Sun, 26 May 2013

Package BRugs updated to version 0.8-1 with previous version 0.8-0 dated 2012-07-24

Title: R interface to the OpenBUGS MCMC software
Description: Fully-interactive R interface to the OpenBUGS software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.
Author: OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Maintainer: Uwe Ligges

Diff between BRugs versions 0.8-0 dated 2012-07-24 and 0.8-1 dated 2013-05-26

 DESCRIPTION          |    9 +++++----
 MD5                  |   10 +++++-----
 NEWS                 |    5 +++++
 R/samples.stats.R    |    2 +-
 data/ratsdata.RData  |binary
 data/ratsinits.RData |binary
 6 files changed, 16 insertions(+), 10 deletions(-)

More information about BRugs at CRAN
Permanent link

Package OpenRepGrid updated to version 0.1.7 with previous version 0.1.6 dated 2012-04-05

Title: Tools to analyse repertory grid data
Description: Tools to analyse repertory grid data
Author: Mark Heckmann
Maintainer: Mark Heckmann

Diff between OpenRepGrid versions 0.1.6 dated 2012-04-05 and 0.1.7 dated 2013-05-26

 OpenRepGrid-0.1.6/OpenRepGrid/.gitignore                             |only
 OpenRepGrid-0.1.6/OpenRepGrid/man/OpenRepGrid-internal.Rd            |only
 OpenRepGrid-0.1.7/OpenRepGrid/CHANGELOG                              |   20 
 OpenRepGrid-0.1.7/OpenRepGrid/DESCRIPTION                            |   13 
 OpenRepGrid-0.1.7/OpenRepGrid/MD5                                    |  127 -
 OpenRepGrid-0.1.7/OpenRepGrid/NAMESPACE                              |   31 
 OpenRepGrid-0.1.7/OpenRepGrid/NEWS                                   |   11 
 OpenRepGrid-0.1.7/OpenRepGrid/R/calc.r                               | 1099 +++++----
 OpenRepGrid-0.1.7/OpenRepGrid/R/data-openrepgrid.r                   |    1 
 OpenRepGrid-0.1.7/OpenRepGrid/R/dev-functions.r                      |    9 
 OpenRepGrid-0.1.7/OpenRepGrid/R/distance.R                           |only
 OpenRepGrid-0.1.7/OpenRepGrid/R/double-entry.R                       |only
 OpenRepGrid-0.1.7/OpenRepGrid/R/export.r                             |   35 
 OpenRepGrid-0.1.7/OpenRepGrid/R/import.r                             |  274 +-
 OpenRepGrid-0.1.7/OpenRepGrid/R/measures.r                           | 1187 +++-------
 OpenRepGrid-0.1.7/OpenRepGrid/R/openrepgrid.r                        |  209 +
 OpenRepGrid-0.1.7/OpenRepGrid/R/repgrid-basicops.r                   |  542 ++--
 OpenRepGrid-0.1.7/OpenRepGrid/R/repgrid-output.r                     |   17 
 OpenRepGrid-0.1.7/OpenRepGrid/R/settings.r                           |only
 OpenRepGrid-0.1.7/OpenRepGrid/R/utils-import.r                       |    1 
 OpenRepGrid-0.1.7/OpenRepGrid/R/zzz.r                                |   57 
 OpenRepGrid-0.1.7/OpenRepGrid/man/OpenRepGrid-overview.Rd            |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/OpenRepGrid.Rd                     |   21 
 OpenRepGrid-0.1.7/OpenRepGrid/man/alignByIdeal.Rd                    |    8 
 OpenRepGrid-0.1.7/OpenRepGrid/man/alignByLoadings.Rd                 |   62 
 OpenRepGrid-0.1.7/OpenRepGrid/man/bind.Rd                            |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/bindConstructs.Rd                  |   46 
 OpenRepGrid-0.1.7/OpenRepGrid/man/clusterBoot.Rd                     |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/constructCor.Rd                    |   50 
 OpenRepGrid-0.1.7/OpenRepGrid/man/constructD.Rd                      |   29 
 OpenRepGrid-0.1.7/OpenRepGrid/man/constructPca.Rd                    |   40 
 OpenRepGrid-0.1.7/OpenRepGrid/man/constructPcaLoadings.Rd            |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/constructRmsCor.Rd                 |   34 
 OpenRepGrid-0.1.7/OpenRepGrid/man/data-leach2001.Rd                  |    2 
 OpenRepGrid-0.1.7/OpenRepGrid/man/distance.Rd                        |   41 
 OpenRepGrid-0.1.7/OpenRepGrid/man/distanceHartmann.Rd                |  161 -
 OpenRepGrid-0.1.7/OpenRepGrid/man/distanceNormalized.Rd              |  173 -
 OpenRepGrid-0.1.7/OpenRepGrid/man/distanceSlater.Rd                  |   57 
 OpenRepGrid-0.1.7/OpenRepGrid/man/elementCor.Rd                      |   52 
 OpenRepGrid-0.1.7/OpenRepGrid/man/elementRmsCor.Rd                   |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/extract-methods.Rd                 |    5 
 OpenRepGrid-0.1.7/OpenRepGrid/man/getNoOfConstructs.Rd               |    4 
 OpenRepGrid-0.1.7/OpenRepGrid/man/getNoOfElements.Rd                 |    4 
 OpenRepGrid-0.1.7/OpenRepGrid/man/importExcel.Rd                     |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/importExcelInternal.Rd             |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/importGridcor.Rd                   |    3 
 OpenRepGrid-0.1.7/OpenRepGrid/man/importGridstat.Rd                  |    3 
 OpenRepGrid-0.1.7/OpenRepGrid/man/importGridsuite.Rd                 |    3 
 OpenRepGrid-0.1.7/OpenRepGrid/man/importScivesco.Rd                  |    3 
 OpenRepGrid-0.1.7/OpenRepGrid/man/importTxt.Rd                       |    5 
 OpenRepGrid-0.1.7/OpenRepGrid/man/importTxtInternal.Rd               |   12 
 OpenRepGrid-0.1.7/OpenRepGrid/man/indexConflict1.Rd                  |   16 
 OpenRepGrid-0.1.7/OpenRepGrid/man/indexConflict2.Rd                  |   32 
 OpenRepGrid-0.1.7/OpenRepGrid/man/indexConflict3.Rd                  |   68 
 OpenRepGrid-0.1.7/OpenRepGrid/man/indexIntensity.Rd                  |   46 
 OpenRepGrid-0.1.7/OpenRepGrid/man/indexPvaff.Rd                      |   28 
 OpenRepGrid-0.1.7/OpenRepGrid/man/openrepgridSettings.Rd             |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/ops-methods.Rd                     |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.alignByLoadings.Rd           |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.constructCor.Rd              |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.constructD.Rd                |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.constructPca.Rd              |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.distance.Rd                  |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.elementCor.Rd                |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.hdistance.Rd                 |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.indexConflict1.Rd            |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.indexConflict2.Rd            |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.indexConflict3.Rd            |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.indexIntensity.Rd            |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.indexPvaff.Rd                |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.rmsCor.Rd                    |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.ssq.Rd                       |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.statsConstructs.Rd           |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/print.statsElements.Rd             |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/quasiDistributionDistanceSlater.Rd |    2 
 OpenRepGrid-0.1.7/OpenRepGrid/man/settings.Rd                        |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/settingsLoad.Rd                    |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/settingsSave.Rd                    |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/slaterStandardization.Rd           |only
 OpenRepGrid-0.1.7/OpenRepGrid/man/ssq.Rd                             |   52 
 OpenRepGrid-0.1.7/OpenRepGrid/man/stats.Rd                           |   22 
 OpenRepGrid-0.1.7/OpenRepGrid/man/subassign.Rd                       |    3 
 82 files changed, 2488 insertions(+), 2232 deletions(-)

More information about OpenRepGrid at CRAN
Permanent link

Package gamlss updated to version 4.2-5 with previous version 4.2-4 dated 2013-05-23

Title: Generalised Additive Models for Location Scale and Shape.
Description: The library for fitting GAMLSS models.
Author: Mikis Stasinopoulos , Bob Rigby with contributions from Calliope Akantziliotou and Vlasios Voudouris
Maintainer: Mikis Stasinopoulos

Diff between gamlss versions 4.2-4 dated 2013-05-23 and 4.2-5 dated 2013-05-26

 gamlss-4.2-4/gamlss/R/par_plot.R       |only
 gamlss-4.2-5/gamlss/DESCRIPTION        |    8 ++++----
 gamlss-4.2-5/gamlss/MD5                |   21 ++++++++++-----------
 gamlss-4.2-5/gamlss/R/PS.R             |    1 -
 gamlss-4.2-5/gamlss/R/dtop.R           |    3 ---
 gamlss-4.2-5/gamlss/R/lo_new.R         |    3 +--
 gamlss-4.2-5/gamlss/R/pb_19-04-2012.R  |    1 -
 gamlss-4.2-5/gamlss/R/powerpoly.R      |    1 -
 gamlss-4.2-5/gamlss/R/predict.gamlss.R |    1 -
 gamlss-4.2-5/gamlss/R/pvc.R            |    2 +-
 gamlss-4.2-5/gamlss/R/random.R         |    1 -
 gamlss-4.2-5/gamlss/R/rc.R             |    4 ----
 12 files changed, 16 insertions(+), 30 deletions(-)

More information about gamlss at CRAN
Permanent link

New package circlize with initial version 0.0.2
Package: circlize
Type: Package
Title: circos layout in R
Version: 0.0.2
Date: 2013-05-25
Author: Zuguang Gu
Maintainer: Zuguang Gu
Depends: R (>= 2.10.0)
Description: The circlize package implements circos layout (http://circos.ca/) in R. It can do almost everything that circos can do. And due to the natural born feature of drawing statistical graphics in R, this package can provide a more flexible way to visualize information in a circular style.
LazyLoad: yes
URL: https://github.com/jokergoo/circlize
License: GPL (>= 2)
Packaged: 2013-05-26 11:51:16 UTC; IBM
Repository: CRAN
Date/Publication: 2013-05-26 14:46:49
NeedsCompilation: no

More information about circlize at CRAN
Permanent link

New package McSpatial with initial version 2.0
Package: McSpatial
Type: Package
Title: Nonparametric spatial data analysis
Version: 2.0
Date: 2013-5-20
Author: Daniel McMillen
Maintainer: Daniel McMillen
Description: Locally weighted regression, semiparametric and conditionally parametric regression, fourier and cubic spline functions, GMM and linearized spatial logit and probit, k-density functions and counterfactuals, nonparametric quantile regression and conditional density functions, Machado-Mata decomposition for quantile regressions, spatial AR model, repeat sales models, conditionally parametric logit and probit
License: GPL
LazyLoad: yes
Depends: lattice, locfit, maptools, quantreg, RANN, SparseM
Suggests: car, classInt, mlogit, RColorBrewer, spatstat, spdep
Packaged: 2013-05-26 08:34:40 UTC; Dan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-26 11:08:53

More information about McSpatial at CRAN
Permanent link

New package ggROC with initial version 1.0
Package: ggROC
Title: package for roc curve plot with ggplot2
Version: 1.0
Date: 2013-05-24
Author: Honglong Wu
Maintainer: Honglong Wu
Depends: R (>= 2.14.0), ggplot2
Suggests: ggplot2
Description: package for roc curve plot with ggplot2
License: GPL (> 2)
Packaged: 2013-05-26 08:55:34 UTC; user
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-05-26 11:08:59

More information about ggROC at CRAN
Permanent link

Package wq updated to version 0.3-10 with previous version 0.3-9 dated 2013-05-22

Title: Exploring water quality monitoring data
Description: Functions to assist in the processing and exploration of data from monitoring programs for aquatic ecosystems. The name "wq" stands for "water quality" and reflects a focus on time series data for physical and chemical properties of water, as well as the plankton. The package is intended for programs that sample approximately monthly at discrete stations, a feature of many legacy data sets. Although our emphasis is on aquatic ecosystems, most of the functions should be useful for analysis of similar-frequency time series regardless of the subject matter.
Author: Alan D. Jassby and James E. Cloern
Maintainer: Alan Jassby

Diff between wq versions 0.3-9 dated 2013-05-22 and 0.3-10 dated 2013-05-26

 ChangeLog         |    1 +
 DESCRIPTION       |   10 +++++-----
 MD5               |    6 +++---
 man/wq-package.Rd |    6 +++---
 4 files changed, 12 insertions(+), 11 deletions(-)

More information about wq at CRAN
Permanent link

Package RSQLite updated to version 0.11.4 with previous version 0.11.3 dated 2013-04-16

Title: SQLite interface for R
Description: Database Interface R driver for SQLite. This package embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine (version 3.7.17) is included.
Author: David A. James, Seth Falcon, and (for the included SQLite sources) the authors of SQLite
Maintainer: Seth Falcon

Diff between RSQLite versions 0.11.3 dated 2013-04-16 and 0.11.4 dated 2013-05-26

 DESCRIPTION                        |    8 
 MD5                                |   16 
 R/SQLiteSupport.R                  |   18 
 inst/NEWS                          |    7 
 inst/UnitTests/dbGetInfo_test.R    |    2 
 inst/UnitTests/dbWriteTable_test.R |   12 
 src/sqlite/sqlite3.c               | 3170 ++++++++++++++++++++++++++++++++-----
 src/sqlite/sqlite3.h               |  109 +
 src/sqlite/sqlite3ext.h            |   13 
 9 files changed, 2904 insertions(+), 451 deletions(-)

More information about RSQLite at CRAN
Permanent link

Package ALKr updated to version 0.5.3 with previous version 0.5 dated 2013-01-31

Title: Generate Age-Length Keys for fish populations
Description: A collection of functions that implement several algorithms for generating age-length keys for fish populations from incomplete data.
Author: Jose Francisco Loff, Alberto Murta, Laurence Kell
Maintainer: Jose Francisco Loff

Diff between ALKr versions 0.5 dated 2013-01-31 and 0.5.3 dated 2013-05-26

 DESCRIPTION               |   10 +++++----
 MD5                       |   48 ++++++++++++++++++++++++----------------------
 NAMESPACE                 |    2 +
 NEWS                      |   19 +++++++++++++++++-
 R/ALKr.r                  |   42 ++++++++++++++++++++++++++++++++--------
 R/ALKr_methods.r          |only
 R/age_slicing.r           |    3 +-
 R/calc_ALK.r              |    3 +-
 R/calc_invALK.r           |    3 +-
 R/classic_ALK.r           |   23 ++++++++++++++--------
 R/gascuel.r               |   10 +++++----
 R/hoenig.r                |   17 ++++++++++++----
 R/hoenig_heisey.r         |   15 +++++++++-----
 R/hom.r                   |    3 +-
 R/inverse_ALK.r           |   22 +++++++++++++--------
 R/kimura_chikuni.r        |   10 ++++++---
 R/package.r               |    6 +++--
 R/summary.ALKr.r          |    4 ++-
 R/summary_ALKr.r          |   33 ++++++++++++++++++++++++++++++-
 man/ALKr-class.Rd         |only
 man/ALKr.Rd               |    4 ++-
 man/classic_ALK.Rd        |   16 ++++++++++-----
 man/extract-methods.Rd    |only
 man/hoenig.Rd             |   11 ++++++++--
 man/inverse_ALK.Rd        |   33 ++++++++++++++++++++-----------
 man/summary_ALKr-class.Rd |only
 src/Makevars              |    1 
 27 files changed, 243 insertions(+), 95 deletions(-)

More information about ALKr at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.