Title: SBML Integration in Package sybil
Diff between sybilSBML versions 2.0.2 dated 2013-05-28 and 2.0.3 dated 2013-05-30
Description: SBML (Systems Biology Markup Language) integration in
sybil
Author: Gabriel Gelius-Dietrich [aut, cre], Deya Alzoubi [ctb]
Maintainer: Gabriel Gelius-Dietrich
DESCRIPTION | 8 -
MD5 | 14 +--
configure | 207 +++++++++++++++++++++++--------------------------
configure.ac | 2
inst/INSTALL | 10 --
inst/NEWS.Rd | 9 ++
inst/doc/sybilSBML.pdf |binary
src/Makevars.win | 10 --
8 files changed, 128 insertions(+), 132 deletions(-)
Title: A complementary package to the FAOSTAT database and the
Statistical Yearbook of the Food and Agricultural Organization
of the United Nations.
Diff between FAOSTAT versions 1.3 dated 2013-05-06 and 1.4 dated 2013-05-30
Description: The package hosts a list of functions to download,
manipulate, construct and aggregate agricultural statistics
provided by the FAOSTAT database of the Food and Agricultural
Organization of the United Nations.
Author: Michael C. J. Kao
Maintainer: Michael C. J. Kao
DESCRIPTION | 11 ++++++-----
MD5 | 38 +++++++++++++++++++-------------------
R/aggRegion.R | 10 +++++-----
R/fillCountryCode.R | 4 ++--
R/getFAO.R | 8 +++-----
R/getFAOtoSYB.R | 2 +-
R/getWDI.R | 2 +-
R/getWDImetaData.R | 4 ++--
R/getWDItoSYB.R | 4 ++--
R/lsgr.R | 18 +++---------------
data/FAOcountryProfile.RData |binary
data/FAOmetaTable.RData |binary
data/FAOregionProfile.RData |binary
inst/doc/FAOSTAT.pdf |binary
man/aggRegion.Rd | 10 +++++-----
man/getFAO.Rd | 4 ----
man/getFAOtoSYB.Rd | 2 +-
man/getWDI.Rd | 2 +-
man/getWDImetaData.Rd | 4 ++--
man/getWDItoSYB.Rd | 4 ++--
20 files changed, 55 insertions(+), 72 deletions(-)
Title: GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Diff between multgee versions 1.1 dated 2012-11-12 and 1.2 dated 2013-05-30
Description: GEE solver for correlated nominal or ordinal multinomial
responses using a local odds ratios parameterization.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
DESCRIPTION | 9 +-
MD5 | 57 +++++++-------
NAMESPACE | 3
NEWS | 12 ++-
R/LORgee.default.R | 2
R/nomLORgee.R | 172 ++++++++++++++++++++++++--------------------
R/ordLORgee.R | 170 +++++++++++++++++++++++++------------------
R/print.LORgee.R | 12 +--
R/print.summary.LORgee.R | 20 ++---
R/print.waldts.R |only
R/summary.LORgee.R | 2
R/waldts.R |only
data/arthritis.rda |binary
data/housing.rda |binary
inst |only
man/LORgee.control.Rd | 14 +--
man/LORgee.default.Rd | 6 -
man/arthritis.Rd | 6 -
man/fitLORgee.Rd | 4 -
man/housing.Rd | 7 -
man/intrinsic.pars.Rd | 24 +++---
man/ipfp.Rd | 3
man/ipfp.control.Rd | 4 -
man/matrixLOR.Rd | 14 ++-
man/multgee-package.Rd | 36 ++++-----
man/nomLORgee.Rd | 83 +++++++++++----------
man/ordLORgee.Rd | 99 +++++++++++++------------
man/print.LORgee.Rd | 2
man/print.summary.LORgee.Rd | 1
man/print.waldts.Rd |only
man/summary.LORgee.Rd | 25 ++++--
man/waldts.Rd |only
32 files changed, 438 insertions(+), 349 deletions(-)
Title: Diagnostic and prognostic meta analysis (metamisc)
Diff between metamisc versions 0.1.0 dated 2013-05-16 and 0.1.1 dated 2013-05-30
Description: This package provides functions for diagnostic and
prognostic meta-analyses. It estimates univariate, bivariate
and multivariate models, and allows the aggregation of
previously published prediction models with new data.
Author: Thomas Debray
Maintainer: Thomas Debray
DESCRIPTION | 15 +-
MD5 | 12 +-
R/uvmeta.r | 263 ++++++++++++++++++--------------------------
inst/model/uvmeta_fixef.bug | 9 -
inst/model/uvmeta_ranef.bug | 9 -
man/metamisc-package.Rd | 4
man/uvmeta.Rd | 8 -
7 files changed, 139 insertions(+), 181 deletions(-)
Title: GUI Tool for Data Management like SPSS or Stata
Diff between Rz versions 0.7-2 dated 2013-01-25 and 0.9-0 dated 2013-05-30
Description: R is very powerful but it lacks some of the
functionalities found in Stata or SPSS to manage survey data.
The `memisc` package provides these (variable labels, value
labels, definable missing values and so on), but to efficiently
work these functions need a graphical interface to allow the
user to get an overview of the data. This package provides such
a graphical interface, similar in fashion to SPSS's Variable
View and data managing system. It uses the `memisc` package as
its backend. Additionally, `Rz` has a powerful plot assistant
interface based on `ggplot2`.
Author: Masahiro Hayashi
Maintainer: Masahiro Hayashi
Rz-0.7-2/Rz/R/RzActionGroup.R |only
Rz-0.7-2/Rz/R/RzAnalysisEditor.R |only
Rz-0.7-2/Rz/R/RzAnalysisVariableEditor.R |only
Rz-0.7-2/Rz/R/RzAnalysisView.R |only
Rz-0.7-2/Rz/inst/po/R-Rz.pot |only
Rz-0.7-2/Rz/inst/po/R-ja.po |only
Rz-0.9-0/Rz/DESCRIPTION | 28
Rz-0.9-0/Rz/LICENSE | 9
Rz-0.9-0/Rz/MD5 | 79 -
Rz-0.9-0/Rz/NAMESPACE | 1
Rz-0.9-0/Rz/NEWS | 195 ++--
Rz-0.9-0/Rz/R/RzAnalysisStat.R | 409 +++-----
Rz-0.9-0/Rz/R/RzData.R | 27
Rz-0.9-0/Rz/R/RzDataCollection.R | 27
Rz-0.9-0/Rz/R/RzDataHandler.R | 7
Rz-0.9-0/Rz/R/RzDataSetIO.R | 88 -
Rz-0.9-0/Rz/R/RzDataSetIOText.R |only
Rz-0.9-0/Rz/R/RzDataToolBar.R |only
Rz-0.9-0/Rz/R/RzMain.R | 290 ++----
Rz-0.9-0/Rz/R/RzMenu.R | 74 +
Rz-0.9-0/Rz/R/RzPlot.R | 4
Rz-0.9-0/Rz/R/RzPlotTheme.R | 2
Rz-0.9-0/Rz/R/RzPopup.R |only
Rz-0.9-0/Rz/R/RzSettings.R | 109 --
Rz-0.9-0/Rz/R/RzTools.R | 23
Rz-0.9-0/Rz/R/RzVVCore.R |only
Rz-0.9-0/Rz/R/RzVVDescriptives.R |only
Rz-0.9-0/Rz/R/RzVVDuplicateData.R | 6
Rz-0.9-0/Rz/R/RzVVMain.R |only
Rz-0.9-0/Rz/R/RzVVManageData.R |only
Rz-0.9-0/Rz/R/RzVVPlot.R |only
Rz-0.9-0/Rz/R/RzVVSelectCases.R | 24
Rz-0.9-0/Rz/R/RzVarToolBar.R |only
Rz-0.9-0/Rz/R/RzVariableView.R | 960 +-------------------
Rz-0.9-0/Rz/R/crossTable.R | 4
Rz-0.9-0/Rz/R/functions.R | 67 +
Rz-0.9-0/Rz/R/zzz.R | 5
Rz-0.9-0/Rz/README | 11
Rz-0.9-0/Rz/inst/images/oxygen/checkbox.png |only
Rz-0.9-0/Rz/inst/images/oxygen/manage_data.png |only
Rz-0.9-0/Rz/inst/images/oxygen/nocheck.png |only
Rz-0.9-0/Rz/inst/images/oxygen/view-filter.png |only
Rz-0.9-0/Rz/inst/po/ja/LC_MESSAGES/R-Rz.mo |binary
Rz-0.9-0/Rz/inst/themes/Default/gtk-2.0-key/key.txt | 4
Rz-0.9-0/Rz/inst/ui/datatoolbar.ui |only
Rz-0.9-0/Rz/inst/ui/menu.ui | 46
Rz-0.9-0/Rz/inst/ui/popup.ui |only
Rz-0.9-0/Rz/inst/ui/vartoolbar.ui |only
Rz-0.9-0/Rz/man/rzAddData.Rd | 2
Rz-0.9-0/Rz/man/rzAddItem.Rd |only
Rz-0.9-0/Rz/man/rzReloadData.Rd | 2
Rz-0.9-0/Rz/po |only
52 files changed, 817 insertions(+), 1686 deletions(-)
Title: Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
Diff between MBmca versions 0.0.2 dated 2013-05-28 and 0.0.2-1 dated 2013-05-30
Description: The MBmca package provides data sets and lightweight
utilities for nucleic acid melting curve analysis and
presentation on microbead surfaces.
Author: Stefan Roediger
Maintainer: Stefan Roediger
CHANGELOG | 19 ++-----------------
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
man/DMP.Rd | 2 +-
man/MBmca-package.Rd | 4 ++--
5 files changed, 14 insertions(+), 29 deletions(-)
Title: High dimensional Mixture Graph Models selection
Diff between glassomix versions 1.0 dated 2013-05-13 and 1.1 dated 2013-05-30
Description: The package glassomix provides a general framework for
network recovering through a model-based soft clustering. It
provides functions for parameter estimation via the EM
algorithm for Gaussian graphical mixture models in high
dimensional setting. The main function is ``glasso.mix'' upon
which a model selection is performed. The package estimates the
optimum number of mixture components (K) and the tuning
parameter (lambda) based on the Extended Bayesian Information
Criteria (EBIC) via ``select.gm'' function. The graphical
structural of the K-networks are also plotted through the
function ``gm.plot''
Author: Anani Lotsi and Ernst Wit
Maintainer: Anani Lotsi
glassomix-1.0/glassomix/man/gm.select.Rd |only
glassomix-1.0/glassomix/man/summary.gm.select.Rd |only
glassomix-1.1/glassomix/DESCRIPTION | 33 ++++----
glassomix-1.1/glassomix/MD5 | 16 +--
glassomix-1.1/glassomix/R/glassomix.R | 16 ++-
glassomix-1.1/glassomix/man/glasso.mix.Rd | 90 ++++++++--------------
glassomix-1.1/glassomix/man/glassomix-package.Rd | 48 ++++-------
glassomix-1.1/glassomix/man/gm.plot.Rd | 81 +++++++------------
glassomix-1.1/glassomix/man/select.gm.Rd |only
glassomix-1.1/glassomix/man/summary.glasso.mix.Rd | 75 ++++++------------
glassomix-1.1/glassomix/man/summary.select.gm.Rd |only
11 files changed, 144 insertions(+), 215 deletions(-)
Title: Multivariate Normal and t Distributions
Diff between mvtnorm versions 0.9-9994 dated 2012-12-10 and 0.9-9995 dated 2013-05-30
Description: Computes multivariate normal and t probabilities,
quantiles, random deviates and densities.
Author: Alan Genz, Frank Bretz, Tetsuhisa Miwa, Xuefei Mi, Friedrich
Leisch, Fabian Scheipl, Bjoern Bornkamp, Torsten Hothorn
Maintainer: Torsten Hothorn
DESCRIPTION | 9 +++++----
MD5 | 15 ++++++++-------
NEWS | 7 ++++++-
inst/CHANGES | 7 ++++++-
inst/doc/MVT_Rnews.R |only
inst/doc/MVT_Rnews.pdf |binary
src/mvt.f | 26 ++++++++++++++++++--------
tests/bugfix-tests.R | 14 +++++++++++++-
tests/bugfix-tests.Rout.save | 27 +++++++++++++++++++--------
9 files changed, 75 insertions(+), 30 deletions(-)
Title: Convert country names and country codes
Diff between countrycode versions 0.13 dated 2013-03-22 and 0.14 dated 2013-05-30
Description: Standardize country names, convert them into one of seven
coding schemes, convert between coding schemes, and assign
region descriptors.
Author: Vincent Arel-Bundock
Maintainer: Vincent Arel-Bundock
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 5 +++++
data/countrycode_data.csv | 2 +-
data/countrycode_data.rda |binary
5 files changed, 14 insertions(+), 9 deletions(-)
Title: OPtimal Design Of Experiments
Diff between OPDOE versions 1.0-6 dated 2013-05-22 and 1.0-7 dated 2013-05-30
Description: Experimental Design
Author: Petr Simecek
Maintainer: Albrecht Gebhardt
DESCRIPTION | 6 +-
MD5 | 22 +++++++---
NAMESPACE | 2
R/design.reg.polynom.R | 55 ++++++++++++++++++++++++--
R/size_n.three_way_nested.model_4_c.R | 14 ++++--
R/triangular.test.R | 70 ++++++++++++++++++++++++++--------
man/OPDOE-undocumented.Rd | 7 ---
man/design.reg.polynom.Rd |only
man/design.regression.Rd |only
man/print.design.regression.Rd |only
man/print.triangular.test.Rd |only
man/size.anova.Rd | 3 -
man/triangular.test.Rd |only
man/triangular.test.norm.Rd |only
man/triangular.test.prop.Rd |only
man/update.triangular.test.Rd |only
16 files changed, 135 insertions(+), 44 deletions(-)
Title: Nonparametric Methods for Cognitive Diagnosis
Diff between NPCD versions 1.0-2 dated 2013-04-04 and 1.0-3 dated 2013-05-30
Description: This package performs an array of nonparametric estimation
methods for cognitive diagnostic models, including
nonparametric estimation of examinee attribute profiles, joint
maximum likelihood estimation of examinee attribute profiles
and item parameters, and nonparametric refinement of the
Q-matrix, as well as parametric algorithms such as maximum
likelihood estimation of examinee attribute profiles given item
parameters and maximum likelihood estimation of item parameters
given examinee attribute profiles.
Author: Yi Zheng (University of Illinois at Urbana-Champaign) and
Chia-Yi Chiu (Rutgers, the State University of New Jersey),
with contributions from Jeffrey A. Douglas (University of
Illinois at Urbana-Champaign)
Maintainer: Yi Zheng
DESCRIPTION | 8 +++---
MD5 | 38 ++++++++++++++++----------------
R/AlphaMLE.R | 21 +++++++++++------
R/AlphaNP.R | 28 ++++++++++++-----------
R/JMLE.R | 45 ++++++++++++++++++++++++++++++--------
R/ParMLE.R | 10 +++++---
R/Qrefine.R | 3 +-
R/plot.NPCD.R | 37 +++++++++++++++++--------------
R/print.NPCD.R | 2 +
man/AlphaMLE.Rd | 9 +++++--
man/AlphaNP.Rd | 21 ++++++++++-------
man/Data.DINA.Rd | 19 ++++++++--------
man/Data.DINO.Rd | 19 ++++++++--------
man/Data.NIDA.Rd | 20 +++++++++--------
man/Data.Qrefine.Rd | 23 +++++++++++--------
man/JMLE.Rd | 61 +++++++++++++++++++---------------------------------
man/NPCD.Rd | 7 +++--
man/ParMLE.Rd | 2 -
man/Qrefine.Rd | 10 +++++---
man/plot.NPCD.Rd | 2 -
20 files changed, 214 insertions(+), 171 deletions(-)
Title: Graphical Interaction Models
Diff between gRim versions 0.1-15 dated 2012-12-28 and 0.1-16 dated 2013-05-30
Description: gRaphical Interaction Models:
Models for for contingency tables (i.e. log-linear models)
Graphical Gaussian models for multivariate normal data (i.e. covariance
selection models)
Mixed interaction models
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 6 ++++++
DESCRIPTION | 8 +++++---
MD5 | 11 ++++++-----
R/CGstats.R | 2 +-
gRim-Ex.R | 5 +++--
inst/doc/gRim.R |only
inst/doc/gRim.pdf |binary
7 files changed, 21 insertions(+), 11 deletions(-)
Title: Graphical Independence Networks
Diff between gRain versions 1.1-0 dated 2012-12-28 and 1.1-1 dated 2013-05-30
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems or Bayesian networks.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
gRain-1.1-0/gRain/R/simarray.R |only
gRain-1.1-1/gRain/ChangeLog | 11
gRain-1.1-1/gRain/DESCRIPTION | 7
gRain-1.1-1/gRain/MD5 | 37 -
gRain-1.1-1/gRain/R/CPT-POT-compile.R | 63 ---
gRain-1.1-1/gRain/R/CPT-POT-extract.R | 104 -----
gRain-1.1-1/gRain/R/cptable.R | 105 ++---
gRain-1.1-1/gRain/R/gRain-utilities.R | 12
gRain-1.1-1/gRain/R/grain-compile.R | 198 +++++----
gRain-1.1-1/gRain/R/grain-main.R | 112 ++---
gRain-1.1-1/gRain/R/loadSaveHuginNet.R | 2
gRain-1.1-1/gRain/R/predict.R | 11
gRain-1.1-1/gRain/R/propagate.R | 39 -
gRain-1.1-1/gRain/R/querygrain.R | 53 +-
gRain-1.1-1/gRain/gRain-Ex.R | 658 ++++++++++++++++----------------
gRain-1.1-1/gRain/man/compile.grain.Rd | 26 -
gRain-1.1-1/gRain/man/cptable.Rd | 67 ++-
gRain-1.1-1/gRain/man/extractCPT.Rd | 6
gRain-1.1-1/gRain/man/grain.Rd | 2
gRain-1.1-1/gRain/man/internal-gRain.Rd | 12
20 files changed, 725 insertions(+), 800 deletions(-)
Title: A fast solver for constrained l1 minimization approach to sparse
precision matrix estimation
Diff between fastclime versions 0.9 dated 2013-03-13 and 1.0 dated 2013-05-30
Description: The package "fastclime" provides a method of recover the
precision matrix efficiently by applying parametric simplex
method. The computation is based on a linear optimization
solver.
Author: Haotian Pang, Han Liu and Robert Vanderbei
Maintainer: Haotian Pang
fastclime-0.9/fastclime/R/fastclime.npn.R |only
fastclime-0.9/fastclime/man/fastclime.npn.Rd |only
fastclime-1.0/fastclime/DESCRIPTION | 8 ++---
fastclime-1.0/fastclime/MD5 | 31 ++++++++++-----------
fastclime-1.0/fastclime/NAMESPACE | 1
fastclime-1.0/fastclime/data |only
fastclime-1.0/fastclime/inst |only
fastclime-1.0/fastclime/man/fastclime-package.Rd | 9 ++----
fastclime-1.0/fastclime/man/fastclime.Rd | 8 ++---
fastclime-1.0/fastclime/man/fastclime.generator.Rd | 2 -
fastclime-1.0/fastclime/man/fastclime.plot.Rd | 2 -
fastclime-1.0/fastclime/man/fastclime.roc.Rd | 2 -
fastclime-1.0/fastclime/man/plot.fastclime.Rd | 2 -
fastclime-1.0/fastclime/man/plot.roc.Rd | 2 -
fastclime-1.0/fastclime/man/plot.sim.Rd | 2 -
fastclime-1.0/fastclime/man/print.fastclime.Rd | 2 -
fastclime-1.0/fastclime/man/print.roc.Rd | 2 -
fastclime-1.0/fastclime/man/print.sim.Rd | 2 -
fastclime-1.0/fastclime/man/stockdata.Rd |only
19 files changed, 37 insertions(+), 38 deletions(-)
More information about AppliedPredictiveModeling at CRAN
Permanent link