Sun, 19 May 2013

Package pom updated to version 1.1 with previous version 1.0 dated 2013-05-19

Title: POM - Patch Occupancy Models
Description: This package fits a patch occupancy model
Author: Fawn Hornsby, Ryan Nielson, and Trent McDonald (www.west-inc.com)
Maintainer: Fawn Hornsby

Diff between pom versions 1.0 dated 2013-05-19 and 1.1 dated 2013-05-19

 DESCRIPTION    |    8 ++++----
 MD5            |    4 ++--
 R/PO_Code_FH.r |    4 ++--
 3 files changed, 8 insertions(+), 8 deletions(-)

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New package msgpackR with initial version 1.0
Package: msgpackR
Type: Package
Title: A library to serialize or unserialize data in MessagePack format
Version: 1.0
Date: 2013-05-19
Author: Mikiya TANIZAWA
Maintainer: Mikiya TANIZAWA <1970mix@gmail.com>
Description: This is the library that can serialize or unserialize MessagePack format data.
License: BSD
Packaged: 2013-05-19 14:42:23 UTC; mikiya
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-19 18:49:09

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Package lessR updated to version 2.9.3 with previous version 2.9.2 dated 2013-05-08

Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate descriptive statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, ANOVA and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, the reading and display of csv and other formatted data and color themes. The function Help provides a help system that suggests specific analyses and functions. Variable labels are available. A confirmatory factor analysis of multiple indicator measurement models is also available as well as pedagogical routines for data simulation such as for the Central Limit Theorem.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing

Diff between lessR versions 2.9.2 dated 2013-05-08 and 2.9.3 dated 2013-05-19

 DESCRIPTION        |   11 +++----
 MD5                |   30 ++++++++++----------
 NAMESPACE          |    3 --
 NEWS               |   44 ++++++++++++++++++++++++++++++
 R/LineChart.R      |    2 -
 R/Read.R           |   40 ++++++---------------------
 R/bc.zmain.R       |   23 +++++++++++++---
 R/details.R        |   13 +++------
 R/lc.zmain.R       |    9 +++++-
 R/simCLT.R         |   76 ++++++++++++++++++++++++++++-------------------------
 R/zzz.R            |    8 ++---
 man/Correlation.Rd |    2 -
 man/LineChart.Rd   |    5 ++-
 man/Read.Rd        |   32 ++++++----------------
 man/Regression.Rd  |   11 ++++++-
 man/simCLT.Rd      |    2 -
 16 files changed, 177 insertions(+), 134 deletions(-)

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Package pnmtrem updated to version 1.3 with previous version 1.2 dated 2013-02-03

Title: Probit-Normal Marginalized Transition Random Effects Models
Description: An R package for Probit-Normal Marginalized Transition Random Effects Models
Author: Ozgur Asar, Ozlem Ilk
Maintainer: Ozgur Asar

Diff between pnmtrem versions 1.2 dated 2013-02-03 and 1.3 dated 2013-05-19

 DESCRIPTION     |   11 ++++++-----
 MD5             |    6 +++---
 man/pnmtrem.Rd  |   13 +++----------
 man/pnmtrem1.Rd |    4 ++--
 4 files changed, 14 insertions(+), 20 deletions(-)

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Package oce updated to version 0.9-10 with previous version 0.9-8 dated 2013-04-25

Title: Analysis of Oceanographic data
Description: Supports the analysis of Oceanographic data, including ADP measurements, CTD measurements, sectional data, sea-level time series, coastline files, etc. Provides functions for calculating seawater properties such as potential temperature and density, as well as derived properties such as buoyancy frequency and dynamic height.
Author: Dan Kelley
Maintainer: Dan Kelley

Diff between oce versions 0.9-8 dated 2013-04-25 and 0.9-10 dated 2013-05-19

 DESCRIPTION               |    8 ++++----
 MD5                       |   34 +++++++++++++++++-----------------
 NEWS                      |    8 ++++++++
 R/ctd.R                   |   15 ++++++++-------
 R/map.R                   |    4 ++--
 inst/doc/oce.pdf          |binary
 man/as.tdr.Rd             |    4 ++--
 man/binmapAdp.Rd          |    2 +-
 man/ctdDecimate.Rd        |    2 +-
 man/drawDirectionField.Rd |    6 ++++--
 man/drawPalette.Rd        |    8 ++++----
 man/levitus.Rd            |    4 ++--
 man/makeFilter.Rd         |   12 +++++++-----
 man/plotInset.Rd          |    3 ++-
 man/plotTS.Rd             |    4 +++-
 man/read.cm.Rd            |    2 +-
 man/resizableLabel.Rd     |    4 ++--
 man/swRho.Rd              |    3 ++-
 18 files changed, 70 insertions(+), 53 deletions(-)

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New package TCC with initial version 1.1.3
Package: TCC
Type: Package
Title: TCC: Differential expression analysis for tag count data with robust normalization strategies
Version: 1.1.3
Author: Sun Jianqiang, Tomoaki Nishiyama, Kentaro Shimizu, and Koji Kadota
Maintainer: Tomoaki Nishiyama
Description: This package provides functions for performing differential expression analysis using differentially expressed gene elimination strategy. A simple unified interface is provided which encapsulates functions to calculate normalization factors and estimate differentially expressed genes defined in edgeR, baySeq, and DESeq packages. The appropriate combination provided by TCC allows a more robust and accurate estimation performed easily than directly using original packages. Functions to produce simulation data under various conditions and to plot the data are also provided.
Depends: R (>= 2.15), methods, Biobase(>= 2.13.11), locfit
Imports: ROC, edgeR, baySeq, DESeq
License: GPL-2
Copyright: Authors listed above
URL: http://www.iu.a.u-tokyo.ac.jp/~kadota/TCC
Packaged: 2013-05-19 06:13:44 UTC; tomoaki
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-19 09:12:46

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New package probsvm with initial version 1.00
Package: probsvm
Type: Package
Title: probsvm: Class probability estimation for Support Vector Machines
Date: 2013-5-16
Version: 1.00
Author: Chong Zhang, Seung Jun Shin, Junhui Wang, Yichao Wu, Hao Helen Zhang, and Yufeng Liu
Maintainer: Chong Zhang
Depends: kernlab
Description: This package provides multiclass conditional probability estimation for the SVM, which is distributional assumption free.
License: GPL-2
LazyLoad: yes
Packaged: 2013-05-18 23:48:46 UTC; NC
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-19 08:15:01

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New package pom with initial version 1.0
Package: pom
Type: Package
Title: POM - Patch Occupancy Models
Version: 1.0
Date: 2012-11-16
Author: Fawn Hornsby, Ryan Nielson, and Trent McDonald (www.west-inc.com)
Maintainer: Fawn Hornsby
Depends: matrixcalc
Description: This package fits a patch occupancy model
License: GNU General Public License
Packaged: 2013-05-18 20:11:05 UTC; fhornsby
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-19 08:14:59

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Package FNN updated to version 1.0 with previous version 0.6-4 dated 2012-10-17

Title: Fast Nearest Neighbor Search Algorithms and Applications
Description: A collection of fast k-nearest neighbor search algorithms and applications including a cover-tree, kd-tree and the nearest neighbor algorithm in package class. In addition, KNN classification, regression and information measures are also implemented.
Author: Shengqiao Li
Maintainer: Shengqiao Li

Diff between FNN versions 0.6-4 dated 2012-10-17 and 1.0 dated 2013-05-19

 FNN-0.6-4/FNN/inst                       |only
 FNN-1.0/FNN/ChangeLog                    |    6 +
 FNN-1.0/FNN/DESCRIPTION                  |    9 +
 FNN-1.0/FNN/MD5                          |   22 +---
 FNN-1.0/FNN/R/KNN.R                      |   21 +++-
 FNN-1.0/FNN/R/KNN.information.measures.R |    5 -
 FNN-1.0/FNN/man/knn.Rd                   |  126 +++++++++++++--------------
 FNN-1.0/FNN/man/knn.cv.Rd                |  122 +++++++++++++-------------
 FNN-1.0/FNN/man/ownn.rd                  |   91 +++++++++----------
 FNN-1.0/FNN/src/KNN_VR.cpp               |  143 +++++++++++++++----------------
 10 files changed, 279 insertions(+), 266 deletions(-)

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Package discrimARTs updated to version 0.2 with previous version 0.1 dated 2013-04-18

Title: Discrimination of Alternative Reproductive Tactics (ARTs).
Description: 'discrimARTs' discriminates with explicit confidence the alternative reproductive tactics (ARTs) in dimorphic systems with bimodal traits by computing the maximum likelihood estimate of a mixture of distributions of a measured ARTs trait. Supported distributions include a mixture of 2 normal distributions and a mixture of 2 facing gamma distributions.
Author: J. Mark Rowland, Clifford Qualls, and Christian Gunning
Maintainer: Clifford Qualls,

Diff between discrimARTs versions 0.1 dated 2013-04-18 and 0.2 dated 2013-05-19

 DESCRIPTION                |   20 ++--
 MD5                        |   14 +--
 man/discrimARTs-package.Rd |   19 +---
 man/mix.loglik.Rd          |  119 ++++++++++++-------------
 man/mix.mle.Rd             |  209 ++++++++++++++++++++++-----------------------
 man/mix.synthetic.Rd       |  143 +++++++++++++++---------------
 man/o_taurus.Rd            |   61 ++++++++-----
 man/x_gideon.Rd            |   25 ++---
 8 files changed, 314 insertions(+), 296 deletions(-)

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Package dielectric updated to version 0.2.2 with previous version 0.2 dated 2012-03-04

Title: Defines some physical constants and dielectric functions commonly used in optics, plasmonics.
Description: Physical constants. Gold, silver and glass permittivities, together with spline interpolation functions.
Author: Baptiste Auguie [aut, cre] (the original data have their original source listed in the help file.)
Maintainer: Baptiste Auguie

Diff between dielectric versions 0.2 dated 2012-03-04 and 0.2.2 dated 2013-05-19

 dielectric-0.2.2/dielectric/DESCRIPTION            |   17 +++++++++----
 dielectric-0.2.2/dielectric/MD5                    |   27 +++++++++++++--------
 dielectric-0.2.2/dielectric/NAMESPACE              |    2 +
 dielectric-0.2.2/dielectric/NEWS                   |   14 ++--------
 dielectric-0.2.2/dielectric/R/drude.r              |    2 -
 dielectric-0.2.2/dielectric/R/metals.r             |only
 dielectric-0.2.2/dielectric/data/AgPalik.rda       |binary
 dielectric-0.2.2/dielectric/data/AuJC.rda          |binary
 dielectric-0.2.2/dielectric/data/aSi.rda           |only
 dielectric-0.2.2/dielectric/demo/00Index           |    1 
 dielectric-0.2.2/dielectric/demo/AgPalik.r         |    4 +--
 dielectric-0.2.2/dielectric/demo/AuJC.r            |    2 -
 dielectric-0.2.2/dielectric/demo/Si.r              |only
 dielectric-0.2.2/dielectric/inst/rawdata/AuAg.r    |   13 ++++++----
 dielectric-0.2.2/dielectric/inst/rawdata/silicon.r |only
 dielectric-0.2.2/dielectric/man/aSi.Rd             |only
 dielectric-0.2.2/dielectric/man/epsAg.Rd           |only
 dielectric-0.2.2/dielectric/man/epsAu.Rd           |only
 dielectric-0.2/dielectric/.gitignore               |only
 19 files changed, 47 insertions(+), 35 deletions(-)

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