More information about RcmdrPlugin.SCDA at CRAN
Permanent link
Title: Computing Continuous Distributions
Diff between Compounding versions 1.0.1 dated 2012-10-22 and 1.0.2 dated 2013-02-09
Description: Computing Continuous Distributions Obtained by Compounding
a Continuous and a Discrete Distribution
Author: Bozidar V. Popovic, Saralees Nadarajah, Miroslav M. Ristic
Maintainer: Bozidar V. Popovic
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
R/dCompound.R | 2 +-
R/pCompound.R | 2 +-
R/qCompound.R | 4 ++--
5 files changed, 11 insertions(+), 11 deletions(-)
Title: Utilities for Sweave together with TeX listings package
Diff between SweaveListingUtils versions 0.6 dated 2013-02-07 and 0.6.1 dated 2013-02-09
More information about SweaveListingUtils at CRAN
Description: provides utilities for defining R / Rd as
Tex-package-listings "language" and including R / Rd source
file (sniplets) copied from R-forge in its most recent version
(or another url) thereby avoiding inconsistencies between
vignette and documented source code
Author: Peter Ruckdeschel
Maintainer: Peter Ruckdeschel
DESCRIPTION | 16
MD5 | 10
R/SweaveListingUtils.R | 7
inst/doc/ExampleSweaveListingUtils.pdf |binary
man/0SweaveListingUtils-package.Rd | 8
tests/Examples/SweaveListingUtils-Ex.Rout.save | 6698 ++++++++++++-------------
6 files changed, 3342 insertions(+), 3397 deletions(-)
Permanent link
Title: SAGA Geoprocessing and Terrain Analysis in R
Diff between RSAGA versions 0.93-1 dated 2011-12-30 and 0.93-2 dated 2013-02-09
Description: RSAGA provides access to geocomputing and terrain analysis
functions of SAGA from within R by running the command line
version of SAGA. RSAGA furthermore provides several R functions
for handling ASCII grids, including a flexible framework for
applying local functions (including predict methods of fitted
models) and focal functions to multiple grids. SAGA GIS is
available under GPLv2 / LGPLv2 licence from
http://sourceforge.net/projects/saga-gis/.
Author: Alexander Brenning
Maintainer: Alexander Brenning
DESCRIPTION | 18 +++++++++++++-----
MD5 | 21 +++++++++++----------
NAMESPACE | 11 -----------
R/RSAGA-modules.R | 10 ++++++----
R/gridtools.R | 33 +++++++++++++++++++++------------
inst |only
man/centervalue.Rd | 5 +++--
man/focal.function.Rd | 5 ++++-
man/multi.focal.function.Rd | 9 ++++++---
man/read.ascii.grid.Rd | 25 +++++++++++++++++--------
man/rsaga.parallel.processing.Rd | 13 ++++++++++---
man/rsaga.pisr.Rd | 7 ++++++-
12 files changed, 97 insertions(+), 60 deletions(-)
Title: R tools for processing Level 2 Cloud Mask products from MODIS
Diff between modiscloud versions 0.13 dated 2013-01-31 and 0.14 dated 2013-02-09
Description: Package for processing downloaded MODIS Cloud Product HDF
files and derived files. Specifically, MOD35_L2 cloud product
files, and the associated MOD03 geolocation files (for
MODIS-TERRA); and MYD35_L2 cloud product files, and the
associated MYD03 geolocation files (for MODIS-AQUA). The
package will be most effective if the user installs MRTSwath
(MODIS Reprojection Tool for swath products;
https://lpdaac.usgs.gov/tools/modis_reprojection_tool_swath),
and adds the directory with the MRTSwath executable to the
default R PATH by editing ~/.Rprofile.
Author: Nicholas J. Matzke, Dept. of Integrative Biology, U.C. Berkeley
Maintainer: Nicholas J. Matzke
DESCRIPTION | 14 ++++++++------
MD5 | 38 +++++++++++++++++++-------------------
R/modiscloud-package.R | 12 ++++++------
R/modiscloud.R | 13 +++++++++++++
inst/CITATION | 15 ++++-----------
inst/REFERENCES.bib | 8 --------
man/byteint2bit.Rd | 2 ++
man/byteint2bit_list.Rd | 2 ++
man/dates_from_fileslist.Rd | 2 ++
man/extract_bit.Rd | 2 ++
man/get_bitgrid.Rd | 2 ++
man/get_bitgrid_2bits.Rd | 2 ++
man/get_date_from_POSIXct.Rd | 2 ++
man/get_dates_from_POSIXct.Rd | 2 ++
man/make_POSIXct_date.Rd | 2 ++
man/make_cloudcount_product.Rd | 2 ++
man/modiscloud-package.Rd | 13 +++++--------
man/numslist_to_grd.Rd | 2 ++
man/sum_bitgrid.Rd | 2 ++
man/yearmonthday_to_julianday.Rd | 2 ++
20 files changed, 81 insertions(+), 58 deletions(-)
Title: General Frailty models using a semiparametric penalized
likelihood estimation or a parametric estimation
Diff between frailtypack versions 2.2-27 dated 2012-11-27 and 2.3 dated 2013-02-09
Description: Frailtypack now fits several classes of frailty models
using a penalized likelihood estimation on the hazard function
but also a parametric estimation. 1) A shared frailty model
(with gamma or log-normal frailty distribution) and Cox
proportional hazard model. Clustered and recurrent survival
times can be studied (the Andersen-Gill(1982) approach has been
implemented for recurrent events). An automatic choice of the
smoothing parameter is possible using an approximated
cross-validation procedure. 2) Additive frailty models for
proportional hazard models with two correlated random effects
(intercept random effect with random slope). 3) Nested frailty
models for hierarchically clustered data (with 2 levels of
clustering) by including two iid gamma random effects. 4) Joint
frailty models in the context of joint modelling for recurrent
events with terminal event for clustered data or not.
Prediction values are available. Left truncated (not for Joint
model), right-censored data, interval-censored data (only for
Cox proportional hazard and shared frailty model) and strata
(max=2) are allowed. In each model, the random effects have a
gamma distribution, but you can switch to a log-normal in
shared and joint models. The package includes concordance
measures for Cox proportional hazards models and for shared
frailty models.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey
Mauguen, Amadou Diakite and Alexandre Laurent
Maintainer: Virginie Rondeau
frailtypack-2.2-27/frailtypack/data/diabetes.rda |only
frailtypack-2.2-27/frailtypack/man/diabetes.Rd |only
frailtypack-2.3/frailtypack/DESCRIPTION | 52
frailtypack-2.3/frailtypack/MD5 | 145 +-
frailtypack-2.3/frailtypack/NEWS | 31
frailtypack-2.3/frailtypack/R/SurvIC.R | 30
frailtypack-2.3/frailtypack/R/additivePenal.R | 2
frailtypack-2.3/frailtypack/R/cluster.R |only
frailtypack-2.3/frailtypack/R/frailtyPenal.R | 493 +++++---
frailtypack-2.3/frailtypack/R/plot.frailtyPenal.R | 59
frailtypack-2.3/frailtypack/R/plot.jointPenal.R | 58
frailtypack-2.3/frailtypack/R/print.additivePenal.R | 4
frailtypack-2.3/frailtypack/R/print.frailtyPenal.R | 111 +
frailtypack-2.3/frailtypack/R/print.jointPenal.R | 114 +
frailtypack-2.3/frailtypack/R/print.nestedPenal.R | 4
frailtypack-2.3/frailtypack/R/waldtest.R | 6
frailtypack-2.3/frailtypack/data/bcos.rda |only
frailtypack-2.3/frailtypack/demo/frailtypack_jointPenal.R | 4
frailtypack-2.3/frailtypack/man/Cmeasures.Rd | 12
frailtypack-2.3/frailtypack/man/JointfrailtyPenal.Rd | 103 -
frailtypack-2.3/frailtypack/man/NestedfrailtyPenal.Rd | 45
frailtypack-2.3/frailtypack/man/SurvIC.Rd | 36
frailtypack-2.3/frailtypack/man/additivePenal.Rd | 28
frailtypack-2.3/frailtypack/man/bcos.Rd |only
frailtypack-2.3/frailtypack/man/dataNested.Rd | 5
frailtypack-2.3/frailtypack/man/frailtyPenal.Rd | 87 -
frailtypack-2.3/frailtypack/man/frailtypack-package.Rd | 65 -
frailtypack-2.3/frailtypack/man/hazard.Rd | 13
frailtypack-2.3/frailtypack/man/num.id.Rd | 14
frailtypack-2.3/frailtypack/man/plotAdditive.Rd | 17
frailtypack-2.3/frailtypack/man/plotFrailtyPenal.Rd | 20
frailtypack-2.3/frailtypack/man/plotJointPenal.Rd | 35
frailtypack-2.3/frailtypack/man/plotNestedPenal.Rd | 11
frailtypack-2.3/frailtypack/man/print.Cmeasures.Rd | 13
frailtypack-2.3/frailtypack/man/printAdditive.Rd | 18
frailtypack-2.3/frailtypack/man/printFrailtyPenal.Rd | 24
frailtypack-2.3/frailtypack/man/printJointPenal.Rd | 20
frailtypack-2.3/frailtypack/man/printNestedPenal.Rd | 16
frailtypack-2.3/frailtypack/man/readmission.Rd | 2
frailtypack-2.3/frailtypack/man/slope.Rd | 25
frailtypack-2.3/frailtypack/man/subcluster.Rd | 13
frailtypack-2.3/frailtypack/man/summaryAdditive.Rd | 11
frailtypack-2.3/frailtypack/man/summaryFrailtyPenal.Rd | 21
frailtypack-2.3/frailtypack/man/summaryJointPenal.Rd | 33
frailtypack-2.3/frailtypack/man/summaryNestedPenal.Rd | 20
frailtypack-2.3/frailtypack/man/survival.Rd | 13
frailtypack-2.3/frailtypack/man/terminal.Rd | 37
frailtypack-2.3/frailtypack/src/Adonnees.f90 | 44
frailtypack-2.3/frailtypack/src/Aparameters.f90 | 21
frailtypack-2.3/frailtypack/src/aaOptim.f90 | 30
frailtypack-2.3/frailtypack/src/additive.f90 | 12
frailtypack-2.3/frailtypack/src/afuncpasres.f90 | 61
frailtypack-2.3/frailtypack/src/aresidusMartingale.f90 | 54
frailtypack-2.3/frailtypack/src/distance.f90 | 736 +++++++-----
frailtypack-2.3/frailtypack/src/frailtypack.f90 | 277 +++-
frailtypack-2.3/frailtypack/src/funcpaGcpm.f90 | 8
frailtypack-2.3/frailtypack/src/funcpaGcpm_intcens.f90 |only
frailtypack-2.3/frailtypack/src/funcpaGcpm_log.f90 |only
frailtypack-2.3/frailtypack/src/funcpaGsplines.f90 | 28
frailtypack-2.3/frailtypack/src/funcpaGsplines_intcens.f90 |only
frailtypack-2.3/frailtypack/src/funcpaGsplines_log.f90 |only
frailtypack-2.3/frailtypack/src/funcpaGweib.f90 | 36
frailtypack-2.3/frailtypack/src/funcpaGweib_intcens.f90 |only
frailtypack-2.3/frailtypack/src/funcpaGweib_log.f90 |only
frailtypack-2.3/frailtypack/src/funcpajcpm.f90 | 99 -
frailtypack-2.3/frailtypack/src/funcpajcpm_log.f90 |only
frailtypack-2.3/frailtypack/src/funcpajsplines.f90 | 150 --
frailtypack-2.3/frailtypack/src/funcpajsplines_intcens.f90 |only
frailtypack-2.3/frailtypack/src/funcpajsplines_log.f90 |only
frailtypack-2.3/frailtypack/src/funcpajweib.f90 | 95 -
frailtypack-2.3/frailtypack/src/funcpajweib_intcens.f90 |only
frailtypack-2.3/frailtypack/src/funcpajweib_log.f90 |only
frailtypack-2.3/frailtypack/src/funcpanweib.f90 | 90 -
frailtypack-2.3/frailtypack/src/funcpascpm.f90 | 181 +-
frailtypack-2.3/frailtypack/src/funcpascpm_log.f90 |only
frailtypack-2.3/frailtypack/src/funcpassplines.f90 | 314 +----
frailtypack-2.3/frailtypack/src/funcpassplines_intcens.f90 | 4
frailtypack-2.3/frailtypack/src/funcpassplines_log.f90 |only
frailtypack-2.3/frailtypack/src/funcpasweib.f90 | 8
frailtypack-2.3/frailtypack/src/funcpasweib_intcens.f90 | 13
frailtypack-2.3/frailtypack/src/funcpasweib_log.f90 |only
frailtypack-2.3/frailtypack/src/joint.f90 | 797 ++++++++-----
frailtypack-2.3/frailtypack/src/nested.f90 | 12
83 files changed, 2865 insertions(+), 2075 deletions(-)
Title: Entropy reweighting to create balanced samples
Diff between ebal versions 0.1-2 dated 2011-12-27 and 0.1-3 dated 2013-02-09
Description: Package implements entropy balancing, a data preprocessing
procedure that allows users to reweight a dataset such that the
covariate distributions in the reweighted data satisfy a set of
user specified moment conditions. This can be useful to create
balanced samples in observational studies with a binary
treatment where the control group data can be reweighted to
match the covariate moments in the treatment group. Entropy
balancing can also be used to reweight a survey sample to known
characteristics from a target population. This package is
currently in alpha phase (feedback is appreciated).
Author: Jens Hainmueller
Maintainer: Jens Hainmueller
DESCRIPTION | 19 ++++++++++++++-----
MD5 | 4 ++--
R/ebalance.R | 2 +-
3 files changed, 17 insertions(+), 8 deletions(-)
Title: Tools to make developing R code easier
Diff between devtools versions 1.0 dated 2013-01-22 and 1.1 dated 2013-02-09
Description: Collection of package development tools
Author: Hadley Wickham [aut, cre], Winston Chang [aut], R Core team
[ctb] (Namespace related code extracted out of base R)
Maintainer: Hadley Wickham
devtools-1.0/devtools/inst/tests/check-extrafile |only
devtools-1.0/devtools/inst/tests/collate-absent |only
devtools-1.0/devtools/inst/tests/collate-extra |only
devtools-1.0/devtools/inst/tests/collate-missing |only
devtools-1.0/devtools/inst/tests/depends |only
devtools-1.0/devtools/inst/tests/dll-load |only
devtools-1.0/devtools/inst/tests/dll-rcpp |only
devtools-1.0/devtools/inst/tests/import-missing |only
devtools-1.0/devtools/inst/tests/import-version |only
devtools-1.0/devtools/inst/tests/invalid-description |only
devtools-1.0/devtools/inst/tests/load-hooks |only
devtools-1.0/devtools/inst/tests/namespace |only
devtools-1.0/devtools/inst/tests/s4union |only
devtools-1.0/devtools/inst/tests/shim |only
devtools-1.0/devtools/inst/tests/vignettes |only
devtools-1.1/devtools/DESCRIPTION | 6
devtools-1.1/devtools/MD5 | 174 +++++++---------
devtools-1.1/devtools/NAMESPACE | 1
devtools-1.1/devtools/NEWS | 15 +
devtools-1.1/devtools/R/document.r | 10
devtools-1.1/devtools/R/install.r | 2
devtools-1.1/devtools/R/metadata.r | 9
devtools-1.1/devtools/R/namespace-env.r | 2
devtools-1.1/devtools/R/parent-envs.r | 3
devtools-1.1/devtools/R/rtools.r | 15 +
devtools-1.1/devtools/R/run-source.r | 11 -
devtools-1.1/devtools/R/system.r | 36 +--
devtools-1.1/devtools/R/test.r | 2
devtools-1.1/devtools/R/with.r | 12 -
devtools-1.1/devtools/inst/tests/test-checks.r | 4
devtools-1.1/devtools/inst/tests/test-depend.r | 14 -
devtools-1.1/devtools/inst/tests/test-description.r | 8
devtools-1.1/devtools/inst/tests/test-dll.r | 50 ++--
devtools-1.1/devtools/inst/tests/test-imports.r | 6
devtools-1.1/devtools/inst/tests/test-load-collate.r | 12 -
devtools-1.1/devtools/inst/tests/test-load-hooks.r | 40 +--
devtools-1.1/devtools/inst/tests/test-metadata.r | 54 ++--
devtools-1.1/devtools/inst/tests/test-namespace.r | 86 +++----
devtools-1.1/devtools/inst/tests/test-s4-unload.r | 22 +-
devtools-1.1/devtools/inst/tests/test-shim.r | 40 +--
devtools-1.1/devtools/inst/tests/test-vignettes.r | 8
devtools-1.1/devtools/inst/tests/test-with.r | 6
devtools-1.1/devtools/inst/tests/testCheckExtrafile |only
devtools-1.1/devtools/inst/tests/testCollateAbsent |only
devtools-1.1/devtools/inst/tests/testCollateExtra |only
devtools-1.1/devtools/inst/tests/testCollateMissing |only
devtools-1.1/devtools/inst/tests/testDependMissing |only
devtools-1.1/devtools/inst/tests/testDllLoad |only
devtools-1.1/devtools/inst/tests/testDllRcpp |only
devtools-1.1/devtools/inst/tests/testImportMissing |only
devtools-1.1/devtools/inst/tests/testImportVersion |only
devtools-1.1/devtools/inst/tests/testInvalidDescription |only
devtools-1.1/devtools/inst/tests/testLoadHooks |only
devtools-1.1/devtools/inst/tests/testNamespace |only
devtools-1.1/devtools/inst/tests/testS4union |only
devtools-1.1/devtools/inst/tests/testShim |only
devtools-1.1/devtools/inst/tests/testVignettes |only
devtools-1.1/devtools/man/dev_meta.Rd | 9
devtools-1.1/devtools/man/parse_ns_file.Rd | 2
devtools-1.1/devtools/man/source_gist.Rd | 1
devtools-1.1/devtools/man/with_something.Rd | 7
61 files changed, 355 insertions(+), 312 deletions(-)
Title: Density Estimation for Binned/Weighted Data
Diff between bda versions 2.0.12-17 dated 2012-12-17 and 2.1.2-8 dated 2013-02-09
Description: This package collects algorithms/functions developed for
density estimation based on weighted or pre-binned data.
Author: Bin Wang
Maintainer: Bin Wang
bda-2.0.12-17/bda/R/bkde.R |only
bda-2.1.2-8/bda/DESCRIPTION | 8 +++---
bda-2.1.2-8/bda/MD5 | 10 ++++---
bda-2.1.2-8/bda/R/binDE.R |only
bda-2.1.2-8/bda/R/bootKDE.R |only
bda-2.1.2-8/bda/man/bdde.Rd |only
bda-2.1.2-8/bda/src/KernelWKDE.c | 50 +++++++++++++++++++++++++++++++++++++++
bda-2.1.2-8/bda/src/init.c | 3 ++
8 files changed, 63 insertions(+), 8 deletions(-)