CRANberries

Fri, 24 May 2013

New package msgl with initial version 0.1.1
Package: msgl
Type: Package
Title: High dimensional multiclass classification using sparse group lasso
Version: 0.1.1
Date: 2013-20-05
Author: Martin Vincent (Sparse group lasso), Conrad Sanderson (Armadillo), Jaakko Jarvi (Boost Tuple) and Jens Maurer (Boost Random)
Maintainer: Martin Vincent
Description: Sparse group lasso multiclass classification, suitable for high dimensional problems with many classes (see url). Fast algorithm for solving the multinomial sparse group lasso optimization problem. Use of multiple processors for cross validation and subsampling is supported through OpenMP. The Armadillo C++ library is used as the primary linear algebra engine. Armadillo is licensed under the MPL 2.0 (see url). The Armadillo C++ library is primarily developed at NICTA (Australia) by Conrad Sanderson, with contributions from around the world. Furthermore the package utilize various Boost libraries, in particular the Tuple library by Jaakko Jarvi and the Random library by Jens Maurer. The Boost libraries are licensed under the Boost Software License (see url).
URL: http://arxiv.org/abs/1205.1245 http://arma.sourceforge.net/, http://www.mozilla.org/MPL/2.0/, http://www.boost.org/, http://www.boost.org/users/license.html
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 2.13.0), Matrix
Collate: 'msgl_multinomial.R'
Packaged: 2013-05-24 18:52:34 UTC; martin
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-05-24 21:40:44

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Package bayesPop updated to version 4.0-1 with previous version 3.2-3 dated 2013-04-11

Title: Probabilistic Population Projection
Description: The package allows to generate population projections for all countries of the world using several probabilistic components, such as total fertility rate (TFR) and life expectancy.
Author: Hana Sevcikova, Adrian Raftery
Maintainer: Hana Sevcikova

Diff between bayesPop versions 3.2-3 dated 2013-04-11 and 4.0-1 dated 2013-05-24 

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 bayesPop-4.0-1/bayesPop/ChangeLog                                          |   13 
 bayesPop-4.0-1/bayesPop/DESCRIPTION                                        |   14 
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 bayesPop-4.0-1/bayesPop/R/aggregate.R                                      |   14 
 bayesPop-4.0-1/bayesPop/R/get_outputs.R                                    |   47 +
 bayesPop-4.0-1/bayesPop/R/predict.pop.R                                    |   86 ++-
 bayesPop-4.0-1/bayesPop/data/vwBaseYear2008.txt                            |  236 +++++++++-
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 bayesPop-4.0-1/bayesPop/tests/run_tests.R                                  |    3 
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Package bayesDem updated to version 2.3-0 with previous version 2.2-1 dated 2013-04-07

Title: Graphical User Interface for bayesTFR, bayesLife and bayesPop
Description: Provides Graphical user interface for the packages bayesTFR, bayesLife and bayesPop
Author: Hana Sevcikova
Maintainer: Hana Sevcikova

Diff between bayesDem versions 2.2-1 dated 2013-04-07 and 2.3-0 dated 2013-05-24 

 DESCRIPTION             |   12 +++++----
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 R/tfr-predict.R         |   51 +++++++++++++++++++++++++---------------
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 15 files changed, 130 insertions(+), 109 deletions(-)

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Package contrast updated to version 0.18 with previous version 0.17 dated 2011-12-24

Title: A collection of contrast methods
Description: Contrast methods, in the style of the Design package, for fit objects produced by the lm, glm, gls, and geese functions.
Author: Max Kuhn, contributions from Steve Weston, Jed Wing and James Forester
Maintainer: Max Kuhn

Diff between contrast versions 0.17 dated 2011-12-24 and 0.18 dated 2013-05-24 

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Package arules updated to version 1.0-14 with previous version 1.0-13 dated 2013-04-07

Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules). Also provides interfaces to C implementations of the association mining algorithms Apriori and Eclat by C. Borgelt.
Author: Michael Hahsler, Christian Buchta, Bettina Gruen and Kurt Hornik
Maintainer: Michael Hahsler

Diff between arules versions 1.0-13 dated 2013-04-07 and 1.0-14 dated 2013-05-24 

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New package tlnise with initial version 2.0
Package: tlnise
Depends: R (>= 3.0.0)
Suggests: MASS
Imports: stats
Version: 2.0
Date: 2013-05-24
Title: Two-level normal independent sampling estimation
Author: S-PLUS original by Phil Everson; R port by Roger D. Peng
Maintainer: Roger D. Peng
Description: Functions for two level normal models as described in Everson and Morris (2000). J. R. Statist. Soc. B, 62 prt 2, pp.399--412.
License: GPL-3
URL: http://www.swarthmore.edu/NatSci/peverso1/TLNise/tlnise.htm
Packaged: 2013-05-24 14:37:36 UTC; rdpeng
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-05-24 18:24:21

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Package migest updated to version 1.3 with previous version 1.2 dated 2013-04-23

Title: Useful R code for the Estimation of Migration
Description: The migest package contains a collection of R functions that are useful to estimate migration when there is missing data. Included is the ffs routine to estimate migration flows from stock data, as well as various other functions to indirectly estimate flows where marginal totals are known. Functions are illustrated with dummy data.
Author: Guy J. Abel
Maintainer: Guy J. Abel

Diff between migest versions 1.2 dated 2013-04-23 and 1.3 dated 2013-05-24 

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Package lbiassurv updated to version 1.1 with previous version 1.0 dated 2013-03-11

Title: Length-biased correction to survival curve estimation.
Description: The package offers various length-bias corrections to survival curve estimation.
Author: Pierre-Jerome Bergeron and Vahid Partovi Nia
Maintainer: Vahid Partovi Nia

Diff between lbiassurv versions 1.0 dated 2013-03-11 and 1.1 dated 2013-05-24 

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Package fda updated to version 2.3.6 with previous version 2.3.4 dated 2013-04-21

Title: Functional Data Analysis
Description: These functions were developed to support functional data analysis as described in Ramsay, J. O. and Silverman, B. W. (2005) Functional Data Analysis. New York: Springer. They were ported from earlier versions in Matlab and S-PLUS. An introduction appears in Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009) Functional Data Analysis with R and Matlab (Springer). The package includes data sets and script files working many examples including all but one of the 76 figures in this latter book. As of this release, the R-Project is no longer distributing the Matlab versions of the functional data analysis functions and sample analyses through the CRAN distribution system. This is due to the pressure placed on storage required in the many CRAN sites by the rapidly increasing number of R packages, of which the fda package is one. The three of us involved in this package have agreed to help out this situation by switching to distributing the Matlab functions and analyses through Jim Ramsay's ftp site at McGill University. To obtain these Matlab files, go to this site using an ftp utility: http://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/ There you find a set of .zip files containing the functions and sample analyses, as well as two .txt files giving instructions for installation and some additional information.
Author: J. O. Ramsay , Hadley Wickham , Spencer Graves , Giles Hooker
Maintainer: J. O. Ramsay

Diff between fda versions 2.3.4 dated 2013-04-21 and 2.3.6 dated 2013-05-24 

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New package SparseTSCGM with initial version 1.0
Package: SparseTSCGM
Type: Package
Title: Sparse time series chain graphical models
Version: 1.0
Date: 2013-05-24
Author: Fentaw Abegaz and Ernst Wit
Maintainer: Fentaw Abegaz
Depends: R (>= 3.0.0), glasso, longitudinal, flare, mvtnorm, network
Description: Compute and plot sparse autoregressive coefficient and precision matrices for time series chain graphical models.
License: GPL (>= 3)
LazyLoad: yes
Packaged: 2013-05-24 12:05:56 UTC; P261204
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-05-24 15:38:46

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Package ORCME updated to version 1.2.1 with previous version 1.2 dated 2012-09-18

Title: Order Restricted Clustering for Microarray Experiments
Description: This package provides clustering of genes with similar dose response (or time course) profiles. It implements the method described by Lin et al. (2012).
Author: Adetayo Kasim, Martin Otava, Tobias Verbeke
Maintainer: Martin Otava

Diff between ORCME versions 1.2 dated 2012-09-18 and 1.2.1 dated 2013-05-24 

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New package compositionsGUI with initial version 1.0
Package: compositionsGUI
Type: Package
Title: Graphical User Environment for Compositional Data Analysis
Version: 1.0
Date: 2013-05-14
Author: Jiri Eichler, Karel Hron, Raimon Tolosana-Delgado, Gerald van den Boogaart, Matthias Templ, Peter Filzmoser
Maintainer: Jiri Eichler
Depends: robCompositions, compositions, mvoutlier, robustbase, RGtk2, MASS, nnet, boot
Description: The package provides graphical user interface and teaching tool for compositional data analysis using R. It contains data loading from various sources (external sources, installed R packages), preprocessing (imputation of missing values and rounded zeros), basic summary statistics as well as log-ratio transformations, necessary for a reasonable statistical treatment of compositional data (isometric, centred, additive log-ratio transformations). Further, also statistical methods like outlier detection and principal component analysis, together with the corresponding graphical tools, are provided. Finally, the package contains plotting functions, suitable for compositional data analysis, like ternary and quaternary diagrams, scatterplots of log-ratio transformed data, and diagrams with categorical/continuous covariates.
License: GPL (>= 2)
Packaged: 2013-05-16 20:20:57 UTC; templ
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-24 12:34:41

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Package BSquare updated to version 1.1 with previous version 1.0 dated 2013-05-22

Title: Bayesian Simultaneous Quantile Regression
Description: This package models the quantile process as a function of predictors.
Author: Luke Smith & Brian Reich
Maintainer: Luke Smith

Diff between BSquare versions 1.0 dated 2013-05-22 and 1.1 dated 2013-05-24 

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New package Demerelate with initial version 0.8-0
Package: Demerelate
Version: 0.8-0
Date: 2012-05-24
Title: Functions to calculate relatedness on diploid genetic data
Authors@R: c(person("Philipp","Kraemer",role=c("aut", "cre"),email="Philipp.Kraemer@uni-oldenburg.de"),person("Gabriele","Gerlach",role="aut",email="Gabriele.Gerlach@uni-oldenburg.de"))
Author: Philipp Kraemer and Gabriele Gerlach
Maintainer: Philipp Kraemer
Depends: R (>= 2.15.0), fts, mlogit, sfsmisc
Suggests: MASS
Description: Functions to calculate pairwise relatedness on diploid genetic datasets. Different estimators for relatedness can be combined with information on geographical distances. Information on heterozygosity, allele- and genotype diversity as well as genetic F-statistics are provided for each population.
License: GPL (>= 2)
URL: http://www.r-project.org
BugReports: http://Demerelate.bugtracker.url
Packaged: 2013-05-24 08:10:41 UTC; philipp
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-24 10:29:00

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Package bayesLife updated to version 2.0-0 with previous version 1.1-3 dated 2013-04-06

Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova, Adrian Raftery; original WinBugs code written by Jennifer Chunn
Maintainer: Hana Sevcikova

Diff between bayesLife versions 1.1-3 dated 2013-04-06 and 2.0-0 dated 2013-05-24 

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 bayesLife-2.0-0/bayesLife/ChangeLog                                                       |   18 
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 bayesLife-2.0-0/bayesLife/MD5                                                             | 2320 ++++------
 bayesLife-2.0-0/bayesLife/R/plot_functions.R                                              |   33 
 bayesLife-2.0-0/bayesLife/R/projection_fcns.R                                             |   43 
 bayesLife-2.0-0/bayesLife/R/run_mcmc.R                                                    |    4 
 bayesLife-2.0-0/bayesLife/R/wpp_data.R                                                    |   12 
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More information about bayesLife at CRAN
Permanent link

Package OUwie updated to version 1.34 with previous version 1.33 dated 2013-03-23

Title: Analysis of evolutionary rates in an OU framework
Description: Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.
Author: Jeremy M. Beaulieu , Brian O'Meara
Maintainer: Jeremy Beaulieu

Diff between OUwie versions 1.33 dated 2013-03-23 and 1.34 dated 2013-05-24 

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Permanent link

New package twostageTE with initial version 1.0
Package: twostageTE
Type: Package
Title: Two-Stage Threshold Estimation
Version: 1.0
Date: 2013-03-05
Author: Shawn Mankad, George Michailidis, Moulinath Banerjee
Maintainer: Shawn Mankad
Description: Implements a variety of nonparametric methods for computing one-stage and two-stage confidence intervals, as well as point estimates of threshold values.
License: GPL-2
Depends: isotone
Packaged: 2013-05-23 22:28:03 UTC; smankad
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-24 07:38:34

More information about twostageTE at CRAN
Permanent link

Package bayesTFR updated to version 4.0-0 with previous version 3.0-8 dated 2013-04-06

Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova , Leontine Alkema , Adrian Raftery with code contribution from Bailey Fosdick and Patrick Gerland
Maintainer: Hana Sevcikova

Diff between bayesTFR versions 3.0-8 dated 2013-04-06 and 4.0-0 dated 2013-05-24 

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 bayesTFR-4.0-0/bayesTFR/man/run-mcmc.Rd                                              |   14 
 bayesTFR-4.0-0/bayesTFR/man/run.tfr.mcmc.extra.Rd                                    |    5 
 bayesTFR-4.0-0/bayesTFR/man/run.tfr3.mcmc.Rd                                         |    2 
 bayesTFR-4.0-0/bayesTFR/man/tfr.map.Rd                                               |    4 
 bayesTFR-4.0-0/bayesTFR/man/write.projection.summary.Rd                              |    2 
 bayesTFR-4.0-0/bayesTFR/tests/run_tests.R                                            |    8 
 bayesTFR-4.0-0/bayesTFR/tests/test_functions.R                                       |   10 
 245 files changed, 740 insertions(+), 557 deletions(-)

More information about bayesTFR at CRAN
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