Title: Dirichlet Process Bayesian Clustering, Profile Regression
Diff between PReMiuM versions 3.0.13 dated 2013-01-30 and 3.0.15 dated 2013-02-07
Description: Dirichlet process Bayesian clustering, also known as
profile regression.
Author: David I. Hastie
Maintainer: Silvia Liverani
PReMiuM-3.0.13/PReMiuM/src/lib |only
PReMiuM-3.0.15/PReMiuM/DESCRIPTION | 14
PReMiuM-3.0.15/PReMiuM/MD5 | 1597 ++++++++++++++++++++++----
PReMiuM-3.0.15/PReMiuM/man/PReMiuM-package.Rd | 6
PReMiuM-3.0.15/PReMiuM/src/Makevars | 2
PReMiuM-3.0.15/PReMiuM/src/Makevars.win | 2
PReMiuM-3.0.15/PReMiuM/src/include/boost |only
7 files changed, 1411 insertions(+), 210 deletions(-)
Title: Utilities for Sweave together with TeX listings package
Diff between SweaveListingUtils versions 0.5.5 dated 2012-02-06 and 0.6 dated 2013-02-07
More information about SweaveListingUtils at CRAN
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Author: Peter Ruckdeschel
Maintainer: Peter Ruckdeschel
DESCRIPTION | 16
MD5 | 16
R/SweaveListingUtils.R | 9
R/keywordsStyle.R | 8
inst/NEWS | 26
inst/doc/ExampleSweaveListingUtils.pdf |binary
man/0SweaveListingUtils-package.Rd | 6
man/library.Rd | 16
tests/Examples/SweaveListingUtils-Ex.Rout.save | 2906 ++++++++++++-------------
9 files changed, 1551 insertions(+), 1452 deletions(-)
Permanent link
Title: Utilities for start-up messages
Diff between startupmsg versions 0.7.2 dated 2011-10-19 and 0.8 dated 2013-02-07
Description: Utilities for start-up messages
Author: Peter Ruckdeschel
Maintainer: Peter Ruckdeschel
DESCRIPTION | 17 +++++------
MD5 | 6 ++--
inst/NEWS | 10 ++++++
tests/Examples/startupmsg-Ex.Rout.save | 48 ++++++++++++++++++++++-----------
4 files changed, 54 insertions(+), 27 deletions(-)
Title: Quantile regression neural network
Diff between qrnn versions 1.1.1 dated 2011-08-12 and 1.1.2 dated 2013-02-07
Description: Fit a quantile regression neural network with optional
left censoring using a variant of the finite smoothing
algorithm.
Author: Alex J. Cannon
Maintainer: Alex J. Cannon
DESCRIPTION | 6 +--
MD5 | 19 ++++++-----
NAMESPACE |only
R/qrnn.fit.R | 83 ++++++++++++++++++++++++++--------------------------
R/qrnn.nlm.R | 6 +--
man/YVRprecip.Rd | 18 +++++------
man/gam.style.Rd | 5 +--
man/qrnn-rbf.Rd | 3 +
man/qrnn.fit.Rd | 11 +++++-
man/qrnn.nlm.Rd | 6 +++
man/qrnn.predict.Rd | 3 +
11 files changed, 87 insertions(+), 73 deletions(-)
Title: Estimation and Testing classes based on package distr
Diff between distrTEst versions 2.3.1 dated 2011-10-19 and 2.4 dated 2013-02-07
Description: Evaluation (S4-)classes based on package distr for
evaluating procedures (estimators/tests) at data/simulation in
a unified way.
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
DESCRIPTION | 17 ++++-----
MD5 | 10 ++---
NAMESPACE | 2 -
inst/NEWS | 12 ++++++
man/0distrTEst-package.Rd | 6 +--
tests/Examples/distrTEst-Ex.Rout.save | 62 ++++++++++++++++++++++++----------
6 files changed, 74 insertions(+), 35 deletions(-)
Title: Extensions of package distr for teaching Stochastics/Statistics
in secondary school
Diff between distrTeach versions 2.3.1 dated 2011-10-19 and 2.4 dated 2013-02-07
Description: Extensions of package distr and some additional
functionality
Author: Peter Ruckdeschel, Matthias Kohl, Anja Hueller, Eleonara Feist
Maintainer: Peter Ruckdeschel
DESCRIPTION | 18 +++----
MD5 | 12 ++--
NAMESPACE | 2
inst/NEWS | 11 ++++
man/0distrTeach-package.Rd | 6 +-
man/IllustCLT.Rd | 6 ++
tests/Examples/distrTeach-Ex.Rout.save | 82 ++++++++++++++++++++++-----------
7 files changed, 90 insertions(+), 47 deletions(-)
Title: Simulation classes based on package distr
Diff between distrSim versions 2.3.1 dated 2011-10-19 and 2.4 dated 2013-02-07
Description: Simulation (S4-)classes based on package distr
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
DESCRIPTION | 18 ++++----
MD5 | 12 ++---
NAMESPACE | 2
R/AllClasses.R | 11 +----
inst/NEWS | 11 ++++-
man/0distrSim-package.Rd | 6 +-
tests/Examples/distrSim-Ex.Rout.save | 77 +++++++++++++++++++++++++++--------
7 files changed, 93 insertions(+), 44 deletions(-)
Title: Object oriented implementation of probability models
Diff between distrMod versions 2.3.1 dated 2011-02-15 and 2.4 dated 2013-02-07
Description: Object oriented implementation of probability models based
on packages 'distr' and 'distrEx'
Author: Matthias Kohl, Peter Ruckdeschel
Maintainer: Peter Ruckdeschel
distrMod-2.3.1/distrMod/inst/doc/Estimate.pdf |only
distrMod-2.3.1/distrMod/inst/doc/ParamFamParameter.pdf |only
distrMod-2.3.1/distrMod/inst/doc/ProbFamily.pdf |only
distrMod-2.3.1/distrMod/inst/doc/distrMod.bib |only
distrMod-2.3.1/distrMod/man/GumbelLocationFamily.Rd |only
distrMod-2.4/distrMod/.Rinstignore |only
distrMod-2.4/distrMod/DESCRIPTION | 20
distrMod-2.4/distrMod/MD5 |only
distrMod-2.4/distrMod/NAMESPACE | 17
distrMod-2.4/distrMod/R/0distrModOptions.R | 2
distrMod-2.4/distrMod/R/0distrModUtils.R | 35
distrMod-2.4/distrMod/R/AllClass.R | 36
distrMod-2.4/distrMod/R/AllGeneric.R | 15
distrMod-2.4/distrMod/R/AllReturnClasses.R | 9
distrMod-2.4/distrMod/R/AllShow.R | 12
distrMod-2.4/distrMod/R/Estimator.R | 29
distrMod-2.4/distrMod/R/L2GroupFamilies-methods.R | 33
distrMod-2.4/distrMod/R/L2GroupFamilies.R | 12
distrMod-2.4/distrMod/R/MCEstimator.R | 5
distrMod-2.4/distrMod/R/MDEstimator.R | 10
distrMod-2.4/distrMod/R/MLEstimator.R | 10
distrMod-2.4/distrMod/R/ParamFamParameter.R | 44
distrMod-2.4/distrMod/R/SimpleL2ParamFamilies.R | 79 -
distrMod-2.4/distrMod/R/alphaTransp.R |only
distrMod-2.4/distrMod/R/confint.R | 2
distrMod-2.4/distrMod/R/internalMleCalc.R | 33
distrMod-2.4/distrMod/R/mleCalc-methods.R | 33
distrMod-2.4/distrMod/R/modifyModel.R | 100 +
distrMod-2.4/distrMod/R/qqplot.R | 9
distrMod-2.4/distrMod/R/setAs.R | 7
distrMod-2.4/distrMod/R/validParameter.R | 45
distrMod-2.4/distrMod/distrMod-Ex.R | 204 +-
distrMod-2.4/distrMod/inst/NEWS | 62
distrMod-2.4/distrMod/inst/doc/distrMod.Rnw | 15
distrMod-2.4/distrMod/inst/doc/distrMod.pdf |binary
distrMod-2.4/distrMod/inst/scripts/example_CvMMDE.R | 26
distrMod-2.4/distrMod/inst/scripts/examples2.R | 7
distrMod-2.4/distrMod/inst/scripts/modelExp3.R | 3
distrMod-2.4/distrMod/man/0distrMod-package.Rd | 13
distrMod-2.4/distrMod/man/Estimator.Rd | 11
distrMod-2.4/distrMod/man/InternalReturnClasses-class.Rd | 17
distrMod-2.4/distrMod/man/L2LocationFamily-class.Rd | 2
distrMod-2.4/distrMod/man/L2LocationFamily.Rd | 2
distrMod-2.4/distrMod/man/MCEstimate-class.Rd | 3
distrMod-2.4/distrMod/man/MDEstimator.Rd | 9
distrMod-2.4/distrMod/man/MLEstimator.Rd | 8
distrMod-2.4/distrMod/man/ParamFamParameter-class.Rd | 24
distrMod-2.4/distrMod/man/ParamFamParameter.Rd | 12
distrMod-2.4/distrMod/man/ParamFamily.Rd | 34
distrMod-2.4/distrMod/man/addAlphTrsp2col.Rd |only
distrMod-2.4/distrMod/man/internalClassUnions-class.Rd | 24
distrMod-2.4/distrMod/man/internalmleHelpers.Rd | 19
distrMod-2.4/distrMod/man/internals.Rd | 4
distrMod-2.4/distrMod/man/mleCalc-methods.Rd | 8
distrMod-2.4/distrMod/man/modifyModel-methods.Rd | 5
distrMod-2.4/distrMod/man/qqplot.Rd | 11
distrMod-2.4/distrMod/man/trafo-methods.Rd | 4
distrMod-2.4/distrMod/man/validParameter-methods.Rd | 23
distrMod-2.4/distrMod/tests/Examples/distrMod-Ex.Rout.save | 915 +++++++++----
distrMod-2.4/distrMod/vignettes |only
60 files changed, 1411 insertions(+), 651 deletions(-)
Title: Extensions of package distr
Diff between distrEx versions 2.3.1 dated 2011-10-19 and 2.4 dated 2013-02-07
Description: Extensions of package distr and some additional
functionality
Author: Matthias Kohl, Peter Ruckdeschel, Nataliya Horbenko
Maintainer: Matthias Kohl
distrEx-2.3.1/distrEx/R/AllInitialize.R |only
distrEx-2.3.1/distrEx/R/GEV.R |only
distrEx-2.3.1/distrEx/R/GPareto.R |only
distrEx-2.3.1/distrEx/R/Gumbel.R |only
distrEx-2.3.1/distrEx/R/Pareto.R |only
distrEx-2.3.1/distrEx/R/kMAD.R |only
distrEx-2.3.1/distrEx/man/GEV-class.Rd |only
distrEx-2.3.1/distrEx/man/GEV.Rd |only
distrEx-2.3.1/distrEx/man/GEVParameter-class.Rd |only
distrEx-2.3.1/distrEx/man/GPareto-class.Rd |only
distrEx-2.3.1/distrEx/man/GPareto.Rd |only
distrEx-2.3.1/distrEx/man/GParetoParameter-class.Rd |only
distrEx-2.3.1/distrEx/man/Gumbel-class.Rd |only
distrEx-2.3.1/distrEx/man/Gumbel.Rd |only
distrEx-2.3.1/distrEx/man/GumbelParameter-class.Rd |only
distrEx-2.3.1/distrEx/man/Pareto-class.Rd |only
distrEx-2.3.1/distrEx/man/Pareto.Rd |only
distrEx-2.3.1/distrEx/man/ParetoParameter-class.Rd |only
distrEx-2.3.1/distrEx/man/distrExConstants.Rd |only
distrEx-2.3.1/distrEx/man/kMAD.Rd |only
distrEx-2.3.1/distrEx/src/kMad.c |only
distrEx-2.4/distrEx/DESCRIPTION | 21
distrEx-2.4/distrEx/MD5 | 64 -
distrEx-2.4/distrEx/NAMESPACE | 24
distrEx-2.4/distrEx/R/AllClass.R | 212 ----
distrEx-2.4/distrEx/R/AllGeneric.R | 21
distrEx-2.4/distrEx/R/Expectation.R | 142 ---
distrEx-2.4/distrEx/R/Functionals.R | 94 --
distrEx-2.4/distrEx/R/Kurtosis.R | 71 -
distrEx-2.4/distrEx/R/Skewness.R | 73 -
distrEx-2.4/distrEx/R/moved2RobExtremes.R |only
distrEx-2.4/distrEx/R/sysdata.rda |binary
distrEx-2.4/distrEx/distrEx-Ex.R | 391 --------
distrEx-2.4/distrEx/inst/MOVED |only
distrEx-2.4/distrEx/inst/NEWS | 21
distrEx-2.4/distrEx/man/0distrEx-package.Rd | 15
distrEx-2.4/distrEx/man/AsymTotalVarDist.Rd | 3
distrEx-2.4/distrEx/man/CvMDist.Rd | 6
distrEx-2.4/distrEx/man/HellingerDist.Rd | 3
distrEx-2.4/distrEx/man/KolmogorovDist.Rd | 3
distrEx-2.4/distrEx/man/OAsymTotalVarDist.Rd | 3
distrEx-2.4/distrEx/man/TotalVarDist.Rd | 3
distrEx-2.4/distrEx/man/Var.Rd | 108 --
distrEx-2.4/distrEx/man/distrExMOVED.Rd |only
distrEx-2.4/distrEx/tests/Examples/distrEx-Ex.Rout.save | 724 +++++-----------
45 files changed, 397 insertions(+), 1605 deletions(-)
Title: S4 classes for elliptically contoured distributions
Diff between distrEllipse versions 2.3.1 dated 2011-10-19 and 2.4 dated 2013-02-07
Description: Distribution (S4-)classes for elliptically contoured
distributions (based on package distr)
Author: Peter Ruckdeschel
Maintainer: Peter Ruckdeschel
DESCRIPTION | 12 +-
MD5 | 10 +-
NAMESPACE | 2
inst/NEWS | 11 ++
man/0distrEllipse-package.Rd | 6 -
tests/Examples/distrEllipse-Ex.Rout.save | 152 ++++++++++++++++++++++++-------
6 files changed, 144 insertions(+), 49 deletions(-)
Title: Documentation for packages distr, distrEx, distrSim, distrTEst,
distrTeach, distrMod, and distrEllipse
Diff between distrDoc versions 2.3.3 dated 2012-01-16 and 2.4 dated 2013-02-07
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst,
distrTeach, and distrEllipse
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
.Rinstignore |only
DESCRIPTION | 16 +++++------
MD5 | 14 ++++-----
NAMESPACE | 1
inst/NEWS | 27 ++++++++++++++++++
inst/doc/distr.Rnw | 68 +++++++++++++++++++++++++++++++++--------------
inst/doc/distr.pdf |binary
man/0distrDoc-package.Rd | 6 ++--
vignettes/distr.Rnw | 68 +++++++++++++++++++++++++++++++++--------------
9 files changed, 143 insertions(+), 57 deletions(-)
Title: Object oriented implementation of distributions
Diff between distr versions 2.3.3 dated 2011-10-19 and 2.4 dated 2013-02-07
Description: S4 Classes and Methods for distributions
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
distr-2.3.3/distr/inst/doc/svn-multi.sty |only
distr-2.3.3/distr/inst/doc/svnkw.sty |only
distr-2.4/distr/DESCRIPTION | 18
distr-2.4/distr/MD5 | 56 -
distr-2.4/distr/R/0distrOptions.R | 6
distr-2.4/distr/R/AllClasses.R | 5
distr-2.4/distr/R/AllInitialize.R | 12
distr-2.4/distr/R/DiscreteDistribution.R | 1
distr-2.4/distr/R/LatticeDistribution.R | 12
distr-2.4/distr/R/bAcDcLcDistribution.R | 90 +-
distr-2.4/distr/R/internalUtils.R | 43 -
distr-2.4/distr/R/internals-qqplot.R | 50 -
distr-2.4/distr/R/plot-methods.R | 90 ++
distr-2.4/distr/R/plot-methods_LebDec.R | 83 +-
distr-2.4/distr/R/qqbounds.R | 12
distr-2.4/distr/R/qqplot.R | 1
distr-2.4/distr/Rinstignore |only
distr-2.4/distr/demo/nFoldConvolution.R | 4
distr-2.4/distr/distr-Ex.R | 8
distr-2.4/distr/inst/NEWS | 52 +
distr-2.4/distr/inst/doc/newDistributions.Rnw | 8
distr-2.4/distr/inst/doc/newDistributions.pdf |binary
distr-2.4/distr/man/0distr-package.Rd | 6
distr-2.4/distr/man/Beta-class.Rd | 2
distr-2.4/distr/man/distroptions.Rd | 4
distr-2.4/distr/man/operators-methods.Rd | 4
distr-2.4/distr/man/plot-methods.Rd | 24
distr-2.4/distr/man/qqplot.Rd | 6
distr-2.4/distr/tests/Examples/distr-Ex.Rout.save | 854 ++++++++++++++--------
distr-2.4/distr/vignettes |only
30 files changed, 1011 insertions(+), 440 deletions(-)
Title: Bead filtering for Illumina bead arrays
Diff between beadarrayFilter versions 1.0 dated 2012-07-04 and 1.1.0 dated 2013-02-07
More information about beadarrayFilter at CRAN
Description: This package contains functions to fit the filtering model
of Forcheh et al., (2012) which is used to derive the
intra-cluster correlation (ICC). Model fitting is done using
the modified version of the ``MLM.beadarray" function of Kim
and Lin (2011).
Author: Anyiawung Chiara Forcheh, Geert Verbeke, Adetayo Kasim, Dan
Lin, Ziv Shkedy, Willem Talloen, Hinrich WH Gohlmann, Lieven
Clement.
Maintainer: Lieven Clement
beadarrayFilter-1.0/beadarrayFilter/R/beadFilter.R |only
beadarrayFilter-1.0/beadarrayFilter/man/beadFilter.Rd |only
beadarrayFilter-1.1.0/beadarrayFilter/DESCRIPTION | 12 +++---
beadarrayFilter-1.1.0/beadarrayFilter/MD5 | 16 ++++----
beadarrayFilter-1.1.0/beadarrayFilter/R/MLM.beadarray.R | 2 -
beadarrayFilter-1.1.0/beadarrayFilter/R/beadtypeFilter.R |only
beadarrayFilter-1.1.0/beadarrayFilter/man/MLM.beadarray.Rd | 11 +++--
beadarrayFilter-1.1.0/beadarrayFilter/man/beadtypeFilter.Rd |only
beadarrayFilter-1.1.0/beadarrayFilter/man/emCDF.Rd | 20 +++++-----
beadarrayFilter-1.1.0/beadarrayFilter/man/iccFun.Rd | 24 ++++++------
beadarrayFilter-1.1.0/beadarrayFilter/man/varianceplot.Rd | 14 +++----
11 files changed, 50 insertions(+), 49 deletions(-)
Permanent link
Title: Statistical inference of vine copulas
Diff between VineCopula versions 1.1 dated 2013-02-04 and 1.1-1 dated 2013-02-07
Description: This package provides functions for statistical inference
of vine copulas. It contains tools for bivariate exploratory
data analysis, bivariate copula selection and (vine) tree
construction. Models can be estimated either sequentially or by
joint maximum likelihood estimation. Sampling algorithms and
plotting methods are also included. Data is assumed to lie in
the unit hypercube (so-called copula data). For C- and D-vines
links to the package CDVine are provided.
Author: Ulf Schepsmeier, Jakob Stoeber, Eike Christian Brechmann
Maintainer: Ulf Schepsmeier
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
VineCopula.pdf |binary
inst/ChangeLog | 8 +++++++-
man/VineCopula-package.Rd | 4 ++--
src/hfunc.c | 29 ++++++++++++-----------------
src/include/hfunc.h | 2 +-
7 files changed, 32 insertions(+), 31 deletions(-)
Title: 3D visualization device system (OpenGL)
Diff between rgl versions 0.93.921 dated 2013-01-26 and 0.93.928 dated 2013-02-07
Description: 3D visualization device (OpenGL)
Author: Daniel Adler
Maintainer: Duncan Murdoch
DESCRIPTION | 8
MD5 | 20 -
configure | 239 ++++++++++---------
configure.ac | 8
inst/NEWS | 7
src/api.cpp | 4
src/build/autoconf/config.guess | 494 ++++++++++++++++++++--------------------
src/build/autoconf/config.sub | 275 ++++++++++++++++------
src/build/autoconf/install-sh | 38 +--
src/win32gui.cpp | 8
src/x11gui.cpp | 8
11 files changed, 632 insertions(+), 477 deletions(-)
Title: Complex survey structural equation modeling (SEM)
Diff between lavaan.survey versions 0.5 dated 2012-10-27 and 0.7 dated 2013-02-07
Description: Fit structural equation models (SEM) including factor
analysis, multivariate regression models with latent variables
and many other latent variable models while correcting
estimates, standard errors, and chi-square-derived fit measures
for a complex sampling design. Incorporate clustering,
stratification, sampling weights, and finite population
corrections into a SEM analysis. Wrapper around packages
lavaan and survey.
Author: Daniel Oberski
Maintainer: Daniel Oberski
lavaan.survey-0.5/lavaan.survey/R/subset.survey.design.R |only
lavaan.survey-0.5/lavaan.survey/man/subset.survey.design.Rd |only
lavaan.survey-0.7/lavaan.survey/DESCRIPTION | 10
lavaan.survey-0.7/lavaan.survey/MD5 | 8
lavaan.survey-0.7/lavaan.survey/R/lavaan.survey.R | 179 +++++++++---
lavaan.survey-0.7/lavaan.survey/man/lavaan.survey.Rd | 163 +++++++---
6 files changed, 268 insertions(+), 92 deletions(-)
Title: Functional Data Analysis and Utilities for Statistical Computing
(fda.usc)
Diff between fda.usc versions 1.0.3 dated 2013-01-29 and 1.0.4 dated 2013-02-07
Description: The R package fda.usc carries out exploratory and
descriptive analysis of functional data such as depth
measurements or functional atypical curves detection, functions
to compute functional regression models with a scalar response,
supervised and unsupervised classification methods and
functional analysis of variance.
Author: Manuel Febrero-Bande, Manuel Oviedo de la Fuente
Maintainer: Manuel Oviedo de la Fuente
fda.usc-1.0.3/fda.usc/R/predict.fregre.fd.R |only
fda.usc-1.0.4/fda.usc/DESCRIPTION | 8 +--
fda.usc-1.0.4/fda.usc/MD5 | 27 +++++-----
fda.usc-1.0.4/fda.usc/NEWS | 5 +
fda.usc-1.0.4/fda.usc/R/PPC.PPLS.R | 21 +++++--
fda.usc-1.0.4/fda.usc/R/fregre.PPC.PPLS.R |only
fda.usc-1.0.4/fda.usc/R/fregre.glm.R | 9 ++-
fda.usc-1.0.4/fda.usc/R/fregre.lm.R | 69 +++++++++++++++++---------
fda.usc-1.0.4/fda.usc/R/fregre.pls.R | 4 +
fda.usc-1.0.4/fda.usc/R/outliers.depth.pond.r | 21 ++++---
fda.usc-1.0.4/fda.usc/R/outliers.depth.trim.r | 28 +++++-----
fda.usc-1.0.4/fda.usc/R/outliers.lrt.r | 2
fda.usc-1.0.4/fda.usc/R/predict.fregre.fd.r |only
fda.usc-1.0.4/fda.usc/R/summary.fregre.fd.r | 22 ++++----
fda.usc-1.0.4/fda.usc/man/Outliers.fdata.Rd | 6 +-
fda.usc-1.0.4/fda.usc/man/fda.usc-package.Rd | 5 -
16 files changed, 141 insertions(+), 86 deletions(-)
Title: Visualisations of sequential probability distributions.
Diff between fanplot versions 1.1 dated 2012-08-02 and 1.2 dated 2013-02-07
Description: The fanplot package contains a collection of R functions
to effectively display plots of sequential distributions such
as probabilistic forecasts. The plotting of distributions are
based around two functions. The first, pn, calculates the
percentiles for a set of sequential distributions over a
specified time period. The second, fan, plots the calculated
percentiles of the sequential distributions. The resulting plot
is a set of coloured polygon, with shadings corresponding to
the percentile values.
Author: Guy J. Abel
Maintainer: "Guy J. Abel"
fanplot-1.1/fanplot/data/ew.rda |only
fanplot-1.1/fanplot/data/pnew.mcmc.rda |only
fanplot-1.1/fanplot/data/rnew.mcmc.rda |only
fanplot-1.1/fanplot/data/svpdx.rda |only
fanplot-1.1/fanplot/data/y.mcmc.rda |only
fanplot-1.1/fanplot/inst/model/ew.txt |only
fanplot-1.1/fanplot/man/ew.Rd |only
fanplot-1.1/fanplot/man/pnew.mcmc.Rd |only
fanplot-1.1/fanplot/man/rnew.mcmc.Rd |only
fanplot-1.1/fanplot/man/svpdx.Rd |only
fanplot-1.1/fanplot/man/y.mcmc.Rd |only
fanplot-1.2/fanplot/DESCRIPTION | 11 -
fanplot-1.2/fanplot/MD5 | 31 +--
fanplot-1.2/fanplot/R/fanplot-internal.R | 251 +++++++++++++--------------
fanplot-1.2/fanplot/data/datalist | 5
fanplot-1.2/fanplot/data/th.mcmc.rda |binary
fanplot-1.2/fanplot/inst/doc/fanplot.Rnw | 98 ++++++----
fanplot-1.2/fanplot/inst/doc/fanplot.bib | 284 ++++++++++++++++++-------------
fanplot-1.2/fanplot/inst/doc/fanplot.pdf |binary
fanplot-1.2/fanplot/man/fan.Rd | 32 +++
fanplot-1.2/fanplot/man/pn.Rd | 33 +++
fanplot-1.2/fanplot/man/th.mcmc.Rd | 6
22 files changed, 430 insertions(+), 321 deletions(-)
Title: Estimation and simulation of CARMA(p,q)
Diff between ctarma versions 0.1.3 dated 2012-12-17 and 0.1.4 dated 2013-02-07
Description: Estimation and simulation of CARMA(p,q),
continuous-time-autoregressive-moving-average models
Author: Helgi Tomasson
Maintainer: Helgi Tomasson
DESCRIPTION | 10 ++++----
MD5 | 54 ++++++++++++++++++++++-----------------------
NEWS | 18 +++++++++------
R/car1.r | 2 -
R/carma-add-parameter.r | 2 -
R/carma.loglik.nondiagp.r | 2 -
R/carma.loglik.r | 2 -
R/carma.loglik2.r | 2 -
R/carma.loglikscor.r | 2 -
R/carma.maxlik.bht1.r | 2 -
R/carma.resid.r | 2 -
R/carma.spectrum1.r | 2 -
R/carma.starting.values.r | 4 +--
R/carma.startingA.values.r | 4 +--
R/ctarma.default.r | 16 ++++++-------
R/onload.r | 2 -
R/specirreg.r | 8 +++---
R/xtprocess1.r | 2 -
R/zexpm.r | 2 -
man/carma.bht.rd | 2 -
man/carma.increase.pq.rd | 2 -
man/carma.sim.freq1.rd | 13 ++++++----
man/carma.sim.freq2.rd | 13 ++++++----
man/ctarma.acf.rd | 2 -
man/ctarma.new.rd | 2 -
man/ctarma.specirreg.rd | 2 -
man/ctarma.spectrum.rd | 2 -
man/ctarma.whittle.rd | 2 -
28 files changed, 94 insertions(+), 84 deletions(-)
Title: R Commander
Diff between Rcmdr versions 1.9-4 dated 2013-01-25 and 1.9-5 dated 2013-02-07
Description: A platform-independent basic-statistics GUI (graphical
user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre], Liviu Andronic [ctb], Michael Ash [ctb],
Milan Bouchet-Valat [ctb], Theophilius Boye [ctb], Stefano
Calza [ctb], Andy Chang [ctb], Philippe Grosjean [ctb], Richard
Heiberger [ctb], Kosar Karimi Pour [ctb], G. Jay Kerns [ctb],
Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], Uwe Ligges
[ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert
Muenchen [ctb], Duncan Murdoch [ctb], Erich Neuwirth [ctb], Dan
Putler [ctb], Brian Ripley [ctb], Miroslav Ristic [ctb], Peter
Wolf [ctb]
Maintainer: John Fox
DESCRIPTION | 11 +
MD5 | 12 +-
NEWS | 304 ++++++++++++++++++++++++++-------------------------
R/commander.R | 7 -
R/startup.R | 266 ++++++++++++++++++++++----------------------
R/utilities.R | 10 +
man/Rcmdr-package.Rd | 124 ++++++++++----------
7 files changed, 375 insertions(+), 359 deletions(-)
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Diff between HSAUR2 versions 1.1-1 dated 2012-03-03 and 1.1-2 dated 2013-02-07
Description: Functions, data sets, analyses and examples from the
second edition of the book `A Handbook of Statistical Analyses
Using R' (Brian S. Everitt and Torsten Hothorn, Chapman &
Hall/CRC, 2008). The first chapter of the book, which is
entitled `An Introduction to R', is completely included in this
package, for all other chapters, a vignette containing all data
analyses is available. In addition, the package contains Sweave
code for producing slides for selected chapters (see
HSAUR2/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
DESCRIPTION | 12 +-
MD5 | 140 ++++++++++++++++----------
data/BCG.rda |binary
data/CYGOB1.rda |binary
data/Lanza.rda |binary
data/birthdeathrates.rda |binary
data/bladdercancer.rda |binary
data/epilepsy.rda |binary
data/foster.rda |binary
data/heptathlon.rda |binary
data/meteo.rda |binary
data/orallesions.rda |binary
data/phosphate.rda |binary
data/pistonrings.rda |binary
data/planets.rda |binary
data/plasma.rda |binary
data/polyps.rda |binary
data/rearrests.rda |binary
data/roomwidth.rda |binary
data/schizophrenia.rda |binary
data/schizophrenia2.rda |binary
data/smoking.rda |binary
data/students.rda |binary
data/suicides.rda |binary
data/toothpaste.rda |binary
data/voting.rda |binary
data/water.rda |binary
data/watervoles.rda |binary
data/waves.rda |binary
data/weightgain.rda |binary
inst/CHANGES | 4
inst/LaTeXBibTeX |only
inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary
inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary
inst/doc/Ch_analysis_of_variance.pdf |binary
inst/doc/Ch_cluster_analysis.pdf |binary
inst/doc/Ch_conditional_inference.pdf |binary
inst/doc/Ch_density_estimation.pdf |binary
inst/doc/Ch_errata.pdf |binary
inst/doc/Ch_gam.pdf |binary
inst/doc/Ch_graphical_display.pdf |binary
inst/doc/Ch_introduction_to_R.pdf |binary
inst/doc/Ch_logistic_regression_glm.pdf |binary
inst/doc/Ch_meta_analysis.pdf |binary
inst/doc/Ch_multidimensional_scaling.pdf |binary
inst/doc/Ch_multiple_linear_regression.pdf |binary
inst/doc/Ch_principal_components_analysis.pdf |binary
inst/doc/Ch_recursive_partitioning.pdf |binary
inst/doc/Ch_simple_inference.pdf |binary
inst/doc/Ch_simultaneous_inference.pdf |binary
inst/doc/Ch_survival_analysis.pdf |binary
inst/slides |only
vignettes/LaTeXBibTeX/HSAUR.bib | 103 ++++++++++---------
vignettes/LaTeXBibTeX/HSAUR.in | 9 +
vignettes/tables/rec.tex | 14 +-
55 files changed, 171 insertions(+), 111 deletions(-)
Title: Workspace organization, code and documentation editing, package
prep and editing, etc.
Diff between mvbutils versions 2.5.101 dated 2011-11-02 and 2.7.4 dated 2013-02-07
Description: Hierarchical workspace tree, code editing and backup, easy
package prep, editing of packages while loaded, per-object
lazy-loading, easy documentation, macro functions, and
miscellaneous utilities. Needed by debug package.
Author: Mark V. Bravington
Maintainer: Mark V. Bravington
mvbutils-2.5.101/mvbutils/R/sysdata.rda |only
mvbutils-2.5.101/mvbutils/man/Hours.Rd |only
mvbutils-2.5.101/mvbutils/man/my.package.path.Rd |only
mvbutils-2.7.4/mvbutils/DESCRIPTION | 14
mvbutils-2.7.4/mvbutils/INDEX | 12
mvbutils-2.7.4/mvbutils/MD5 | 115
mvbutils-2.7.4/mvbutils/NAMESPACE | 54
mvbutils-2.7.4/mvbutils/R/mvbutils.R | 2371 ++++++++-------
mvbutils-2.7.4/mvbutils/inst/changes.txt | 6
mvbutils-2.7.4/mvbutils/man/00mvbutils-package.Rd | 46
mvbutils-2.7.4/mvbutils/man/add.flatdoc.to.Rd | 18
mvbutils-2.7.4/mvbutils/man/cd.Rd | 23
mvbutils-2.7.4/mvbutils/man/cdfind.Rd | 2
mvbutils-2.7.4/mvbutils/man/cdprompt.Rd | 14
mvbutils-2.7.4/mvbutils/man/changed.funs.Rd | 2
mvbutils-2.7.4/mvbutils/man/ditto.list.Rd |only
mvbutils-2.7.4/mvbutils/man/do.in.envir.Rd | 12
mvbutils-2.7.4/mvbutils/man/doc2Rd.Rd | 79
mvbutils-2.7.4/mvbutils/man/dochelp.Rd | 26
mvbutils-2.7.4/mvbutils/man/dont.lock.me.Rd | 12
mvbutils-2.7.4/mvbutils/man/dont.lockBindings.Rd | 14
mvbutils-2.7.4/mvbutils/man/extract.named.Rd | 12
mvbutils-2.7.4/mvbutils/man/fast.read.fwf.Rd | 6
mvbutils-2.7.4/mvbutils/man/find.documented.Rd | 15
mvbutils-2.7.4/mvbutils/man/fix.order.Rd | 23
mvbutils-2.7.4/mvbutils/man/fixr.Rd | 122
mvbutils-2.7.4/mvbutils/man/flatdoc.Rd | 13
mvbutils-2.7.4/mvbutils/man/full.path.Rd | 9
mvbutils-2.7.4/mvbutils/man/get.backup.Rd | 11
mvbutils-2.7.4/mvbutils/man/hack.Rd | 14
mvbutils-2.7.4/mvbutils/man/help.Rd |only
mvbutils-2.7.4/mvbutils/man/help2flatdoc.Rd | 14
mvbutils-2.7.4/mvbutils/man/install.pkg.Rd | 37
mvbutils-2.7.4/mvbutils/man/load.refdb.Rd | 12
mvbutils-2.7.4/mvbutils/man/local.on.exit.Rd | 9
mvbutils-2.7.4/mvbutils/man/local.return.Rd | 12
mvbutils-2.7.4/mvbutils/man/localfuncs.Rd | 15
mvbutils-2.7.4/mvbutils/man/maintain.packages.Rd | 36
mvbutils-2.7.4/mvbutils/man/make.NAMESPACE.Rd | 11
mvbutils-2.7.4/mvbutils/man/mcut.Rd | 6
mvbutils-2.7.4/mvbutils/man/mlocal.Rd | 10
mvbutils-2.7.4/mvbutils/man/move.Rd | 14
mvbutils-2.7.4/mvbutils/man/multirep.Rd | 6
mvbutils-2.7.4/mvbutils/man/mvb.sys.parent.Rd | 23
mvbutils-2.7.4/mvbutils/man/mvbutils.packaging.tools.Rd | 81
mvbutils-2.7.4/mvbutils/man/mvbutils.utils.Rd | 103
mvbutils-2.7.4/mvbutils/man/my.index.Rd | 18
mvbutils-2.7.4/mvbutils/man/pre.install.Rd | 62
mvbutils-2.7.4/mvbutils/man/print.Rd |only
mvbutils-2.7.4/mvbutils/man/rbdf.Rd |only
mvbutils-2.7.4/mvbutils/man/readLines.mvb.Rd | 19
mvbutils-2.7.4/mvbutils/man/rm.pkg.Rd | 17
mvbutils-2.7.4/mvbutils/man/search.for.regexpr.Rd | 17
mvbutils-2.7.4/mvbutils/man/search.task.trees.Rd | 15
mvbutils-2.7.4/mvbutils/man/set.presave.hook.mvb.Rd | 11
mvbutils-2.7.4/mvbutils/man/setup.mcache.Rd | 15
mvbutils-2.7.4/mvbutils/man/source.mvb.Rd | 24
mvbutils-2.7.4/mvbutils/man/strip.missing.Rd | 18
mvbutils-2.7.4/mvbutils/man/task.home.Rd | 12
mvbutils-2.7.4/mvbutils/man/unpackage.Rd | 9
mvbutils-2.7.4/mvbutils/man/warn.and.subset.Rd | 13
mvbutils-2.7.4/mvbutils/man/write.sourceable.function.Rd | 12
62 files changed, 2135 insertions(+), 1561 deletions(-)
Title: Implementation of POSIXct work-alike for 365 and 360 day
calendars.
Diff between PCICt versions 0.3-2 dated 2011-11-10 and 0.5-3 dated 2013-02-07
Description: This package implements a work-alike to R's POSIXct class
which implements 360- and 365-day calendars in addition to the
gregorian calendar.
Author: David Bronaugh
Maintainer: David Bronaugh
PCICt-0.3-2/PCICt/.hgtags |only
PCICt-0.3-2/PCICt/man/c.PCICt.Rd |only
PCICt-0.5-3/PCICt/CHANGELOG | 8
PCICt-0.5-3/PCICt/DESCRIPTION | 20 -
PCICt-0.5-3/PCICt/MD5 | 16
PCICt-0.5-3/PCICt/NAMESPACE | 23 +
PCICt-0.5-3/PCICt/R/PCICt.R | 655 ++++++++++++++++++++++++++++++++++----
PCICt-0.5-3/PCICt/man/as.PCICt.Rd | 25 +
PCICt-0.5-3/PCICt/man/round.Rd |only
PCICt-0.5-3/PCICt/src |only
PCICt-0.5-3/PCICt/tests |only
11 files changed, 672 insertions(+), 75 deletions(-)
Title: Analyze Multinomial Processing Tree Models
Diff between MPTinR versions 0.9.4 dated 2012-07-23 and 1.0.1 dated 2013-02-07
Description: MPTinR provides a user-friendly way for the analysis of
multinomial processing tree (MPT) models (e.g., Riefer, D. M.,
and Batchelder, W. H. [1988]. Multinomial modeling and the
measurement of cognitive processes. Psychological Review, 95,
318-339) for single and multiple datasets. The main functions
perform model fitting and model selection. Model selection can
be done using AIC, BIC, or the Fisher Information Approximation
(FIA) a measure based on the Minimum Description Length (MDL)
framework. The model and restrictions can specified in external
files or within an R script in an intuitive syntax. The
'classical' .EQN file format for model files is also supported.
Besides MPTs, MPTinR can fit a wide variety of other cognitive
models such as SDT models (see fit.model). MPTinR supports
multicore fitting using the snowfall package. MPTinR can
generate data generating from a model for e.g., parametric
bootstrap and plot predicted versus observed data.
Author: Henrik Singmann and David Kellen
Maintainer: Henrik Singmann
ChangeLog | 24 +++++++++++
DESCRIPTION | 13 +++---
MD5 | 29 +++++++------
NEWS | 39 ++++++++++++++++++
R/fit.mptinr.R | 2
R/make.eqn.R | 4 +
R/prediction.plot.R |only
R/read.MPT.restrictions.R | 4 +
R/select.mpt.R | 96 +++++++++++++++++++++++++++++++++++-----------
data/d.broeder.rda |binary
data/rb.fig1.data.rda |binary
data/rb.fig2.data.rda |binary
inst/CITATION |only
man/MPTinR-package.Rd | 6 +-
man/fit.mpt.Rd | 2
man/prediction.plot.Rd |only
man/select.mpt.Rd | 38 +++++++++++++++++-
17 files changed, 209 insertions(+), 48 deletions(-)
Title: MVB's debugger for R
Diff between debug versions 1.2.40 dated 2011-10-27 and 1.3.1 dated 2013-02-07
Description: Debugger for R functions, with code display, graceful
error recovery, line-numbered conditional breakpoints, access
to exit code, flow control, and full keyboard input.
Author: Mark V. Bravington
Maintainer: Mark V. Bravington
DESCRIPTION | 10
INDEX | 23
MD5 | 19
NAMESPACE | 6
R/debug.R | 3536 +++++++++++++++++++++++++------------------------
R/sysdata.rda |binary
inst/changes.txt | 4
man/00debug-package.Rd | 28
man/debug.C.Rd | 8
man/debug.eval.Rd |only
man/mtrace.Rd | 21
11 files changed, 1908 insertions(+), 1747 deletions(-)
Title: PCIC implementation of Climdex routines
Diff between climdex.pcic versions 0.4-1 dated 2011-11-10 and 0.6-2 dated 2013-02-07
Description: The pcic_climdex package provides PCIC's implementation of
Climdex routines for computation of climate indices.
Author: David Bronaugh
Maintainer: David Bronaugh
CHANGELOG | 25 +
DESCRIPTION | 16
MD5 | 40 +
NAMESPACE | 2
R/climdex.r | 613 +++++++++++++++++++---------
man/climdex.cdd.Rd | 12
man/climdex.dtr.Rd | 10
man/climdex.gsl.Rd | 42 +
man/climdex.quantile.Rd |only
man/climdex.rx5day.Rd | 22 -
man/climdex.tn10p.Rd | 29 -
man/climdex.txx.Rd | 17
man/climdex.wsdi.Rd | 12
man/climdexInput-class.Rd | 16
man/climdexInput.raw.Rd | 84 ++-
man/freq.to.factor.Rd |only
man/get.series.length.at.ends.Rd |only
man/growing.season.length.Rd |only
man/nday.consec.prec.max.Rd |only
man/number.days.op.threshold.Rd |only
man/percent.days.op.threshold.Rd |only
man/select.blocks.gt.length.Rd |only
man/simple.precipitation.intensity.index.Rd |only
man/spell.length.max.Rd |only
man/threshold.exceedance.duration.index.Rd |only
man/total.precip.op.threshold.Rd |only
src/zhang_running_quantile.cc | 26 +
27 files changed, 660 insertions(+), 306 deletions(-)
Title: Procedures to generate IRT adaptive tests (CAT)
Diff between catR versions 2.4 dated 2013-01-17 and 2.5 dated 2013-02-07
Description: The catR package allows the generation of response
patterns under computerized adaptive testing (CAT) framework,
with the choice of several starting rules, next item selection
routines, stopping rules and ability estimators. Control
methods for item exposure and content balancing are also
included.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada)
Maintainer: David Magis
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 21 ++++++++++++++++++++-
R/MWI.R | 4 ++--
inst/doc/catR-manual.pdf |binary
man/nextItem.Rd | 6 +++---
6 files changed, 34 insertions(+), 15 deletions(-)
Title: A package for statistical analysis in epidemiology.
Diff between Epi versions 1.1.40 dated 2012-11-05 and 1.1.44 dated 2013-02-07
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data,
including interval censored data and representation of
multistate data. Also some useful functions for tabulation and
plotting. Contains some epidemiological datasets.
Author: Bendix Carstensen [aut, cre], Martyn Plummer [aut], Michael
Hills [aut], Esa Laara [ctb]
Maintainer: Bendix Carstensen
Epi-1.1.40/Epi/R/MS.boxes.R |only
Epi-1.1.40/Epi/man/MS.boxes.Rd |only
Epi-1.1.44/Epi/CHANGES | 46 +
Epi-1.1.44/Epi/DESCRIPTION | 8
Epi-1.1.44/Epi/MD5 | 94 +--
Epi-1.1.44/Epi/NAMESPACE | 6
Epi-1.1.44/Epi/R/Lexis.diagram.R | 58 +-
Epi-1.1.44/Epi/R/Lexis.lines.R | 22
Epi-1.1.44/Epi/R/N2Y.r | 20
Epi-1.1.44/Epi/R/ROC.R | 518 +++++++++---------
Epi-1.1.44/Epi/R/boxes.MS.R |only
Epi-1.1.44/Epi/R/ccwc.R | 46 -
Epi-1.1.44/Epi/R/clogistic.R | 4
Epi-1.1.44/Epi/R/factorize.R | 47 +
Epi-1.1.44/Epi/R/stack.Lexis.R | 24
Epi-1.1.44/Epi/R/summary.Lexis.r | 27
Epi-1.1.44/Epi/inst/doc/Follow-up.pdf | 927 ++++++++++++++++------------------
Epi-1.1.44/Epi/man/Lexis.Rd | 36 -
Epi-1.1.44/Epi/man/Lexis.diagram.Rd | 2
Epi-1.1.44/Epi/man/Lexis.lines.Rd | 2
Epi-1.1.44/Epi/man/M.dk.Rd | 7
Epi-1.1.44/Epi/man/ROC.Rd | 41 -
Epi-1.1.44/Epi/man/Y.dk.Rd | 5
Epi-1.1.44/Epi/man/apc.fit.Rd | 5
Epi-1.1.44/Epi/man/apc.frame.Rd | 17
Epi-1.1.44/Epi/man/apc.lines.Rd | 2
Epi-1.1.44/Epi/man/apc.plot.Rd | 15
Epi-1.1.44/Epi/man/boxes.MS.Rd |only
Epi-1.1.44/Epi/man/brv.Rd | 38 -
Epi-1.1.44/Epi/man/cal.yr.Rd | 4
Epi-1.1.44/Epi/man/ccwc.Rd | 11
Epi-1.1.44/Epi/man/ci.cum.Rd | 2
Epi-1.1.44/Epi/man/ci.pd.Rd | 2
Epi-1.1.44/Epi/man/cutLexis.Rd | 6
Epi-1.1.44/Epi/man/detrend.Rd | 2
Epi-1.1.44/Epi/man/float.Rd | 2
Epi-1.1.44/Epi/man/foreign.Lexis.Rd | 10
Epi-1.1.44/Epi/man/lungDK.Rd | 3
Epi-1.1.44/Epi/man/ncut.Rd | 8
Epi-1.1.44/Epi/man/nice.Rd | 2
Epi-1.1.44/Epi/man/pctab.Rd | 4
Epi-1.1.44/Epi/man/plotEst.Rd | 4
Epi-1.1.44/Epi/man/projection.ip.rd | 2
Epi-1.1.44/Epi/man/rateplot.Rd | 2
Epi-1.1.44/Epi/man/stack.Lexis.Rd | 17
Epi-1.1.44/Epi/man/start.Lexis.Rd | 2
Epi-1.1.44/Epi/man/subset.Lexis.Rd | 13
Epi-1.1.44/Epi/man/summary.Lexis.rd | 34 -
Epi-1.1.44/Epi/man/thoro.Rd | 38 -
Epi-1.1.44/Epi/man/transform.Lexis.Rd | 16
50 files changed, 1182 insertions(+), 1019 deletions(-)
Title: Ordinal Dominance Statistics
Diff between orddom versions 3.0 dated 2012-04-22 and 3.1 dated 2013-02-07
Description: Computes ordinal, statistics and effect sizes as an
alternative to mean comparison: Cliff's delta or success rate
difference (SRD), Vargha and Delaney's A or the Area Under a
Receiver Operating Characteristic Curve (AUC), the discrete
type of McGraw & Wong's Common Language Effect Size (CLES) or
Grissom & Kim's Probability of Superiority (PS), and the Number
needed to treat (NNT) effect size. Moreover, comparisons to
Cohen's d are offered based on Huberty & Lowman's Percentage of
Group (Non-)Overlap considerations.
Author: Jens J. Rogmann, University of Hamburg, Department of
Psychology, Germany
Maintainer: Jens J. Rogmann
DESCRIPTION | 23 +++++++++++++----------
MD5 | 10 +++++-----
NEWS | 3 +++
R/dmes.R | 5 +++--
R/orddom.R | 10 +++++-----
man/orddom-package.Rd | 14 ++++++++++----
6 files changed, 39 insertions(+), 26 deletions(-)
Title: Genetic algorithms and C-steps based LTS (Least Trimmed Squares)
estimation
Diff between galts versions 1.2 dated 2012-01-07 and 1.3 dated 2013-02-07
Description: This package includes the ga.lts function that estimates
LTS (Least Trimmed Squares) parameters using genetic algorithms
and C-steps. ga.lts() constructs a genetic algorithm to form a
basic subset and iterates C-steps as defined in Rousseeuw and
van-Driessen (2006) to calculate the cost value of the LTS
criterion. OLS(Ordinary Least Squares) regression is known to
be sensitive to outliers. A single outlying observation can
change the values of estimated parameters. LTS is a resistant
estimator even the number of outliers is up to half of the
data. This package is for estimating the LTS parameters with
lower bias and variance in a reasonable time. Version 1.3
included the function medmad for fast outlier detection in
linear regression.
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman
DESCRIPTION | 12 +++++++-----
MD5 | 5 ++++-
R/medmad.r |only
man/medmad.Rd |only
man/medmad.cov.Rd |only
5 files changed, 11 insertions(+), 6 deletions(-)
Title: R interface to the iPlant Discovery Environment
Diff between rPlant versions 1.2 dated 2012-10-02 and 2.1 dated 2013-02-07
Description: An R interface to the iPlant DE (and, in the future, other
phyloinformatics web apps, like the CIPRES Science Gateway)
Author: Barb Banbury
Maintainer: Barb Banbury
DESCRIPTION | 14
MD5 | 20 -
NAMESPACE | 2
R/RunMuscle.R | 2
R/RunRAxMLdna.R | 23 +
R/RunRAxMLprotein.R | 2
R/TNRS.R | 13
R/rPlant.R | 718 +++++++++++++++++++++++++++------------------------
data/ex.lp.fasta.rda |binary
man/RunMuscle.Rd | 2
man/RunRAxMLdna.Rd | 6
11 files changed, 439 insertions(+), 363 deletions(-)
Title: DBI/RJDBC interface to h2 Database
Diff between RH2 versions 0.1-2.9 dated 2012-12-18 and 0.1-2.10 dated 2013-02-07
Description: DBI/RJDBC interface to h2 database. h2 version 1.3.170 is
included.
Author: G. Grothendieck. Author of h2 is Thomas Mueller.
Maintainer: G. Grothendieck
DESCRIPTION | 8 ++++----
MD5 | 12 +++++++-----
NAMESPACE | 1 +
NEWS | 4 ++++
R/class.R | 5 +++++
R/dot.R |only
inst/NOTE |only
man/H2Connection-methods.Rd | 1 +
8 files changed, 22 insertions(+), 9 deletions(-)
Title: Fitting nonlinear models with scale mixture of skew-normal
distributions.
Diff between nlsmsn versions 0.0-3 dated 2012-04-17 and 0.0-4 dated 2013-02-07
Description: Fit univariate non-linear scale mixture of
skew-normal(NL-SMSN) regression.
Author: Aldo Garay
Maintainer: Marcos Prates
ChangeLog | 4 +
DESCRIPTION | 6 +-
MD5 | 8 +--
R/Utilitarios.R | 9 ++-
R/nlsmsnh.R | 127 ++++++++++++++++++++++++++++++--------------------------
5 files changed, 85 insertions(+), 69 deletions(-)
Title: Citations for knitr markdown files
Diff between knitcitations versions 0.3-2 dated 2013-02-04 and 0.3-3 dated 2013-02-07
Description: While traditional Sweave documents can take advantage of
LaTeX citation tools, knitr also allows users to combine the
much simpler markdown with R code. This package offers
citation tools to make up for this. This package will also
take advantage of the web-based nature of markdown documents to
allow dynamic citations pulled from the web.
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger
knitcitations-0.3-2/knitcitations/R/cleanbib.R |only
knitcitations-0.3-3/knitcitations/DESCRIPTION | 12 +++---
knitcitations-0.3-3/knitcitations/MD5 | 12 +++---
knitcitations-0.3-3/knitcitations/NEWS | 6 +++
knitcitations-0.3-3/knitcitations/R/bibliography.R | 32 ++++++++++++++--
knitcitations-0.3-3/knitcitations/R/newbib.R | 12 ++++++
knitcitations-0.3-3/knitcitations/man/cleanbib.Rd | 17 ++++++--
knitcitations-0.3-3/knitcitations/man/print_markdown.Rd |only
8 files changed, 70 insertions(+), 21 deletions(-)
Title: Functions for medical statistics book with some demographic data
Diff between fmsb versions 0.3.6 dated 2013-01-08 and 0.3.7 dated 2013-02-07
Description: Several utility functions for the book entitled "Practices
of Medical and Health Data Analysis using R" (Pearson Education
Japan, 2007) with Japanese demographic data and some
demographic analysis related functions.
Author: Minato Nakazawa
Maintainer: Minato Nakazawa
DESCRIPTION | 8 +--
MD5 | 13 +++--
NAMESPACE | 5 +
NEWS | 7 ++
R/fmsb.R | 129 +++++++++++++++++++++++++++++++++++++++++++++-----
man/radarchart.Rd | 5 +
man/ratedifference.Rd |only
man/rateratio.Rd |only
man/riskdifference.Rd |only
9 files changed, 142 insertions(+), 25 deletions(-)