDialogs-internal.R | 40
svDialogs-0.9-54/svDialogs/TODO | 7
svDialogs-0.9-54/svDialogs/inst/NEWS.Rd | 48
svDialogs-0.9-54/svDialogs/man/dlgForm.Rd | 8
svDialogs-0.9-54/svDialogs/man/menu.Rd | 5
svDialogs-0.9-54/svDialogs/man/svDialogs-package.Rd | 12
25 files changed, 1320 insertions(+), 759 deletions(-)
Title: statistical methods for analysing multivariate abundance data
Diff between mvabund versions 3.6.3 dated 2012-11-28 and 3.6.11 dated 2013-01-28
Description: A set of tools for displaying, modeling and analysing
multivariate abundance data in community ecology. See
mvabund-package.Rd for details of overall package organization.
The package is implemented with the Gnu Scientific Library
(http://www.gnu.org/software/gsl/) and Rcpp
(http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright and David Warton
Maintainer: Yi Wang
DESCRIPTION | 8 -
MD5 | 27 +--
R/anova.manyglm.R | 18 +-
R/betaest.R |only
R/manyglm.R | 9 -
R/summary.manyglm.R | 19 +-
man/anova.manyglm.Rd | 5
man/manyglm.Rd | 10 -
man/summary.manyglm.Rd | 5
src/RtoGlm.cpp | 2
src/RtoGlmAnova.cpp | 5
src/RtoGlmSmry.cpp | 5
src/glm.cpp | 385 ++++++++++++++++++++++++++-----------------------
src/glmtest.cpp | 137 ++++++++---------
src/resampTest.h | 19 +-
15 files changed, 362 insertions(+), 292 deletions(-)
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Diff between memisc versions 0.95-39 dated 2013-01-05 and 0.96-2 dated 2013-01-28
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Author: Martin Elff (with contributions from Christopher N. Lawrence,
Dave Atkins, Jason W. Morgan, and Achim Zeileis)
Maintainer: Martin Elff
DESCRIPTION | 17 +
MD5 | 31 +--
NAMESPACE | 47 +---
R/Sapply.R | 20 --
R/aaa.R |only
R/import-internal-spss-syntax.R | 2
R/importer-methods.R | 2
R/mtable.R | 316 ---------------------------------
R/numeric-if-possible.R |only
R/spss-syntax-methods.R | 25 --
R/yy-mtable-ext-AchimZeileis.R |only
R/yy-mtable-ext-ChristopherNLawrence.R |only
R/yy-mtable-ext-DaveAtkins.R |only
R/yy-mtable-ext-JasonWMorgan.R |only
R/yz-getSummary-mer.R |only
R/zzz.R | 124 ------------
inst/NEWS | 25 ++
inst/doc/anes48.pdf |binary
man/getSummary.Rd | 12 +
src/dumbswap.c | 4
20 files changed, 88 insertions(+), 537 deletions(-)
Title: A Monte Carlo permutation method for multiple test correlation
in case/control association study
Diff between MCPerm versions 1.1.2 dated 2012-12-30 and 1.1.3 dated 2013-01-28
Description: A Monte Carlo permutation method for multiple test
correlation in case/control association study.
Author: Lanying Zhang and Yongshuai Jiang
Maintainer: Yongshuai Jiang
MCPerm-1.1.2/MCPerm/R/MCPerm.R |only
MCPerm-1.1.2/MCPerm/R/permuteMatrix.R |only
MCPerm-1.1.2/MCPerm/R/tradPerm.R |only
MCPerm-1.1.2/MCPerm/man/MCPerm.Rd |only
MCPerm-1.1.2/MCPerm/man/permuteMatrix.Rd |only
MCPerm-1.1.2/MCPerm/man/tradPerm.Rd |only
MCPerm-1.1.3/MCPerm/DESCRIPTION | 12 -
MCPerm-1.1.3/MCPerm/MD5 | 49 +++--
MCPerm-1.1.3/MCPerm/R/Armitage.MCPerm.R |only
MCPerm-1.1.3/MCPerm/R/Armitage.R | 53 ++++--
MCPerm-1.1.3/MCPerm/R/Armitage.TradPerm.R |only
MCPerm-1.1.3/MCPerm/R/MCPerm-internal.R |only
MCPerm-1.1.3/MCPerm/R/OR.MCPerm.R |only
MCPerm-1.1.3/MCPerm/R/OR.R | 55 ++++--
MCPerm-1.1.3/MCPerm/R/OR.TradPerm.R |only
MCPerm-1.1.3/MCPerm/R/chisq.MCPerm.R |only
MCPerm-1.1.3/MCPerm/R/chisq.TradPerm.R |only
MCPerm-1.1.3/MCPerm/R/fisher.MCPerm.R |only
MCPerm-1.1.3/MCPerm/R/fisher.TradPerm.R |only
MCPerm-1.1.3/MCPerm/R/genotypeStat.R | 234 ++++++++++++---------------
MCPerm-1.1.3/MCPerm/R/permuteData.R | 39 +---
MCPerm-1.1.3/MCPerm/R/permuteGenotype.R |only
MCPerm-1.1.3/MCPerm/data/exampleData.rda |binary
MCPerm-1.1.3/MCPerm/man/Armitage.MCPerm.Rd |only
MCPerm-1.1.3/MCPerm/man/Armitage.Rd | 79 ++++++---
MCPerm-1.1.3/MCPerm/man/Armitage.TradPerm.Rd |only
MCPerm-1.1.3/MCPerm/man/MCPerm-package.Rd | 158 +++++++++++++-----
MCPerm-1.1.3/MCPerm/man/OR.MCPerm.Rd |only
MCPerm-1.1.3/MCPerm/man/OR.Rd | 65 ++++---
MCPerm-1.1.3/MCPerm/man/OR.TradPerm.Rd |only
MCPerm-1.1.3/MCPerm/man/chisq.MCPerm.Rd |only
MCPerm-1.1.3/MCPerm/man/chisq.TradPerm.Rd |only
MCPerm-1.1.3/MCPerm/man/exampleData.Rd | 44 +++--
MCPerm-1.1.3/MCPerm/man/fisher.MCPerm.Rd |only
MCPerm-1.1.3/MCPerm/man/fisher.TradPerm.Rd |only
MCPerm-1.1.3/MCPerm/man/genotypeStat.Rd | 129 ++++++++------
MCPerm-1.1.3/MCPerm/man/permuteData.Rd | 47 +++--
MCPerm-1.1.3/MCPerm/man/permuteGenotype.Rd |only
38 files changed, 572 insertions(+), 392 deletions(-)