Wed, 06 Feb 2013

Package iplots updated to version 1.1-5 with previous version 1.1-4 dated 2011-07-23

Title: iPlots - interactive graphics for R
Description: Interactive plots for R
Author: Simon Urbanek , Tobias Wichtrey
Maintainer: Simon Urbanek

Diff between iplots versions 1.1-4 dated 2011-07-23 and 1.1-5 dated 2013-02-06

 DESCRIPTION          |    7 ++++---
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 NEWS                 |    3 +++
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 inst/java/iplots.jar |binary
 5 files changed, 17 insertions(+), 11 deletions(-)

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Package InteractiveIGraph updated to version 1.0.5 with previous version 1.0.4 dated 2013-02-03

Title: interactive network analysis and visualization.
Description: An extension of the package 'igraph'. This package create possibly to work with 'igraph' objects interactively.
Author: Vygantas Butkus
Maintainer: Vygantas Butkus

Diff between InteractiveIGraph versions 1.0.4 dated 2013-02-03 and 1.0.5 dated 2013-02-06

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 MD5                              |    8 ++++----
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 5 files changed, 24 insertions(+), 16 deletions(-)

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Package rgeos updated to version 0.2-13 with previous version 0.2-12 dated 2013-01-16

Title: Interface to Geometry Engine - Open Source (GEOS)
Description: Interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries. The GEOS library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut], Colin Rundel [aut], Edzer Pebesma [ctb], Karl Ove Hufthammer [ctb]
Maintainer: Roger Bivand

Diff between rgeos versions 0.2-12 dated 2013-01-16 and 0.2-13 dated 2013-02-06

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 DESCRIPTION                   |    8 +++----
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Package rgdal updated to version 0.8-5 with previous version 0.8-4 dated 2013-01-18

Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.7.1) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut], Keitt Tim [aut], Rowlingson Barry [aut], Edzer Pebesma [ctb], Sumner Michael [ctb], Hijmans Robert [ctb]
Maintainer: Roger Bivand

Diff between rgdal versions 0.8-4 dated 2013-01-18 and 0.8-5 dated 2013-02-06

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 DESCRIPTION                     |   21 
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 R/ogr.R                         |    6 
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Package plsdof updated to version 0.2-5 with previous version 0.2-4 dated 2012-11-23

Title: Degrees of Freedom and Statistical Inference for Partial Least Squares Regression
Description: The plsdof package provides Degrees of Freedom estimates for Partial Least Squares (PLS) Regression. Model selection for PLS is based on various information criteria (aic, bic, gmdl) or on cross-validation. Estimates for the mean and covariance of the PLS regression coefficients are available. They allow the construction of approximate confidence intervals and the application of test procedures. Further, cross-validation procedures for Ridge Regression and Principal Components Regression are available.
Author: Nicole Kraemer, Mikio L. Braun
Maintainer: Nicole Kraemer

Diff between plsdof versions 0.2-4 dated 2012-11-23 and 0.2-5 dated 2013-02-06

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Package wfe updated to version 1.2 with previous version 1.1 dated 2012-11-14

Title: Weighted Linear Fixed Effects Regression Models for Causal Inference
Description: This R package provides a computationally efficient way of fitting weighted linear fixed effects estimators for causal inference with various weighting schemes. Imai and Kim (2012) show that weighted linear fixed effects estimators can be used to estimate the average treatment effects under different identification strategies. This includes stratified randomized experiments, matching and stratification for observational studies, first differencing, and difference-in-differences. The package also provides various robust standard errors and a specification test for standard linear fixed effects estimators.
Author: In Song Kim , Kosuke Imai
Maintainer: In Song Kim

Diff between wfe versions 1.1 dated 2012-11-14 and 1.2 dated 2013-02-06

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Package tawny updated to version 2.1.0 with previous version 2.0.2 dated 2012-02-07

Title: Provides various portfolio optimization strategies including random matrix theory and shrinkage estimators
Description: Portfolio optimization typically requires an estimate of a covariance matrix of asset returns. There are many approaches for constructing such a covariance matrix, some using the sample covariance matrix as a starting point. This package provides implementations for two such methods: random matrix theory and shrinkage estimation. Each method attempts to clean or remove noise related to the sampling process from the sample covariance matrix.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe

Diff between tawny versions 2.0.2 dated 2012-02-07 and 2.1.0 dated 2013-02-06

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Package slam updated to version 0.1-28 with previous version 0.1-27 dated 2013-01-27

Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices, based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre], David Meyer [aut], Christian Buchta [aut]
Maintainer: Kurt Hornik

Diff between slam versions 0.1-27 dated 2013-01-27 and 0.1-28 dated 2013-02-06

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Package intamap updated to version 1.3-17 with previous version 1.3-15 dated 2012-07-25

Title: procedures for automated interpolation
Description: A package that provides classes and methods for automated spatial interpolation.
Author: Edzer Pebesma , Jon Olav Skoien with contributions from Olivier Baume, A.Chorti, D.T. Hristopulos, H. Kazianka, S.J. Melles, G. Spiliopoulos
Maintainer: Jon Olav Skoien

Diff between intamap versions 1.3-15 dated 2012-07-25 and 1.3-17 dated 2013-02-06

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Package bReeze updated to version 0.2-0 with previous version 0.1-1 dated 2012-10-29

Title: Functions for wind resource assessment
Description: A collection of functions to analyse, visualize and interpret wind data and to calculate the potential energy production of wind turbines.
Author: Christian Graul and Carsten Poppinga
Maintainer: Christian Graul

Diff between bReeze versions 0.1-1 dated 2012-10-29 and 0.2-0 dated 2013-02-06

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Package rtiff updated to version 1.4.2 with previous version 1.4.1 dated 2010-01-29

Title: A tiff reader for R.
Description: This package will read and write TIFF format images and return them as a pixmap object. Because the resulting object can be very large for even modestly sized TIFF images, images can be reduced as they are read for improved performance. This package is a wrapper around libtiff (www.libtiff.org), on which it depends (i.e. the libtiff shared library must be on your PATH for the binary to work, and tiffio.h must be on your system to build the package from source). By using libtiff's highlevel TIFFReadRGBAImage function, this package inherently support a wide range of image formats and compression schemes. This package also provides an implementation of the Ridler Autothresholding algorithm for easy generation of binary masks.
Author: Eric Kort
Maintainer: Eric Kort

Diff between rtiff versions 1.4.1 dated 2010-01-29 and 1.4.2 dated 2013-02-06

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 10 files changed, 2410 insertions(+), 1750 deletions(-)

More information about rtiff at CRAN
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New package msme with initial version 0.4.0
Package: msme
Type: Package
Title: Functions and Datasets for "Methods of Statistical Model Estimation".
Version: 0.4.0
Date: 2013-01-25
Author: Jospeh Hilbe and Andrew Robinson
Maintainer: Andrew Robinson
Depends: R (>= 2.10), MASS, lattice, ggplot2, gridExtra
Description: This package provides functions and datasets from the book "Methods of Statistical Model Estimation".
License: GPL-3
LazyLoad: yes
Packaged: 2013-02-06 13:03:34 UTC; andrewpr
Repository: CRAN
Date/Publication: 2013-02-06 15:09:42

More information about msme at CRAN
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Package Haplin updated to version 5.0 with previous version 4.1 dated 2012-03-16

Title: Analyzing case-parent triad and/or case-control data with SNP haplotypes
Description: Haplin performs a genetic association analysis of case-parent triad (trio) data with multiple markers. It can also incorporate complete or incomplete control triads, for instance independent control children. Estimation is based on haplotypes, for instance SNP haplotypes, even though phase is not known from the genetic data. Haplin estimates relative risk (RR + conf.int.) and p-value associated with each haplotype. It uses maximum likelihood estimation to make optimal use of data from triads with missing genotypic data, for instance if some SNPs has not been typed for some individuals. Haplin also allows estimation of effects of maternal haplotypes and parent-of-origin effects, particularly appropriate in perinatal epidemiology. Haplin allows special models, like X-inactivation, to be fitted on the X-chromosome.
Author: Hakon K. Gjessing
Maintainer: Hakon K. Gjessing

Diff between Haplin versions 4.1 dated 2012-03-16 and 5.0 dated 2013-02-06

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New package colorfulVennPlot with initial version 1.0
Package: colorfulVennPlot
Type: Package
Title: Plot and add custom coloring to Venn diagram for 3-dimensional data.
Version: 1.0
Date: 2013-01-31
Author: Elliot Noma, Aliona Manvae
Maintainer: Elliot Noma
Description: Given 3-dimensional data, it computes a vector of length 7 describing all but one variations of grouping all 3 dimension. It then plots up Venn diagram, i.e. 'crossing circles'. The user is able to specify values, labels for each circle-group and colors. Here is what it would look like: http://elliotnoma.files.wordpress.com/2011/02/venndiagram.png
Depends: grid
Suggests: MASS
License: GPL-2
Packaged: 2013-02-05 19:17:15 UTC; elliotnoma
Repository: CRAN
Date/Publication: 2013-02-06 14:45:56

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Package metafor updated to version 1.7-0 with previous version 1.6-0 dated 2011-04-13

Title: Meta-Analysis Package for R
Description: The metafor package provides a comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect size or outcome measures, fit fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, and L'Abbe plots). For meta-analyses of 2x2 tables, proportions, incidence rates, and incidence rate ratios, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects (conditional) logistic and Poisson regression models).
Author: Wolfgang Viechtbauer
Maintainer: Wolfgang Viechtbauer

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Package RMessenger updated to version 0.1.1 with previous version 0.1 dated 2013-01-29

Title: IM Client for R
Description: IM Client which implements XMPP protocols based on libstrophe(http://strophe.im/libstrophe/) For any suggestion or bug report, please visit https://github.com/wush978/RMessenger
Author: Wush Wu
Maintainer: Wush Wu

Diff between RMessenger versions 0.1 dated 2013-01-29 and 0.1.1 dated 2013-02-06

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New package rlme with initial version 0.1
Package: rlme
Type: Package
Title: Random Effects Nested Models
Version: 0.1
Date: 2013-01-07
Author: Yusuf Bilgic and Herb Susmann
Maintainer: Yusuf Bilgic
Description: Estimates fixed effects and predicts random effects in two and three level random effects nested models.
License: GPL (>= 2)
Depends: MASS, quantreg, nlme, mgcv, magic, stringr
Packaged: 2013-02-05 18:25:56 UTC; ykb
Repository: CRAN
Date/Publication: 2013-02-06 09:58:49

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Package RandomFields updated to version 2.0.65 with previous version 2.0.59-1 dated 2013-01-23

Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields; conditional simulation; kriging
Author: Martin Schlather [aut, cre], Peter Menck [aut], Richard Singleton [ctb], Ben Pfaff [ctb], R Core team [ctb]
Maintainer: Martin Schlather

Diff between RandomFields versions 2.0.59-1 dated 2013-01-23 and 2.0.65 dated 2013-02-06

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New package RcmdrPlugin.depthTools with initial version 1.1
Package: RcmdrPlugin.depthTools
Type: Package
Title: R commander Depth Tools Plug-In
Version: 1.1
Date: 2013-01-30
Author: Sara Lopez-Pintado and Aurora Torrente .
Maintainer: Aurora Torrente
Depends: Rcmdr (>= 1.4-0), tcltk, depthTools
Description: This package provides an Rcmdr plug-in based on the depthTools package, which implements different robust statistical tools for the description and analysis of gene expression data based on the Modified Band Depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods.
License: GPL (>= 2)
Packaged: 2013-02-06 08:59:45 UTC; migueltardio
Repository: CRAN
Date/Publication: 2013-02-06 11:07:29

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Package stoichcalc updated to version 1.1-3 with previous version 1.1-2 dated 2011-04-24

Title: R Functions for Solving Stoichiometric Equations
Description: Given a list of substance compositions, a list of substances involved in a process, and a list of constraints in addition to mass conservation of elementary constituents, the package contains functions to build the substance composition matrix, to analyze the uniqueness of process stoichiometry, and to calculate stoichiometric coefficients if process stoichiometry is unique. (See Reichert, P. and Schuwirth, N., A generic framework for deriving process stoichiometry in enviromental models, Environmental Modelling and Software 25, 1241-1251, 2010 for more details.)
Author: Peter Reichert
Maintainer: Peter Reichert

Diff between stoichcalc versions 1.1-2 dated 2011-04-24 and 1.1-3 dated 2013-02-06

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Package spBayes updated to version 0.3-3 with previous version 0.3-2 dated 2013-01-29

Title: Univariate and Multivariate Spatial Modeling
Description: spBayes fits univariate and multivariate spatial models with Markov chain Monte Carlo (MCMC).
Author: Andrew O. Finley , Sudipto Banerjee
Maintainer: Andrew O. Finley

Diff between spBayes versions 0.3-2 dated 2013-01-29 and 0.3-3 dated 2013-02-06

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Package partDSA updated to version 0.8.5 with previous version 0.8.4 dated 2012-01-25

Title: Partitioning using deletion, substitution, and addition moves
Description: partDSA is a novel tool for generating a piecewise constant estimation list of increasingly complex predictors based on an intensive and comprehensive search over the entire covariate space.
Author: Annette Molinaro , Karen Lostritto , Gregory Ryslik , Steve Weston
Maintainer: Annette Molinaro

Diff between partDSA versions 0.8.4 dated 2012-01-25 and 0.8.5 dated 2013-02-06

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Package glmpath updated to version 0.97 with previous version 0.96 dated 2013-02-02

Title: L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
Description: A path-following algorithm for L1 regularized generalized linear models and Cox proportional hazards model
Author: Mee Young Park, Trevor Hastie
Maintainer: Mee Young Park

Diff between glmpath versions 0.96 dated 2013-02-02 and 0.97 dated 2013-02-06

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New package ExactPath with initial version 1.0
Package: ExactPath
Type: Package
Title: Exact solution paths for regularized LASSO regressions with L_1 penalty
Version: 1.0
Date: 2013-02-05
Author: Dr. Kai Wang
Maintainer: Kai Wang
Depends: R(>= 2.12), ncvreg, lars
Description: ExactPath implements an algorithm for exact LASSO solution. Two methods are provided to print and visualize the whole solution paths. Use ?ExactPath to see an introduction. Packages ncvreg and lars are required so that their data sets can be used in examples.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2013-02-05 15:17:22 UTC; kaiwang
Repository: CRAN
Date/Publication: 2013-02-06 08:27:04

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Package endorse updated to version 1.3.1 with previous version 1.3 dated 2013-01-24

Title: R Package for Analyzing Endorsement Experiments
Description: This R package implements the statistical model proposed by Bullock, Imai, and Shapiro (2011; Political Analysis) to analyze endorsement experiments. Endorsement experiments are a survey methodology for eliciting truthful responses to sensitive questions. This methodology is helpful when measuring support for socially sensitive political actors such as militant groups. The model is fitted with the Markov chain Monte Carlo algorithm and produces the output containing draws from the posterior distribution.
Author: Yuki Shiraito , Kosuke Imai
Maintainer: Yuki Shiraito

Diff between endorse versions 1.3 dated 2013-01-24 and 1.3.1 dated 2013-02-06

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