Title: R tools for integrating phylogenies and ecology
Diff between picante versions 1.5-2 dated 2012-10-09 and 1.6-0 dated 2013-05-31
Description: Phylocom integration, community analyses, null-models,
traits and evolution in R
Author: Steven W. Kembel
Maintainer: Steven W. Kembel
DESCRIPTION | 13 +-
MD5 | 81 ++++++++--------
R/expected.pd.R | 142 ++++++++++++++++++++++++++---
R/phyEstimate.R |only
R/randomizeSample.R | 4
inst/doc/picante-intro.R |only
inst/doc/picante-intro.Rnw | 2
inst/doc/picante-intro.pdf |binary
man/color.plot.phylo.Rd | 3
man/comdist.Rd | 2
man/comdistnt.Rd | 2
man/comm.phylo.cor.Rd | 2
man/comm.phylo.qr.Rd | 5 -
man/cor.table.Rd | 2
man/data.checking.Rd | 2
man/evol.distinct.Rd | 3
man/expected.pd.Rd | 27 ++++-
man/matrix2sample.Rd | 2
man/mntd.Rd | 2
man/mpd.Rd | 2
man/multiPhylosignal.Rd | 2
man/pblm.Rd | 217 ++++++++++++++++++++++-----------------------
man/pd.Rd | 2
man/pglmm.Rd | 9 +
man/phyEstimate.Rd |only
man/phylosignal.Rd | 2
man/phylosor.Rd | 2
man/phylosor.rnd.Rd | 2
man/phylostruct.Rd | 93 +++++++++----------
man/picante-package.Rd | 8 -
man/pruning.Rd | 2
man/randomizeSample.Rd | 5 -
man/raoD.Rd | 2
man/sample2matrix.Rd | 2
man/ses.mntd.Rd | 5 -
man/ses.mpd.Rd | 2
man/ses.pd.Rd | 2
man/species.dist.Rd | 2
man/sppregs.Rd | 115 ++++++++++++-----------
man/unifrac.Rd | 2
man/utility.Rd | 2
man/writesample.Rd | 2
man/writetraits.Rd | 2
43 files changed, 458 insertions(+), 320 deletions(-)
Title: Linked Micromap Plots
Diff between micromap versions 1.5 dated 2012-12-19 and 1.6 dated 2013-05-31
Description: This group of functions simplifies the creation of linked
micromap plots.
Author: Quinn Payton
Maintainer: Tom Kincaid
micromap-1.5/micromap/data/statesShapefile.rda |only
micromap-1.5/micromap/inst/doc/micromaps_intro_code.r |only
micromap-1.5/micromap/inst/doc/micromaps_library_intro.pdf |only
micromap-1.5/micromap/man/statesShapefile.Rd |only
micromap-1.6/micromap/DESCRIPTION | 9
micromap-1.6/micromap/MD5 | 31 +--
micromap-1.6/micromap/R/UtilityFunction.r |only
micromap-1.6/micromap/data/OrEcoLevel3.rda |binary
micromap-1.6/micromap/data/USstates.rda |only
micromap-1.6/micromap/data/WSA3.rda |binary
micromap-1.6/micromap/data/edPov.rda |binary
micromap-1.6/micromap/data/lungMort.rda |binary
micromap-1.6/micromap/data/statesFlatfile.rda |binary
micromap-1.6/micromap/data/vegCov.rda |binary
micromap-1.6/micromap/inst/CITATION | 6
micromap-1.6/micromap/inst/NEWS | 15 +
micromap-1.6/micromap/inst/NEWS.pdf |only
micromap-1.6/micromap/inst/doc/CHANGES.pdf |only
micromap-1.6/micromap/inst/doc/micromap_intro.pdf |only
micromap-1.6/micromap/inst/doc/micromap_intro_code.r |only
micromap-1.6/micromap/man/USstates.Rd |only
micromap-1.6/micromap/man/lmplot.Rd | 121 -------------
22 files changed, 42 insertions(+), 140 deletions(-)
Title: Symphony in R
Diff between Rsymphony versions 0.1-15 dated 2012-12-16 and 0.1-16 dated 2013-05-31
Description: An R interface to the SYMPHONY MILP solver. The package
code links to the local SYMPHONY installation. If no
installation is found by the configure script, version 5.4.7
will be installed from the included SYMPHONY sources.
Author: Reinhard Harter [aut], Kurt Hornik [aut, cre], Stefan Theussl
[aut]
Maintainer: Kurt Hornik
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v6 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v7 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v8 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Cgl/cgl_addlibs.txt.in |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Cgl/inc |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Clp/MSVisualStudio/v6 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Clp/MSVisualStudio/v7 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Clp/MSVisualStudio/v8 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Clp/clp_addlibs.txt.in |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Clp/inc |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/CoinUtils/MSVisualStudio/v6 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/CoinUtils/MSVisualStudio/v7 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/CoinUtils/MSVisualStudio/v8 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/CoinUtils/coinutils_addlibs.txt.in |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/CoinUtils/inc |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Externals |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/FlopC++ |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v6 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v7 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v8 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v9/libOsiCbc |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v9/libOsiClp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v9/libOsiSym |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/MSVisualStudio/v9/libOsiVol |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/examples/specific.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/inc |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/m4 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/osi_addlibs.txt.in |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/Makefile.am |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/Makefile.in |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiAuxInfo.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiAuxInfo.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiBranchingObject.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiBranchingObject.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiCbc |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiChooseVariable.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiChooseVariable.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiClp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiColCut.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiColCut.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiCollections.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiConfig.h |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiCut.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiCut.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiCuts.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiCuts.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiDylp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiFmp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiNames.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiOpbdpSolve.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiOpbdpSolve.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiOsl |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiPresolve.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiPresolve.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiRowCut.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiRowCut.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiRowCutDebugger.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiRowCutDebugger.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiSolverBranch.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiSolverBranch.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiSolverInterface.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiSolverInterface.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiSolverParameters.hpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiSym |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/src/OsiVol |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiCbcSolverInterfaceTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiClpSolverInterfaceTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiColCutTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiCutsTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiDylpSolverInterfaceTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiFmpSolverInterfaceTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiOslSolverInterfaceTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiRowCutDebuggerTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiRowCutTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiSolverInterfaceTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiSymSolverInterfaceTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/Osi/test/OsiVolSolverInterfaceTest.cpp |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/SYMPHONY/MSVisualStudio/sym.mak |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/SYMPHONY/MSVisualStudio/v8 |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/SYMPHONY/sym_addlibs.txt.in |only
Rsymphony-0.1-15/Rsymphony/src/SYMPHONY/SYMPHONY/test/OsiSolverInterfaceTest.cpp |only
Rsymphony-0.1-16/Rsymphony/DESCRIPTION | 15
Rsymphony-0.1-16/Rsymphony/MD5 | 2199
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/MSVisualStudio |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/Makemain.inc | 22
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/coin-functions |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/coin.m4 | 2668
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/commit_new_release | 312
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/commit_new_stable |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/compile_f2c/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/compile_f2c/compile_f2c | 6
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/headers/configall_system_msc.h | 24
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/prepare_new_release | 898
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/prepare_new_stable |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/run_autotools | 410
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/set_externals | 220
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/BuildTools/share/config.site | 14
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/LICENSE | 365
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v10 |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v10alt |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v9/Cgl.sln |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v9/CglUnitTest |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v9/libCgl/libCgl.vcproj | 996
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/MSVisualStudio/v9alt |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/Makefile.am | 49
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/Makefile.in | 359
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/cgl-uninstalled.pc.in |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/cgl.pc.in |only
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/config.sub |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/configure | 8354 +-
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/configure.ac | 102
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/doxydoc |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/examples/Makefile.in | 59
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/examples/cgl1.cpp | 12
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/examples/cgl_data_test.cpp | 6
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/install-sh |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/ltmain.sh |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/missing |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/CglAllDifferent.cpp | 8
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/CglAllDifferent.hpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/Makefile.am | 27
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglAllDifferent/Makefile.in | 221
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/CglClique.cpp | 36
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/CglClique.hpp | 5
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/CglCliqueHelper.cpp | 24
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/CglCliqueTest.cpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/Makefile.am | 24
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglClique/Makefile.in | 217
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglConfig.h | 67
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.cpp | 3
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglCutGenerator.hpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/CglDuplicateRow.cpp | 2399
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/CglDuplicateRow.hpp | 14
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/Makefile.am | 27
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglDuplicateRow/Makefile.in | 221
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/CglFlowCover.cpp | 19
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/CglFlowCover.hpp | 12
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/CglFlowCoverTest.cpp | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/Makefile.am | 28
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglFlowCover/Makefile.in | 222
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglGomory/CglGomory.cpp | 274
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglGomory/CglGomory.hpp | 33
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglGomory/CglGomoryTest.cpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglGomory/Makefile.am | 32
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglGomory/Makefile.in | 224
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/CglKnapsackCover.cpp | 74
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/CglKnapsackCover.hpp | 3
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/CglKnapsackCoverTest.cpp | 15
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/Makefile.am | 29
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglKnapsackCover/Makefile.in | 222
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.cpp | 615
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandP.hpp | 88
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPMessages.cpp | 39
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPMessages.hpp | 12
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPSimplex.cpp | 2568
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPSimplex.hpp | 228
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPTabRow.cpp | 42
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPTabRow.hpp | 88
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPTest.cpp | 558
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPUtils.cpp | 43
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPUtils.hpp | 34
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.cpp | 124
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/CglLandPValidator.hpp | 51
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/Makefile.am | 41
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLandP/Makefile.in | 262
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/CglLiftAndProject.cpp | 8
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/CglLiftAndProject.hpp | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/Makefile.am | 27
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglLiftAndProject/Makefile.in | 221
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMessage.cpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMessage.hpp | 3
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/CglMixedIntegerRounding.cpp | 26
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/CglMixedIntegerRounding.hpp | 10
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/CglMixedIntegerRoundingTest.cpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/Makefile.am | 28
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding/Makefile.in | 222
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/CglMixedIntegerRounding2.cpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/CglMixedIntegerRounding2.hpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/CglMixedIntegerRounding2Test.cpp | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/Makefile.am | 28
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglMixedIntegerRounding2/Makefile.in | 222
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglOddHole/CglOddHole.cpp | 13
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglOddHole/CglOddHole.hpp | 3
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglOddHole/CglOddHoleTest.cpp | 3
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Cgl/src/CglTwomir/CglTwomirTest.cpp | 3
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/examples/dualCuts.cpp | 550
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/examples/modify.cpp | 137
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/examples/testBasis.cpp | 176
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/src/ClpCholeskyTaucs.cpp | 696
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/src/ClpCholeskyWssmp.cpp | 1146
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/src/ClpCholeskyWssmpKKT.cpp | 919
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/src/ClpConstraint.cpp | 75
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/src/ClpDualRowPivot.cpp | 43
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Clp/src/ClpPackedMatrix.cpp |11799 +--
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/CoinUtils/src/CoinPostsolveMatrix.cpp | 3
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiGrb/OsiGrbSolverInterface.hpp | 34
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiMsk/OsiMskSolverInterface.cpp | 140
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiMsk/OsiMskSolverInterface.hpp | 34
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiSpx/Makefile.in | 211
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiSpx/OsiSpxSolverInterface.cpp | 787
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiSpx/OsiSpxSolverInterface.hpp | 83
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiXpr/Makefile.in | 199
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiXpr/OsiXprSolverInterface.cpp | 329
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/src/OsiXpr/OsiXprSolverInterface.hpp | 39
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/Makefile.in | 466
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiCpxSolverInterfaceTest.cpp | 927
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiGlpkSolverInterfaceTest.cpp | 1156
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiGrbSolverInterfaceTest.cpp | 934
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiMskSolverInterfaceTest.cpp | 965
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiSpxSolverInterfaceTest.cpp | 863
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiTestSolver.cpp |only
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiTestSolverInterfaceIO.cpp |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiTestSolverInterfaceTest.cpp |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/OsiXprSolverInterfaceTest.cpp | 1026
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/Osi/test/unitTest.cpp | 637
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/INSTALL | 220
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/LICENSE | 330
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/Makefile.in | 348
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/Makefile.orig | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_cg.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_cg_params.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_common_types.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_const.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_cp.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_cp_params.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_dg.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_dg_functions.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_io.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_lp.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_lp_params.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_macros.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_master_functions.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_messages.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/cnrp_types.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/compute_cost.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/network.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/include/small_graph.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/Common/cnrp_macros.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/Common/compute_cost.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/Common/network.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/CutGen/biconnected.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/CutGen/cnrp_cg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/CutGen/shrink.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/CutGen/tsp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/CutPool/cnrp_cp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/DrawGraph/cnrp_dg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/DrawGraph/cnrp_dg_functions.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/DrawGraph/cnrp_dg_network.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/LP/cnrp_lp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/LP/cnrp_lp_branch.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/Master/cnrp_io.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/Master/cnrp_main.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/Master/cnrp_master.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/Master/cnrp_master_functions.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/CNRP/src/Master/small_graph.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/INSTALL |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/INSTALL | 225
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/LICENSE | 330
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/MSVisualStudio/v10 |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/Makefile.in | 281
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/Makefile.orig | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/include/user.h | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/src/CutGen/user_cg.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/src/CutPool/user_cp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/src/DrawGraph/user_dg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/src/LP/user_lp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/src/LP/user_lp_branch.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/src/Master/user_main.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MATCH/src/Master/user_master.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MCKP/INSTALL | 169
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MCKP/LICENSE | 330
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MCKP/MSVisualStudio/v10 |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MCKP/Makefile.in | 241
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MCKP/Makefile.orig | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MCKP/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MCKP/mckp_main.c | 6
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/INSTALL | 225
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/LICENSE | 330
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/MSVisualStudio/v10 |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/Makefile.in | 280
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/Makefile.orig | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/include/mpp.h | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/src/CutGen/mpp_cg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/src/CutPool/mpp_cp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/src/DrawGraph/mpp_dg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/src/LP/mpp_lp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/src/LP/mpp_lp_branch.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/src/Master/mpp_main.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MPP/src/Master/mpp_master.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/MSVisualStudio/v10 |only
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/INSTALL | 226
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/LICENSE | 330
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/MSVisualStudio/v10 |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/Makefile.in | 294
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/Makefile.orig | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_cg.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_cg_clique.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_cg_functions.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_cg_params.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_common.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_constants.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_lp.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_lp_functions.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_lp_params.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_macros.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_master_functions.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/include/spp_types.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/Common/spp_common.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/CutGen/spp_cg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/CutGen/spp_cg_clique.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/CutGen/spp_cg_functions.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/CutPool/spp_cp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/DrawGraph/spp_dg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/LP/spp_lp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/LP/spp_lp_branch.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/LP/spp_lp_functions.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/Master/spp_main.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/Master/spp_master.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP+CUTS/src/Master/spp_master_functions.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/INSTALL | 223
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/LICENSE | 330
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/MSVisualStudio/v10 |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/Makefile.in | 288
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/Makefile.orig | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/README | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/include/spp.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/include/spp_common.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/include/spp_constants.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/include/spp_macros.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/include/spp_master_functions.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/include/spp_types.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/Common/spp_common.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/CutGen/spp_cg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/CutPool/spp_cp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/DrawGraph/spp_dg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/LP/spp_lp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/LP/spp_lp_branch.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/Master/spp_main.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/Master/spp_master.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/SPP/src/Master/spp_master_functions.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/INSTALL | 225
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/MSVisualStudio/v10 |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/Makefile.in | 279
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/Makefile.orig | 2
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/include/user.h | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/src/CutGen/user_cg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/src/CutPool/user_cp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/src/DrawGraph/user_dg.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/src/LP/user_lp.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/src/LP/user_lp_branch.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/src/Master/user_main.c | 4
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/USER/src/Master/user_master.c | 2
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/VRP/INSTALL | 228
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/VRP/LICENSE | 330
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/VRP/MSVisualStudio/v10 |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/VRP/Makefile.in | 334
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/VRP/Makefile.orig | 2
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/SYMPHONY/Applications/VRP/include/compute_cost.h | 4
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Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Blas/configure.ac | 35
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Blas/depcomp |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Blas/get.Blas | 5
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Blas/install-sh |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Blas/ltmain.sh |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Blas/missing |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/INSTALL.Glpk | 8
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/Makefile.am | 95
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/Makefile.in | 763
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/coinglpk-uninstalled.pc.in |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/coinglpk.pc.in |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/config.guess |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/config.h |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/config.sub |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/config_glpk.h.in |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/configure | 3123
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/configure.ac | 233
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/depcomp |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/get.Glpk | 7
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/glpk.patch | 6
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/install-sh |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/ltmain.sh |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Glpk/missing |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/INSTALL.LAPACK | 13
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/Makefile.am | 31
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/Makefile.in | 206
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/coinlapack-uninstalled.pc.in |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/coinlapack.pc.in |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/config.guess |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/config.sub |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/configure |36668 +++++-----
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/configure.ac | 60
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/depcomp |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/get.Lapack | 17
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/install-sh |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/ltmain.sh |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/ThirdParty/Lapack/missing |only
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/configure | 2515
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/configure.ac | 55
Rsymphony-0.1-16/Rsymphony/src/SYMPHONY/share/config.site | 4
1063 files changed, 222050 insertions(+), 180997 deletions(-)
Title: An R Package for Simulating IRT-Based Computerized Adaptive
Tests
Diff between catIrt versions 0.4-0 dated 2013-04-25 and 0.4-1 dated 2013-05-31
Description: Functions designed to simulate data that conform to basic
unidimensional IRT models (for now 3-parameter binary response
models and graded response models) along with Post-Hoc CAT
simulations of those models with various item selection
methods, ability estimation methods, and termination criteria.
Author: Steven W. Nydick
Maintainer: Steven W. Nydick
catIrt-0.4-0/catIrt/NEWS |only
catIrt-0.4-1/catIrt/DESCRIPTION | 8 ++++----
catIrt-0.4-1/catIrt/MD5 | 12 ++++++------
catIrt-0.4-1/catIrt/NAMESPACE | 2 +-
catIrt-0.4-1/catIrt/R/WFI.R | 12 ++++++++----
catIrt-0.4-1/catIrt/R/catIrt.R | 5 ++++-
catIrt-0.4-1/catIrt/inst |only
catIrt-0.4-1/catIrt/man/catIrt-package.Rd | 4 ++--
8 files changed, 25 insertions(+), 18 deletions(-)
Title: Log-Gaussian Cox Process
Diff between lgcp versions 1.01 dated 2013-01-23 and 1.3 dated 2013-05-31
Description: Spatial and spatio-temporal modelling of point patterns
using the log-Gaussian Cox process
Author: B. M. Taylor, T. M. Davies, B. S. Rowlingson, P. J. Diggle.
Additional code contributions from E. Pebesma.
Maintainer: Benjamin M. Taylor
lgcp-1.01/lgcp/man/Extract-dot-mstppp.Rd |only
lgcp-1.01/lgcp/man/Extract-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/GAfinalise-dot-MonteCarloAverage.Rd |only
lgcp-1.01/lgcp/man/GAfinalise-dot-nullAverage.Rd |only
lgcp-1.01/lgcp/man/GAinitialise-dot-MonteCarloAverage.Rd |only
lgcp-1.01/lgcp/man/GAinitialise-dot-nullAverage.Rd |only
lgcp-1.01/lgcp/man/GAreturnvalue-dot-MonteCarloAverage.Rd |only
lgcp-1.01/lgcp/man/GAreturnvalue-dot-nullAverage.Rd |only
lgcp-1.01/lgcp/man/GAupdate-dot-MonteCarloAverage.Rd |only
lgcp-1.01/lgcp/man/GAupdate-dot-nullAverage.Rd |only
lgcp-1.01/lgcp/man/GFfinalise-dot-dump2dir.Rd |only
lgcp-1.01/lgcp/man/GFfinalise-dot-nullFunction.Rd |only
lgcp-1.01/lgcp/man/GFinitialise-dot-dump2dir.Rd |only
lgcp-1.01/lgcp/man/GFinitialise-dot-nullFunction.Rd |only
lgcp-1.01/lgcp/man/GFreturnvalue-dot-dump2dir.Rd |only
lgcp-1.01/lgcp/man/GFreturnvalue-dot-nullFunction.Rd |only
lgcp-1.01/lgcp/man/GFupdate-dot-dump2dir.Rd |only
lgcp-1.01/lgcp/man/GFupdate-dot-nullFunction.Rd |only
lgcp-1.01/lgcp/man/SpatialPolygonsDataFrame-dot-stapp.Rd |only
lgcp-1.01/lgcp/man/add-dot-list.Rd |only
lgcp-1.01/lgcp/man/affine-dot-SpatialPolygonsDataFrame.Rd |only
lgcp-1.01/lgcp/man/affine-dot-fromFunction.Rd |only
lgcp-1.01/lgcp/man/affine-dot-fromSPDF.Rd |only
lgcp-1.01/lgcp/man/affine-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/affine-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/as-dot-SpatialGridDataFrame-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/as-dot-SpatialGridDataFrame.Rd |only
lgcp-1.01/lgcp/man/as-dot-SpatialPixelsDataFrame-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/as-dot-SpatialPixelsDataFrame.Rd |only
lgcp-1.01/lgcp/man/as-dot-array-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/as-dot-fromXYZ-dot-fromFunction.Rd |only
lgcp-1.01/lgcp/man/as-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/as-dot-im-dot-fromFunction.Rd |only
lgcp-1.01/lgcp/man/as-dot-im-dot-fromSPDF.Rd |only
lgcp-1.01/lgcp/man/as-dot-im-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/as-dot-list-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/as-dot-owin-dot-stapp.Rd |only
lgcp-1.01/lgcp/man/as-dot-owinlist-dot-SpatialPolygonsDataFrame.Rd |only
lgcp-1.01/lgcp/man/as-dot-owinlist-dot-stapp.Rd |only
lgcp-1.01/lgcp/man/as-dot-owinlist.Rd |only
lgcp-1.01/lgcp/man/as-dot-ppp-dot-mstppp.Rd |only
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lgcp-1.01/lgcp/man/as-dot-stppp-dot-stapp.Rd |only
lgcp-1.01/lgcp/man/as-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/bt-dot-scalar.Rd |only
lgcp-1.01/lgcp/man/circulant-dot-matrix.Rd |only
lgcp-1.01/lgcp/man/circulant-dot-numeric.Rd |only
lgcp-1.01/lgcp/man/constantInTime-dot-numeric.Rd |only
lgcp-1.01/lgcp/man/constantInTime-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/d-dot-func.Rd |only
lgcp-1.01/lgcp/man/density-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/discreteWindow-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/dot-onAttach.Rd |only
lgcp-1.01/lgcp/man/expectation-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/extract-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/fftinterpolate-dot-fromFunction.Rd |only
lgcp-1.01/lgcp/man/fftinterpolate-dot-fromSPDF.Rd |only
lgcp-1.01/lgcp/man/fftinterpolate-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/getRotation-dot-default.Rd |only
lgcp-1.01/lgcp/man/getRotation-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/gridav-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/gridfun-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/hasNext-dot-iter.Rd |only
lgcp-1.01/lgcp/man/hvals-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/identify-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/image-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/initialiseAMCMC-dot-andrieuthomsh.Rd |only
lgcp-1.01/lgcp/man/initialiseAMCMC-dot-constanth.Rd |only
lgcp-1.01/lgcp/man/integerise-dot-mstppp.Rd |only
lgcp-1.01/lgcp/man/integerise-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/intens-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/is-dot-SPD.Rd |only
lgcp-1.01/lgcp/man/is-dot-burnin.Rd |only
lgcp-1.01/lgcp/man/is-dot-pow2.Rd |only
lgcp-1.01/lgcp/man/is-dot-retain.Rd |only
lgcp-1.01/lgcp/man/lambdaEst-dot-ppp.Rd |only
lgcp-1.01/lgcp/man/lambdaEst-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/lgcpgrid-dot-array.Rd |only
lgcp-1.01/lgcp/man/lgcpgrid-dot-list.Rd |only
lgcp-1.01/lgcp/man/lgcpgrid-dot-matrix.Rd |only
lgcp-1.01/lgcp/man/loop-dot-mcmc.Rd |only
lgcp-1.01/lgcp/man/mcmctrace-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/meanfield-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/meanfield-dot-lgcpPredictINLA.Rd |only
lgcp-1.01/lgcp/man/mstppp-dot-list.Rd |only
lgcp-1.01/lgcp/man/mstppp-dot-ppp.Rd |only
lgcp-1.01/lgcp/man/mstppp-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/multiply-dot-list.Rd |only
lgcp-1.01/lgcp/man/plot-dot-fromSPDF.Rd |only
lgcp-1.01/lgcp/man/plot-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/plot-dot-lgcpAutocorr.Rd |only
lgcp-1.01/lgcp/man/plot-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/plot-dot-lgcpQuantiles.Rd |only
lgcp-1.01/lgcp/man/plot-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/plot-dot-mcmcdiag.Rd |only
lgcp-1.01/lgcp/man/plot-dot-mstppp.Rd |only
lgcp-1.01/lgcp/man/plot-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/plot-dot-temporalAtRisk.Rd |only
lgcp-1.01/lgcp/man/plotExceed-dot-array.Rd |only
lgcp-1.01/lgcp/man/plotExceed-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/print-dot-dump2dir.Rd |only
lgcp-1.01/lgcp/man/print-dot-fromFunction.Rd |only
lgcp-1.01/lgcp/man/print-dot-fromSPDF.Rd |only
lgcp-1.01/lgcp/man/print-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/print-dot-gridaverage.Rd |only
lgcp-1.01/lgcp/man/print-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/print-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/print-dot-mcmc.Rd |only
lgcp-1.01/lgcp/man/print-dot-mstppp.Rd |only
lgcp-1.01/lgcp/man/print-dot-stapp.Rd |only
lgcp-1.01/lgcp/man/print-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/print-dot-temporalAtRisk.Rd |only
lgcp-1.01/lgcp/man/quantile-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/quantile-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/raster-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/rescale-dot-mstppp.Rd |only
lgcp-1.01/lgcp/man/rescale-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/rr-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/seintens-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/selectObsWindow-dot-default.Rd |only
lgcp-1.01/lgcp/man/selectObsWindow-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/serr-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/showGrid-dot-default.Rd |only
lgcp-1.01/lgcp/man/showGrid-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/showGrid-dot-stppp.Rd |only
lgcp-1.01/lgcp/man/smultiply-dot-list.Rd |only
lgcp-1.01/lgcp/man/spatialAtRisk-dot-SpatialGridDataFrame.Rd |only
lgcp-1.01/lgcp/man/spatialAtRisk-dot-SpatialPolygonsDataFrame.Rd |only
lgcp-1.01/lgcp/man/spatialAtRisk-dot-bivden.Rd |only
lgcp-1.01/lgcp/man/spatialAtRisk-dot-default.Rd |only
lgcp-1.01/lgcp/man/spatialAtRisk-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/spatialAtRisk-dot-function.Rd |only
lgcp-1.01/lgcp/man/spatialAtRisk-dot-im.Rd |only
lgcp-1.01/lgcp/man/spatialAtRisk-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/spatialIntensities-dot-fromSPDF.Rd |only
lgcp-1.01/lgcp/man/spatialIntensities-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/stapp-dot-SpatialPolygonsDataFrame.Rd |only
lgcp-1.01/lgcp/man/stapp-dot-list.Rd |only
lgcp-1.01/lgcp/man/stppp-dot-list.Rd |only
lgcp-1.01/lgcp/man/stppp-dot-ppp.Rd |only
lgcp-1.01/lgcp/man/summary-dot-lgcpgrid.Rd |only
lgcp-1.01/lgcp/man/summary-dot-mcmc.Rd |only
lgcp-1.01/lgcp/man/target-dot-and-dot-grad-dot-spatial.Rd |only
lgcp-1.01/lgcp/man/target-dot-and-dot-grad-dot-spatiotemporal.Rd |only
lgcp-1.01/lgcp/man/temporalAtRisk-dot-function.Rd |only
lgcp-1.01/lgcp/man/temporalAtRisk-dot-numeric.Rd |only
lgcp-1.01/lgcp/man/toral-dot-cov-dot-mat.Rd |only
lgcp-1.01/lgcp/man/updateAMCMC-dot-andrieuthomsh.Rd |only
lgcp-1.01/lgcp/man/updateAMCMC-dot-constanth.Rd |only
lgcp-1.01/lgcp/man/varfield-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/varfield-dot-lgcpPredictINLA.Rd |only
lgcp-1.01/lgcp/man/window-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/xvals-dot-SpatialGridDataFrame.Rd |only
lgcp-1.01/lgcp/man/xvals-dot-default.Rd |only
lgcp-1.01/lgcp/man/xvals-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/xvals-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/yvals-dot-SpatialGridDataFrame.Rd |only
lgcp-1.01/lgcp/man/yvals-dot-default.Rd |only
lgcp-1.01/lgcp/man/yvals-dot-fromXYZ.Rd |only
lgcp-1.01/lgcp/man/yvals-dot-lgcpPredict.Rd |only
lgcp-1.01/lgcp/man/zvals-dot-SpatialGridDataFrame.Rd |only
lgcp-1.01/lgcp/man/zvals-dot-default.Rd |only
lgcp-1.01/lgcp/man/zvals-dot-fromXYZ.Rd |only
lgcp-1.3/lgcp/DESCRIPTION | 24
lgcp-1.3/lgcp/MD5 | 706 +++++-----
lgcp-1.3/lgcp/NAMESPACE | 578 ++++----
lgcp-1.3/lgcp/NEWS |only
lgcp-1.3/lgcp/R/AggregateSpatialOnlyPlusParameters.R |only
lgcp-1.3/lgcp/R/MultitypeSpatialOnlyPlusParameters.R |only
lgcp-1.3/lgcp/R/SpatialOnlyPlusParameters.R |only
lgcp-1.3/lgcp/R/SpatioTemporalPlusParameters.R |only
lgcp-1.3/lgcp/R/adaptiveSchemes.R | 6
lgcp-1.3/lgcp/R/arealMethods.R | 10
lgcp-1.3/lgcp/R/computeGradtrunc.R | 6
lgcp-1.3/lgcp/R/fftgrid.R | 102 +
lgcp-1.3/lgcp/R/geometryHandling.R |only
lgcp-1.3/lgcp/R/getCounts.R | 6
lgcp-1.3/lgcp/R/gridAverageMethods.R | 33
lgcp-1.3/lgcp/R/gridFunctionMethods.R | 10
lgcp-1.3/lgcp/R/lgcp.R | 6
lgcp-1.3/lgcp/R/lgcpForecast.R | 13
lgcp-1.3/lgcp/R/lgcpInternals.R | 9
lgcp-1.3/lgcp/R/lgcpMethods.R | 286 +++-
lgcp-1.3/lgcp/R/lgcpPredictSpatial.R | 34
lgcp-1.3/lgcp/R/lgcpPredictSpatioTemporal.R | 79 -
lgcp-1.3/lgcp/R/lgcpSimSpatioTemporal.R | 32
lgcp-1.3/lgcp/R/lgcpStructures.R |only
lgcp-1.3/lgcp/R/minimumContrast.R |only
lgcp-1.3/lgcp/R/mstpppClassDef.R | 4
lgcp-1.3/lgcp/R/parameterEstimation.R | 33
lgcp-1.3/lgcp/R/selectObsWindow.R | 1
lgcp-1.3/lgcp/R/spatialAtRiskClassDef.R | 36
lgcp-1.3/lgcp/R/spatialOnly.R | 19
lgcp-1.3/lgcp/R/stpppClassDef.R | 6
lgcp-1.3/lgcp/R/temporalAtRiskClassDef.R | 12
lgcp-1.3/lgcp/R/zzz.R | 6
lgcp-1.3/lgcp/inst/CITATION | 22
lgcp-1.3/lgcp/inst/doc/lgcp.R |only
lgcp-1.3/lgcp/inst/doc/lgcp.pdf |binary
lgcp-1.3/lgcp/man/BetaParameters.Rd |only
lgcp-1.3/lgcp/man/C.diff.single.im.Rd |only
lgcp-1.3/lgcp/man/CovFunction.Rd |only
lgcp-1.3/lgcp/man/CovFunction.function.Rd |only
lgcp-1.3/lgcp/man/CovParameters.Rd |only
lgcp-1.3/lgcp/man/Cvb.Rd | 57
lgcp-1.3/lgcp/man/EvaluatePrior.Rd |only
lgcp-1.3/lgcp/man/Extract.mstppp.Rd |only
lgcp-1.3/lgcp/man/Extract.stppp.Rd |only
lgcp-1.3/lgcp/man/GAfinalise.MonteCarloAverage.Rd |only
lgcp-1.3/lgcp/man/GAfinalise.Rd | 34
lgcp-1.3/lgcp/man/GAfinalise.nullAverage.Rd |only
lgcp-1.3/lgcp/man/GAinitialise.MonteCarloAverage.Rd |only
lgcp-1.3/lgcp/man/GAinitialise.Rd | 34
lgcp-1.3/lgcp/man/GAinitialise.nullAverage.Rd |only
lgcp-1.3/lgcp/man/GAreturnvalue.MonteCarloAverage.Rd |only
lgcp-1.3/lgcp/man/GAreturnvalue.Rd | 33
lgcp-1.3/lgcp/man/GAreturnvalue.nullAverage.Rd |only
lgcp-1.3/lgcp/man/GAupdate.MonteCarloAverage.Rd |only
lgcp-1.3/lgcp/man/GAupdate.Rd | 33
lgcp-1.3/lgcp/man/GAupdate.nullAverage.Rd |only
lgcp-1.3/lgcp/man/GFfinalise.Rd | 32
lgcp-1.3/lgcp/man/GFfinalise.dump2dir.Rd |only
lgcp-1.3/lgcp/man/GFfinalise.nullFunction.Rd |only
lgcp-1.3/lgcp/man/GFinitialise.Rd | 32
lgcp-1.3/lgcp/man/GFinitialise.dump2dir.Rd |only
lgcp-1.3/lgcp/man/GFinitialise.nullFunction.Rd |only
lgcp-1.3/lgcp/man/GFreturnvalue.Rd | 32
lgcp-1.3/lgcp/man/GFreturnvalue.dump2dir.Rd |only
lgcp-1.3/lgcp/man/GFreturnvalue.nullFunction.Rd |only
lgcp-1.3/lgcp/man/GFupdate.Rd | 32
lgcp-1.3/lgcp/man/GFupdate.dump2dir.Rd |only
lgcp-1.3/lgcp/man/GFupdate.nullFunction.Rd |only
lgcp-1.3/lgcp/man/GPdrv.Rd |only
lgcp-1.3/lgcp/man/GPdrv2.Rd |only
lgcp-1.3/lgcp/man/GPdrv2_Multitype.Rd |only
lgcp-1.3/lgcp/man/GPlist2array.Rd |only
lgcp-1.3/lgcp/man/GPrealisation.Rd |only
lgcp-1.3/lgcp/man/GammafromY.Rd | 28
lgcp-1.3/lgcp/man/GaussianPrior.Rd |only
lgcp-1.3/lgcp/man/K.diff.single.Rd |only
lgcp-1.3/lgcp/man/K.u.Rd |only
lgcp-1.3/lgcp/man/K.val.Rd |only
lgcp-1.3/lgcp/man/KinhomAverage.Rd | 78 -
lgcp-1.3/lgcp/man/LogGaussianPrior.Rd |only
lgcp-1.3/lgcp/man/MALAlgcp.Rd | 115 +
lgcp-1.3/lgcp/man/MALAlgcpAggregateSpatial.PlusPars.Rd |only
lgcp-1.3/lgcp/man/MALAlgcpMultitypeSpatial.PlusPars.Rd |only
lgcp-1.3/lgcp/man/MALAlgcpSpatial.PlusPars.Rd |only
lgcp-1.3/lgcp/man/MALAlgcpSpatial.Rd | 99 -
lgcp-1.3/lgcp/man/MALAlgcpSpatioTemporal.PlusPars.Rd |only
lgcp-1.3/lgcp/man/MonteCarloAverage.Rd | 92 -
lgcp-1.3/lgcp/man/PriorSpec.Rd |only
lgcp-1.3/lgcp/man/PriorSpec.list.Rd |only
lgcp-1.3/lgcp/man/RandomFieldsCovFct.Rd |only
lgcp-1.3/lgcp/man/SpatialPolygonsDataFrame.stapp.Rd |only
lgcp-1.3/lgcp/man/SpikedExponentialCovFct.Rd |only
lgcp-1.3/lgcp/man/YfromGamma.Rd | 28
lgcp-1.3/lgcp/man/add.list.Rd |only
lgcp-1.3/lgcp/man/addTemporalCovariates.Rd |only
lgcp-1.3/lgcp/man/affine.SpatialPolygonsDataFrame.Rd |only
lgcp-1.3/lgcp/man/affine.fromFunction.Rd |only
lgcp-1.3/lgcp/man/affine.fromSPDF.Rd |only
lgcp-1.3/lgcp/man/affine.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/affine.stppp.Rd |only
lgcp-1.3/lgcp/man/aggCovInfo.ArealWeightedMean.Rd |only
lgcp-1.3/lgcp/man/aggCovInfo.ArealWeightedSum.Rd |only
lgcp-1.3/lgcp/man/aggCovInfo.Majority.Rd |only
lgcp-1.3/lgcp/man/aggCovInfo.Rd |only
lgcp-1.3/lgcp/man/aggregateCovariateInfo.Rd |only
lgcp-1.3/lgcp/man/aggregateformulaList.Rd |only
lgcp-1.3/lgcp/man/andrieuthomsh.Rd | 91 -
lgcp-1.3/lgcp/man/as.SpatialGridDataFrame.Rd |only
lgcp-1.3/lgcp/man/as.SpatialGridDataFrame.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/as.SpatialPixelsDataFrame.Rd |only
lgcp-1.3/lgcp/man/as.SpatialPixelsDataFrame.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/as.array.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/as.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/as.fromXYZ.fromFunction.Rd |only
lgcp-1.3/lgcp/man/as.im.fromFunction.Rd |only
lgcp-1.3/lgcp/man/as.im.fromSPDF.Rd |only
lgcp-1.3/lgcp/man/as.im.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/as.list.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/as.owin.stapp.Rd |only
lgcp-1.3/lgcp/man/as.owinlist.Rd |only
lgcp-1.3/lgcp/man/as.owinlist.SpatialPolygonsDataFrame.Rd |only
lgcp-1.3/lgcp/man/as.owinlist.stapp.Rd |only
lgcp-1.3/lgcp/man/as.ppp.mstppp.Rd |only
lgcp-1.3/lgcp/man/as.ppp.stppp.Rd |only
lgcp-1.3/lgcp/man/as.stppp.Rd |only
lgcp-1.3/lgcp/man/as.stppp.stapp.Rd |only
lgcp-1.3/lgcp/man/assigninterp.Rd |only
lgcp-1.3/lgcp/man/at.Rd | 26
lgcp-1.3/lgcp/man/autocorr.Rd | 61
lgcp-1.3/lgcp/man/autocorrMultitype.Rd |only
lgcp-1.3/lgcp/man/betavals.Rd |only
lgcp-1.3/lgcp/man/blockcircbase.Rd | 47
lgcp-1.3/lgcp/man/blockcircbaseFunction.Rd |only
lgcp-1.3/lgcp/man/bt.scalar.Rd |only
lgcp-1.3/lgcp/man/checkObsWin.Rd |only
lgcp-1.3/lgcp/man/chooseCellwidth.Rd |only
lgcp-1.3/lgcp/man/circulant.Rd | 23
lgcp-1.3/lgcp/man/circulant.matrix.Rd |only
lgcp-1.3/lgcp/man/circulant.numeric.Rd |only
lgcp-1.3/lgcp/man/clearinterp.Rd |only
lgcp-1.3/lgcp/man/computeGradtruncSpatial.Rd | 61
lgcp-1.3/lgcp/man/computeGradtruncSpatioTemporal.Rd | 65
lgcp-1.3/lgcp/man/condProbs.Rd |only
lgcp-1.3/lgcp/man/constantInTime.Rd | 41
lgcp-1.3/lgcp/man/constantInTime.numeric.Rd |only
lgcp-1.3/lgcp/man/constantInTime.stppp.Rd |only
lgcp-1.3/lgcp/man/constanth.Rd | 33
lgcp-1.3/lgcp/man/cov.interp.fft.Rd |only
lgcp-1.3/lgcp/man/covEffects.Rd |only
lgcp-1.3/lgcp/man/d.func.Rd |only
lgcp-1.3/lgcp/man/density.stppp.Rd |only
lgcp-1.3/lgcp/man/discreteWindow.Rd | 27
lgcp-1.3/lgcp/man/discreteWindow.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/dump2dir.Rd | 54
lgcp-1.3/lgcp/man/eigenfrombase.Rd | 21
lgcp-1.3/lgcp/man/etavals.Rd |only
lgcp-1.3/lgcp/man/exceedProbs.Rd | 47
lgcp-1.3/lgcp/man/exceedProbsAggregated.Rd | 55
lgcp-1.3/lgcp/man/expectation.Rd | 24
lgcp-1.3/lgcp/man/expectation.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/expectation.lgcpPredictSpatialOnlyPlusParameters.Rd |only
lgcp-1.3/lgcp/man/exponentialCovFct.Rd |only
lgcp-1.3/lgcp/man/extendspatialAtRisk.Rd |only
lgcp-1.3/lgcp/man/extract.Rd | 29
lgcp-1.3/lgcp/man/extract.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/fftgrid.Rd | 60
lgcp-1.3/lgcp/man/fftinterpolate.Rd | 28
lgcp-1.3/lgcp/man/fftinterpolate.fromFunction.Rd |only
lgcp-1.3/lgcp/man/fftinterpolate.fromSPDF.Rd |only
lgcp-1.3/lgcp/man/fftinterpolate.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/fftmultiply.Rd |only
lgcp-1.3/lgcp/man/formulaList.Rd |only
lgcp-1.3/lgcp/man/g.diff.single.Rd |only
lgcp-1.3/lgcp/man/gOverlay.Rd |only
lgcp-1.3/lgcp/man/genFFTgrid.Rd |only
lgcp-1.3/lgcp/man/getCellCounts.Rd | 30
lgcp-1.3/lgcp/man/getCounts.Rd | 48
lgcp-1.3/lgcp/man/getCovParameters.GPrealisation.Rd |only
lgcp-1.3/lgcp/man/getCovParameters.Rd |only
lgcp-1.3/lgcp/man/getCovParameters.list.Rd |only
lgcp-1.3/lgcp/man/getLHSformulaList.Rd |only
lgcp-1.3/lgcp/man/getRotation.Rd | 28
lgcp-1.3/lgcp/man/getRotation.default.Rd |only
lgcp-1.3/lgcp/man/getRotation.stppp.Rd |only
lgcp-1.3/lgcp/man/getZmat.Rd |only
lgcp-1.3/lgcp/man/getZmats.Rd |only
lgcp-1.3/lgcp/man/getinterp.Rd |only
lgcp-1.3/lgcp/man/getlgcpPredictSpatialINLA.Rd | 16
lgcp-1.3/lgcp/man/getpolyol.Rd |only
lgcp-1.3/lgcp/man/getup.Rd |only
lgcp-1.3/lgcp/man/ginhomAverage.Rd | 81 -
lgcp-1.3/lgcp/man/grid2spdf.Rd |only
lgcp-1.3/lgcp/man/grid2spix.Rd |only
lgcp-1.3/lgcp/man/grid2spoly.Rd |only
lgcp-1.3/lgcp/man/grid2spts.Rd |only
lgcp-1.3/lgcp/man/gridInWindow.Rd | 38
lgcp-1.3/lgcp/man/gridav.Rd | 28
lgcp-1.3/lgcp/man/gridav.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/gridfun.Rd | 28
lgcp-1.3/lgcp/man/gridfun.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/gu.Rd | 35
lgcp-1.3/lgcp/man/guessinterp.Rd |only
lgcp-1.3/lgcp/man/hasNext.Rd | 16
lgcp-1.3/lgcp/man/hasNext.iter.Rd |only
lgcp-1.3/lgcp/man/hvals.Rd | 24
lgcp-1.3/lgcp/man/hvals.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/identify.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/identifygrid.Rd | 30
lgcp-1.3/lgcp/man/image.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/initialiseAMCMC.Rd | 34
lgcp-1.3/lgcp/man/initialiseAMCMC.andrieuthomsh.Rd |only
lgcp-1.3/lgcp/man/initialiseAMCMC.constanth.Rd |only
lgcp-1.3/lgcp/man/integerise.Rd | 28
lgcp-1.3/lgcp/man/integerise.mstppp.Rd |only
lgcp-1.3/lgcp/man/integerise.stppp.Rd |only
lgcp-1.3/lgcp/man/intens.Rd | 27
lgcp-1.3/lgcp/man/intens.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/intens.lgcpSimMultitypeSpatialPlusParameters.Rd |only
lgcp-1.3/lgcp/man/intens.lgcpSimSpatialPlusParameters.Rd |only
lgcp-1.3/lgcp/man/interptypes.Rd |only
lgcp-1.3/lgcp/man/inversebase.Rd | 21
lgcp-1.3/lgcp/man/is.SPD.Rd |only
lgcp-1.3/lgcp/man/is.burnin.Rd |only
lgcp-1.3/lgcp/man/is.pow2.Rd |only
lgcp-1.3/lgcp/man/is.retain.Rd |only
lgcp-1.3/lgcp/man/iteration.Rd | 24
lgcp-1.3/lgcp/man/lambdaEst.Rd | 29
lgcp-1.3/lgcp/man/lambdaEst.ppp.Rd |only
lgcp-1.3/lgcp/man/lambdaEst.stppp.Rd |only
lgcp-1.3/lgcp/man/lgcp.Rd | 124 +
lgcp-1.3/lgcp/man/lgcpForecast.Rd | 56
lgcp-1.3/lgcp/man/lgcpInits.Rd |only
lgcp-1.3/lgcp/man/lgcpPredict.Rd | 277 ++-
lgcp-1.3/lgcp/man/lgcpPredictAggregateSpatialPlusPars.Rd |only
lgcp-1.3/lgcp/man/lgcpPredictAggregated.Rd | 289 ++--
lgcp-1.3/lgcp/man/lgcpPredictMultitypeSpatialPlusPars.Rd |only
lgcp-1.3/lgcp/man/lgcpPredictSpatial.Rd | 199 +-
lgcp-1.3/lgcp/man/lgcpPredictSpatialINLA.Rd | 216 ++-
lgcp-1.3/lgcp/man/lgcpPredictSpatialPlusPars.Rd |only
lgcp-1.3/lgcp/man/lgcpPredictSpatioTemporalPlusPars.Rd |only
lgcp-1.3/lgcp/man/lgcpPrior.Rd |only
lgcp-1.3/lgcp/man/lgcpSim.Rd | 189 +-
lgcp-1.3/lgcp/man/lgcpSimMultitypeSpatialCovariates.Rd |only
lgcp-1.3/lgcp/man/lgcpSimSpatial.Rd | 63
lgcp-1.3/lgcp/man/lgcpSimSpatialCovariates.Rd |only
lgcp-1.3/lgcp/man/lgcpgrid.Rd | 57
lgcp-1.3/lgcp/man/lgcpgrid.array.Rd |only
lgcp-1.3/lgcp/man/lgcpgrid.list.Rd |only
lgcp-1.3/lgcp/man/lgcpgrid.matrix.Rd |only
lgcp-1.3/lgcp/man/lgcppars.Rd | 40
lgcp-1.3/lgcp/man/loc2poly.Rd | 48
lgcp-1.3/lgcp/man/loop.mcmc.Rd |only
lgcp-1.3/lgcp/man/ltar.Rd |only
lgcp-1.3/lgcp/man/matchcovariance.Rd | 56
lgcp-1.3/lgcp/man/mcmcLoop.Rd | 31
lgcp-1.3/lgcp/man/mcmcProgressNone.Rd | 20
lgcp-1.3/lgcp/man/mcmcProgressPrint.Rd | 20
lgcp-1.3/lgcp/man/mcmcProgressTextBar.Rd | 20
lgcp-1.3/lgcp/man/mcmcProgressTk.Rd | 20
lgcp-1.3/lgcp/man/mcmcpars.Rd | 42
lgcp-1.3/lgcp/man/mcmctrace.Rd | 24
lgcp-1.3/lgcp/man/mcmctrace.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/meanfield.Rd | 24
lgcp-1.3/lgcp/man/meanfield.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/meanfield.lgcpPredictINLA.Rd |only
lgcp-1.3/lgcp/man/minimum.contrast.Rd |only
lgcp-1.3/lgcp/man/minimum.contrast.spatiotemporal.Rd |only
lgcp-1.3/lgcp/man/mstppp.Rd | 35
lgcp-1.3/lgcp/man/mstppp.list.Rd |only
lgcp-1.3/lgcp/man/mstppp.ppp.Rd |only
lgcp-1.3/lgcp/man/mstppp.stppp.Rd |only
lgcp-1.3/lgcp/man/muEst.Rd | 51
lgcp-1.3/lgcp/man/multiply.list.Rd |only
lgcp-1.3/lgcp/man/my.KinhomAverage.Rd |only
lgcp-1.3/lgcp/man/my.ginhomAverage.Rd |only
lgcp-1.3/lgcp/man/neattable.Rd | 29
lgcp-1.3/lgcp/man/neigh2D.Rd | 33
lgcp-1.3/lgcp/man/nextStep.Rd | 16
lgcp-1.3/lgcp/man/nullAverage.Rd | 25
lgcp-1.3/lgcp/man/nullFunction.Rd | 20
lgcp-1.3/lgcp/man/numCases.Rd |only
lgcp-1.3/lgcp/man/osppp2latlon.Rd |only
lgcp-1.3/lgcp/man/osppp2merc.Rd |only
lgcp-1.3/lgcp/man/paramprec.Rd | 32
lgcp-1.3/lgcp/man/paramprecbase.Rd | 37
lgcp-1.3/lgcp/man/parautocorr.Rd |only
lgcp-1.3/lgcp/man/parsummary.Rd |only
lgcp-1.3/lgcp/man/plot.fromSPDF.Rd |only
lgcp-1.3/lgcp/man/plot.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/plot.lgcpAutocorr.Rd |only
lgcp-1.3/lgcp/man/plot.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/plot.lgcpQuantiles.Rd |only
lgcp-1.3/lgcp/man/plot.lgcpZmat.Rd |only
lgcp-1.3/lgcp/man/plot.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/plot.mcmcdiag.Rd |only
lgcp-1.3/lgcp/man/plot.mstppp.Rd |only
lgcp-1.3/lgcp/man/plot.stppp.Rd |only
lgcp-1.3/lgcp/man/plot.temporalAtRisk.Rd |only
lgcp-1.3/lgcp/man/plotExceed.Rd | 27
lgcp-1.3/lgcp/man/plotExceed.array.Rd |only
lgcp-1.3/lgcp/man/plotExceed.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/plotit.Rd |only
lgcp-1.3/lgcp/man/postcov.Rd |only
lgcp-1.3/lgcp/man/postcov.lgcpPredictAggregateSpatialPlusParameters.Rd |only
lgcp-1.3/lgcp/man/postcov.lgcpPredictMultitypeSpatialPlusParameters.Rd |only
lgcp-1.3/lgcp/man/postcov.lgcpPredictSpatialOnlyPlusParameters.Rd |only
lgcp-1.3/lgcp/man/postcov.lgcpPredictSpatioTemporalPlusParameters.Rd |only
lgcp-1.3/lgcp/man/print.dump2dir.Rd |only
lgcp-1.3/lgcp/man/print.fromFunction.Rd |only
lgcp-1.3/lgcp/man/print.fromSPDF.Rd |only
lgcp-1.3/lgcp/man/print.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/print.gridaverage.Rd |only
lgcp-1.3/lgcp/man/print.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/print.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/print.mcmc.Rd |only
lgcp-1.3/lgcp/man/print.mstppp.Rd |only
lgcp-1.3/lgcp/man/print.stapp.Rd |only
lgcp-1.3/lgcp/man/print.stppp.Rd |only
lgcp-1.3/lgcp/man/print.temporalAtRisk.Rd |only
lgcp-1.3/lgcp/man/priorpost.Rd |only
lgcp-1.3/lgcp/man/quantile.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/quantile.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/raster.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/rescale.mstppp.Rd |only
lgcp-1.3/lgcp/man/rescale.stppp.Rd |only
lgcp-1.3/lgcp/man/resetLoop.Rd | 16
lgcp-1.3/lgcp/man/rgauss.Rd | 53
lgcp-1.3/lgcp/man/roteffgain.Rd | 30
lgcp-1.3/lgcp/man/rotmat.Rd | 23
lgcp-1.3/lgcp/man/rr.Rd | 27
lgcp-1.3/lgcp/man/rr.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/samplePosterior.Rd |only
lgcp-1.3/lgcp/man/segProbs.Rd |only
lgcp-1.3/lgcp/man/seintens.Rd | 28
lgcp-1.3/lgcp/man/seintens.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/selectObsWindow.Rd | 32
lgcp-1.3/lgcp/man/selectObsWindow.default.Rd |only
lgcp-1.3/lgcp/man/selectObsWindow.stppp.Rd |only
lgcp-1.3/lgcp/man/serr.Rd | 28
lgcp-1.3/lgcp/man/serr.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/setTxtProgressBar2.Rd | 26
lgcp-1.3/lgcp/man/setoutput.Rd | 36
lgcp-1.3/lgcp/man/showGrid.Rd | 29
lgcp-1.3/lgcp/man/showGrid.default.Rd |only
lgcp-1.3/lgcp/man/showGrid.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/showGrid.stppp.Rd |only
lgcp-1.3/lgcp/man/smultiply.list.Rd |only
lgcp-1.3/lgcp/man/sparsebase.Rd | 22
lgcp-1.3/lgcp/man/spatialAtRisk.Rd | 150 +-
lgcp-1.3/lgcp/man/spatialAtRisk.SpatialGridDataFrame.Rd |only
lgcp-1.3/lgcp/man/spatialAtRisk.SpatialPolygonsDataFrame.Rd |only
lgcp-1.3/lgcp/man/spatialAtRisk.bivden.Rd |only
lgcp-1.3/lgcp/man/spatialAtRisk.default.Rd |only
lgcp-1.3/lgcp/man/spatialAtRisk.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/spatialAtRisk.function.Rd |only
lgcp-1.3/lgcp/man/spatialAtRisk.im.Rd |only
lgcp-1.3/lgcp/man/spatialAtRisk.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/spatialIntensities.Rd | 28
lgcp-1.3/lgcp/man/spatialIntensities.fromSPDF.Rd |only
lgcp-1.3/lgcp/man/spatialIntensities.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/spatialparsEst.Rd | 83 -
lgcp-1.3/lgcp/man/stGPrealisation.Rd |only
lgcp-1.3/lgcp/man/stapp.Rd | 24
lgcp-1.3/lgcp/man/stapp.SpatialPolygonsDataFrame.Rd |only
lgcp-1.3/lgcp/man/stapp.list.Rd |only
lgcp-1.3/lgcp/man/stppp.Rd | 35
lgcp-1.3/lgcp/man/stppp.list.Rd |only
lgcp-1.3/lgcp/man/stppp.ppp.Rd |only
lgcp-1.3/lgcp/man/summary.lgcpgrid.Rd |only
lgcp-1.3/lgcp/man/summary.mcmc.Rd |only
lgcp-1.3/lgcp/man/target.and.grad.AggregateSpatialPlusPars.Rd |only
lgcp-1.3/lgcp/man/target.and.grad.MultitypespatialPlusPars.Rd |only
lgcp-1.3/lgcp/man/target.and.grad.SpatioTemporalPlusPars.Rd |only
lgcp-1.3/lgcp/man/target.and.grad.spatial.Rd |only
lgcp-1.3/lgcp/man/target.and.grad.spatialPlusPars.Rd |only
lgcp-1.3/lgcp/man/target.and.grad.spatiotemporal.Rd |only
lgcp-1.3/lgcp/man/tempRaster.Rd |only
lgcp-1.3/lgcp/man/temporalAtRisk.Rd | 143 +-
lgcp-1.3/lgcp/man/temporalAtRisk.function.Rd |only
lgcp-1.3/lgcp/man/temporalAtRisk.numeric.Rd |only
lgcp-1.3/lgcp/man/textsummary.Rd |only
lgcp-1.3/lgcp/man/thetaEst.Rd | 84 -
lgcp-1.3/lgcp/man/toral.cov.mat.Rd |only
lgcp-1.3/lgcp/man/touchingowin.Rd |only
lgcp-1.3/lgcp/man/traceplots.Rd |only
lgcp-1.3/lgcp/man/transblack.Rd |only
lgcp-1.3/lgcp/man/transblue.Rd |only
lgcp-1.3/lgcp/man/transgreen.Rd |only
lgcp-1.3/lgcp/man/transred.Rd |only
lgcp-1.3/lgcp/man/txtProgressBar2.Rd | 44
lgcp-1.3/lgcp/man/updateAMCMC.Rd | 34
lgcp-1.3/lgcp/man/updateAMCMC.andrieuthomsh.Rd |only
lgcp-1.3/lgcp/man/updateAMCMC.constanth.Rd |only
lgcp-1.3/lgcp/man/varfield.Rd | 28
lgcp-1.3/lgcp/man/varfield.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/varfield.lgcpPredictINLA.Rd |only
lgcp-1.3/lgcp/man/window.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/xvals.Rd | 32
lgcp-1.3/lgcp/man/xvals.SpatialGridDataFrame.Rd |only
lgcp-1.3/lgcp/man/xvals.default.Rd |only
lgcp-1.3/lgcp/man/xvals.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/xvals.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/yvals.Rd | 32
lgcp-1.3/lgcp/man/yvals.SpatialGridDataFrame.Rd |only
lgcp-1.3/lgcp/man/yvals.default.Rd |only
lgcp-1.3/lgcp/man/yvals.fromXYZ.Rd |only
lgcp-1.3/lgcp/man/yvals.lgcpPredict.Rd |only
lgcp-1.3/lgcp/man/zvals.Rd | 32
lgcp-1.3/lgcp/man/zvals.SpatialGridDataFrame.Rd |only
lgcp-1.3/lgcp/man/zvals.default.Rd |only
lgcp-1.3/lgcp/man/zvals.fromXYZ.Rd |only
575 files changed, 5127 insertions(+), 2288 deletions(-)
Title: Phylogenetic Tools for comparative biology (and other things)
Diff between phytools versions 0.2-70 dated 2013-05-22 and 0.2-80 dated 2013-05-31
Description: phytools provides various functions for phylogenetic
analysis, mostly relevant to comparative biology.
Author: Liam J. Revell
Maintainer: Liam J. Revell
phytools-0.2-70/phytools/R/rescaleSimmap.R |only
phytools-0.2-80/phytools/DESCRIPTION | 10 -
phytools-0.2-80/phytools/MD5 | 29 +--
phytools-0.2-80/phytools/NAMESPACE | 1
phytools-0.2-80/phytools/R/contMap.R | 12 +
phytools-0.2-80/phytools/R/densityMap.R | 78 ++++++---
phytools-0.2-80/phytools/R/make.simmap.R | 4
phytools-0.2-80/phytools/R/plotBranchbyTrait.R | 27 ++-
phytools-0.2-80/phytools/R/plotSimmap.R | 198 ++++++++++++++++---------
phytools-0.2-80/phytools/R/plotTree.R | 8 -
phytools-0.2-80/phytools/R/utilities.R | 26 +--
phytools-0.2-80/phytools/data |only
phytools-0.2-80/phytools/man/add.color.bar.Rd | 9 -
phytools-0.2-80/phytools/man/anoletree.Rd |only
phytools-0.2-80/phytools/man/contMap.Rd | 3
phytools-0.2-80/phytools/man/densityMap.Rd | 3
phytools-0.2-80/phytools/man/plotSimmap.Rd | 4
17 files changed, 260 insertions(+), 152 deletions(-)
Title: Simulates Correlated Multinomial Responses
Diff between SimCorMultRes versions 1.0 dated 2012-11-12 and 1.1 dated 2013-05-31
Description: Simulates correlated multinomial responses by utilizing
threshold approaches under a marginal cumulative link model, a
marginal continuation ratio model or a marginal baseline
category logit model.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
SimCorMultRes-1.0/SimCorMultRes/SimCorMultRes_1.0.tar.gz |only
SimCorMultRes-1.0/SimCorMultRes/SimCorMultRes_1.0.zip |only
SimCorMultRes-1.1/SimCorMultRes/DESCRIPTION | 21 ++--
SimCorMultRes-1.1/SimCorMultRes/MD5 | 26 +++--
SimCorMultRes-1.1/SimCorMultRes/NAMESPACE | 2
SimCorMultRes-1.1/SimCorMultRes/NEWS |only
SimCorMultRes-1.1/SimCorMultRes/R/rmult.bcl.R | 6 -
SimCorMultRes-1.1/SimCorMultRes/R/rmult.clm.R | 10 +-
SimCorMultRes-1.1/SimCorMultRes/R/rmult.crm.R |only
SimCorMultRes-1.1/SimCorMultRes/R/rnorta.R | 13 --
SimCorMultRes-1.1/SimCorMultRes/R/rsmvnorm.R |only
SimCorMultRes-1.1/SimCorMultRes/inst |only
SimCorMultRes-1.1/SimCorMultRes/man/SimCorMultRes-package.Rd | 18 ++--
SimCorMultRes-1.1/SimCorMultRes/man/rmult.bcl.Rd | 44 +++++-----
SimCorMultRes-1.1/SimCorMultRes/man/rmult.clm.Rd | 48 +++++------
SimCorMultRes-1.1/SimCorMultRes/man/rmult.crm.Rd |only
SimCorMultRes-1.1/SimCorMultRes/man/rnorta.Rd | 14 +--
SimCorMultRes-1.1/SimCorMultRes/man/rsmvnorm.Rd |only
18 files changed, 101 insertions(+), 101 deletions(-)
Title: Korean NLP Package
Diff between KoNLP versions 0.76.8 dated 2012-11-12 and 0.76.9 dated 2013-05-31
Description: Korean language processing package. Morphological
analyzer, POS tagger, Keystroke converter, Hangul automata,
Concordance, Mutual Information..
Author: Heewon Jeon
Maintainer: Heewon Jeon
DESCRIPTION | 16 +++++++++-------
MD5 | 34 +++++++++++++++++++---------------
NAMESPACE | 6 ++++++
NEWS | 7 +++++++
R/Concordances.R |only
R/koAnalyzerRun.R | 4 ++++
R/manageDic.R | 17 +++++++++++++----
R/onLoad.R | 18 ++++++++++++++----
man/MorphAnalyzer.Rd | 4 ++++
man/SimplePos09.Rd | 4 ++++
man/SimplePos22.Rd | 4 ++++
man/backupUsrDic.Rd | 4 +++-
man/concordance_file.Rd |only
man/concordance_str.Rd |only
man/extractNoun.Rd | 4 ++++
man/mergeUserDic.Rd | 4 +++-
man/mutualinformation.Rd |only
man/reloadAllDic.Rd | 4 +++-
man/restoreUsrDic.Rd | 4 +++-
man/useSejongDic.Rd | 3 +++
20 files changed, 103 insertions(+), 34 deletions(-)
Title: sybil - Efficient Constrained Based Modelling in R
Diff between sybil versions 1.1.14 dated 2013-04-15 and 1.2.0 dated 2013-05-31
Description: The package sybil is a Systems Biology Library for R,
implementing algorithms for constraint based analyses of
metabolic networks (e.g. flux-balance analysis (FBA),
minimization of metabolic adjustment (MOMA), regulatory on/off
minimization (ROOM), robustness analysis and flux variability
analysis).
Author: Gabriel Gelius-Dietrich [aut, cre], C. Jonathan Fritzemeier
[ctb], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb],
Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb]
Maintainer: Gabriel Gelius-Dietrich
DESCRIPTION | 40 ++++++-------
MD5 | 73 ++++++++++++-----------
R/checkEmptyField.R |only
R/doubleGeneDel.R | 11 +++
R/generateWT.R | 14 ++++
R/generics.R | 4 +
R/makeLPcompatible.R |only
R/modelorgClass.R | 79 +++++++++++++++++++++++--
R/optObj_clpAPIClass.R | 15 ++++
R/optObj_cplexAPIClass.R | 31 +++++++---
R/optObj_glpkAPIClass.R | 32 +++++++++-
R/optObj_lpSolveAPIClass.R | 20 +++++-
R/promptSysBiolAlg.R | 2
R/readTSVmod.R | 126 ++++++++++++++++++++++++++++++++++++++++-
R/settings.R | 4 +
R/sysBiolAlgClass.R | 7 +-
R/sysBiolAlg_fbaClass.R | 33 ++++++++++
R/sysBiolAlg_fvClass.R | 41 ++++++++++++-
R/sysBiolAlg_lmomaClass.R | 53 +++++++++++++++++
R/sysBiolAlg_momaClass.R | 32 ++++++++++
R/sysBiolAlg_mtfClass.R | 44 ++++++++++++++
R/sysBiolAlg_roomClass.R | 41 +++++++++++++
R/zzz.R | 1
inst/NEWS.Rd | 39 ++++++++++++
inst/doc/sybil.pdf |binary
man/SYBIL_SETTINGS.Rd | 7 ++
man/addRowsToProb-methods.Rd | 19 +++---
man/changeUptake-methods.Rd |only
man/initProb-methods.Rd | 2
man/loadLPprob-methods.Rd | 31 ++++++++--
man/printMetabolite-methods.Rd | 6 +
man/readTSVmod.Rd | 2
man/sysBiolAlg-class.Rd | 12 +++
man/sysBiolAlg_fba-class.Rd | 16 +++++
man/sysBiolAlg_fv-class.Rd | 18 +++++
man/sysBiolAlg_lmoma-class.Rd | 16 +++++
man/sysBiolAlg_moma-class.Rd | 16 +++++
man/sysBiolAlg_mtf-class.Rd | 16 +++++
man/sysBiolAlg_room-class.Rd | 16 +++++
39 files changed, 818 insertions(+), 101 deletions(-)
Title: geotopbricks: Analyzes raster maps as input/output files from
the Hydrological Distributed Model GEOtop
Diff between geotopbricks versions 1.3.3 dated 2013-05-27 and 1.3.4 dated 2013-05-31
Description: geotopbricks: Analyzes raster maps and other information
as input/output files from the Hydrological Distributed Model
GEOtop. It contains functions and methods to import maps and
other keywords from geotop.inpts file. Any information about
the GEOtop Distributed Hydrological Model is available on
www.geotop.org. The examples are tested on two simulation cases
run with GEOtop built 1.225-9 mostly developed by Stefano
Endrizzi. Bugs/comments/questions/collaboration of any kind are
warmly welcomed.
Author: Emanuele Cordano, Daniele Andreis, Fabio Zottele
Maintainer: Emanuele Cordano
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/create.geotop.meteo.file.R | 5 +++--
R/geotopbricks-package.R | 4 ++--
man/geotopbricks-package.Rd | 4 ++--
5 files changed, 15 insertions(+), 14 deletions(-)