Title: Package for the analysis of lake physics
Diff between rLakeAnalyzer versions 1.0 dated 2013-09-08 and 1.3 dated 2014-02-07
Description: Standardized methods for calculating common important derived physical features of lakes including water density based based on temperature, thermal layers, thermocline depth, lake number, Wedderburn number, Schmidt stability and others.
Author: Luke Winslow, Jordan Read, Richard Woolway, Jennifer Brentrup, Jake Zwart
Maintainer: Luke Winslow
DESCRIPTION | 8 +-
MD5 | 30 +++++++---
NAMESPACE | 4 +
R/buoyancy.freq.R |only
R/meta.depths.R | 8 +-
R/thermo.depth.R | 22 +++++--
R/timeseries.functions.R | 100 ++++++++++++++++++++++++++++++++++--
R/water.density.R | 5 +
R/wtr.plotting.R |only
inst/extdata/Sparkling.daily.wnd |only
inst/extdata/Sparkling.daily.wtr |only
inst/extdata/gFileOpen.m |only
inst/extdata/gFileSave.m |only
inst/extdata/gPivot.m |only
inst/extdata/misc.asv |only
inst/extdata/misc.m |only
inst/extdata/timeseriesaggregator.m |only
man/buoyancy.freq.Rd |only
man/thermo.depth.Rd | 5 +
man/ts.buoyancy.freq.Rd |only
man/ts.meta.depths.Rd | 10 ++-
man/ts.wedderburn.number.Rd |only
man/wtr.heat.map.Rd |only
23 files changed, 158 insertions(+), 34 deletions(-)
Title: Plugin de R-Commander para el manual EACSPIR
Diff between RcmdrPlugin.EACSPIR versions 0.2 dated 2013-10-30 and 0.2-1 dated 2014-02-07
More information about RcmdrPlugin.EACSPIR at CRAN
Description: Este paquete proporciona una interfaz grafica de usuario (GUI) para algunos de los procedimientos estadisticos detallados en un curso de 'Estadistica aplicada a las Ciencias Sociales mediante el programa informatico R' (EACSPIR). LA GUI se ha desarrollado como un Plugin del programa R-Commander.
Author: Maribel Pero
Maintainer: David Leiva
DESCRIPTION | 15 +--
MD5 | 26 +++---
R/RcmdrPlugin.EACSPIR.R | 155 +++++++++++++++++++++----------------
data/fobia.RData |binary
man/RcmdrPlugin.EACSPIR-package.Rd | 15 +--
man/alumnadoEST.rd | 47 ++++++-----
man/depresion.Rd | 14 ++-
man/evalBurnout.rd | 65 ++++++++-------
man/fobia.rd | 26 +++---
man/hoteles.rd | 45 +++++-----
man/memoriaVisual.rd | 16 ++-
man/prevencionRL.rd | 51 ++++++------
man/riesgosPS.rd | 32 ++++---
man/testBarcelona.rd | 37 ++++----
14 files changed, 301 insertions(+), 243 deletions(-)
Permanent link
Title: SYNCSA - Analysis of functional and phylogenetic patterns in
metacommunities.
Diff between SYNCSA versions 1.3.1 dated 2013-06-03 and 1.3.2 dated 2014-02-07
Description: Analysis of metacommunities based on functional traits and phylogeny of the community components. The functions that are offered here implement for the R environment methods that have been available in the SYNCSA application written in C++ (by Valerio Pillar, available at http://ecoqua.ecologia.ufrgs.br/ecoqua/SYNCSA.html).
Author: Vanderlei Julio Debastiani
Maintainer: Vanderlei Julio Debastiani
DESCRIPTION | 17 ++++++-----------
MD5 | 20 +++++++++++++-------
NAMESPACE | 3 ++-
R/ProgressBAR.R |only
R/belonging.R |only
R/optimal.R | 12 +++++++++++-
R/rao.diversity.R |only
man/ProgressBAR.Rd |only
man/SYNCSA-package.Rd | 4 ++--
man/belonging.Rd |only
man/matrix.p.Rd | 2 +-
man/optimal.Rd | 3 ++-
man/rao.diversity.Rd |only
man/syncsa.Rd | 2 +-
14 files changed, 38 insertions(+), 25 deletions(-)
Title: Robust Estimation for Compositional Data.
Diff between robCompositions versions 1.6.4 dated 2013-11-26 and 1.7.0 dated 2014-02-07
More information about robCompositions at CRAN
Description: The package includes methods for imputation
of compositional data including robust methods, methods to impute rounded zeros,
(robust) outlier detection for compositional data,
(robust) principal component
analysis for compositional data, (robust) factor analysis for compositional
data, (robust) discriminant analysis for compositional data (Fisher rule), robust regression with compositional predictors and (robust)
Anderson-Darling normality tests
for compositional data as well as popular log-ratio transformations (addLR, cenLR, isomLR,
and their inverse transformations).
In addition, visualisation and diagnostic tools are implemented as well as high and low-level plot functions for the
ternary diagram.
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ
robCompositions-1.6.4/robCompositions/inst/doc/robCompositions-overview.R |only
robCompositions-1.7.0/robCompositions/DESCRIPTION | 11
robCompositions-1.7.0/robCompositions/MD5 | 34
robCompositions-1.7.0/robCompositions/NAMESPACE | 4
robCompositions-1.7.0/robCompositions/NEWS | 93
robCompositions-1.7.0/robCompositions/R/impCoda.R | 624 +-
robCompositions-1.7.0/robCompositions/R/impRZilr.R | 2133 +++++-----
robCompositions-1.7.0/robCompositions/R/lmCoDaX.R | 144
robCompositions-1.7.0/robCompositions/build |only
robCompositions-1.7.0/robCompositions/inst/doc/imputation.R | 778 +--
robCompositions-1.7.0/robCompositions/inst/doc/imputation.Rnw | 2014 ++++-----
robCompositions-1.7.0/robCompositions/inst/doc/imputation.pdf |binary
robCompositions-1.7.0/robCompositions/man/constSum.Rd | 74
robCompositions-1.7.0/robCompositions/man/impCoda.Rd | 138
robCompositions-1.7.0/robCompositions/man/impRZalr.Rd | 92
robCompositions-1.7.0/robCompositions/man/impRZilr.Rd | 162
robCompositions-1.7.0/robCompositions/man/ternaryDiag.Rd | 104
robCompositions-1.7.0/robCompositions/tests/rz.R | 34
robCompositions-1.7.0/robCompositions/vignettes/imputation.Rnw | 2014 ++++-----
19 files changed, 4403 insertions(+), 4050 deletions(-)
Permanent link
Title: Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Diff between mvMORPH versions 1.0 dated 2013-10-08 and 1.0.1 dated 2014-02-07
Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees
Author: Julien Clavel, with contributions from Aaron King, and Emmanuel Paradis
Maintainer: Julien Clavel
DESCRIPTION | 8 ++--
MD5 | 18 +++++-----
R/mvBM.r | 16 +++++----
R/mvEB.r | 5 +--
R/mvOUC.r | 95 +++++++++++++++++++++++++++++++++++++++++++--------------
R/mvSHIFT.r | 7 ++--
man/mvBM.Rd | 6 +--
man/mvEB.Rd | 2 -
man/mvOU.Rd | 8 +++-
man/mvSHIFT.rd | 8 ++--
10 files changed, 114 insertions(+), 59 deletions(-)
Title: Maximally Selected Rank Statistics
Diff between maxstat versions 0.7-18 dated 2013-09-02 and 0.7-20 dated 2014-02-07
Description: Maximally selected rank statistics with
several p-value approximations.
Author: Torsten Hothorn
Maintainer: Torsten Hothorn
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++-----
build |only
data/treepipit.rda |binary
inst/NEWS | 8 ++++++--
inst/doc/maxstat.pdf |binary
src/maxstatpermdist.c | 3 ++-
7 files changed, 18 insertions(+), 12 deletions(-)
Title: nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Diff between nat versions 1.0 dated 2014-02-04 and 1.0.1 dated 2014-02-07
Description: This package is a reboot of the AnalysisSuite
(https://github.com/jefferis/AnalysisSuite) bundle of R code that I have
been using for a number of years to analyse and visualise 3D biological
image data, especially traced neurons. AnalysisSuite is most easily
installed using the nat.as package presently available at
https://github.com/jefferis/nat.as. The nat package is considerably cleaner
but currently provides only a subset of the full functionality of nat.as /
AnalysisSuite. nat can read 3D images and surfaces in Amira formats. Traced
neurons can be imported from SWC and Amira SkeletonGraph format. These data
can then be visualised in 3D via rgl, manipulated including applying
calculated registrations, e.g. using the CMTK registration suite, and
analysed. There package also has a simple representation for neurons that
have been subjected to a 3D skeletonisation but not formally traced; this
allows morphological comparison between neurons including searches and
clustering.
Author: Greg Jefferis with contributions from Ashley Manton
Maintainer: Greg Jefferis
DESCRIPTION | 28 ++++++++++++++--------------
MD5 | 12 ++++++------
NEWS | 4 ++++
R/cmtk.R | 23 ++++++++++++-----------
R/zzz.R | 5 ++---
README.md | 30 +++++++++++++++++++++++++++---
man/cmtk.bindir.Rd | 19 ++++++++++++++-----
7 files changed, 79 insertions(+), 42 deletions(-)
Title: A platform for the study of macroecology of life history traits
Diff between rangeMapper versions 0.2-4 dated 2013-07-18 and 0.2-6 dated 2014-02-07
Description: A package to manipulate species range (extent-of-occurrence) maps, mainly tools
for easy generation of species richness and (life-history) traits maps.
Author: Mihai Valcu
Maintainer: Mihai Valcu
DESCRIPTION | 16
MD5 | 51
NAMESPACE | 208 +-
NEWS | 4
R/AllClasses.R | 540 +++---
R/MapFetch-methods.R | 4
R/MapRemove-methods.R | 20
R/MapSave-methods.R | 2
R/assemblageFetch-methods.R | 2
R/bioSave-methods.R | 12
README.md |only
inst/GUI/bootstrap-switch.html | 1326 ++++++++--------
inst/GUI/functions.R | 310 +--
inst/GUI/server.R | 154 -
inst/GUI/ui.R | 482 ++---
inst/extdata/etopo1/data_source.txt | 2
inst/extdata/wrens/vector/Troglodytes_beani.qpj | 2
inst/extdata/wrens/vector/Troglodytes_brunneicollis.qpj | 2
inst/extdata/wrens/vector/Troglodytes_musculus.qpj | 2
man/00_rangeMap-class.Rd | 140 -
man/03_rangeFiles.Rd | 126 -
man/07_vertices.Rd | 136 -
man/08_bioSave.Rd | 207 +-
man/09_SpatialPixelsRangeMap-class.Rd | 80
man/10_rangeMapSave.Rd | 23
man/12_rangeMapRemove.Rd | 50
man/99_RMQuery.Rd | 102 -
27 files changed, 2029 insertions(+), 1974 deletions(-)
Title: Calculations and visualisations related to Geometric
Morphometrics
Diff between Morpho versions 2.0 dated 2014-02-06 and 2.0.1 dated 2014-02-07
Description: A toolset for Geometric Morphometrics and mesh processing. This
includes (among other stuff) mesh deformations based on reference points,
permutation tests, detection of outliers, processing of sliding
semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager
Maintainer: Stefan Schlager
DESCRIPTION | 16 ++++++++--------
MD5 | 16 ++++++++--------
R/Atlas.r | 26 +++++++++++++++++++-------
R/Morpho-package.R | 4 ++--
R/place.patch.r | 46 ++++++++++++++++++++++++++++++++++++----------
inst/NEWS.Rd | 18 +++++++++++++-----
man/Morpho-package.Rd | 4 ++--
man/createAtlas.Rd | 25 ++++++++++++++++++-------
man/placePatch.Rd | 17 ++++++++++++-----
9 files changed, 118 insertions(+), 54 deletions(-)
Title: Random variate generator for the GIG distribution
Diff between GIGrvg versions 0.1 dated 2013-05-27 and 0.2 dated 2014-02-07
Description: Random variate generator for the GIG distribution
Author: Josef Leydold and Wolfgang Hormann
Maintainer: Josef Leydold
DESCRIPTION | 8 ++++----
MD5 | 9 ++++++---
NEWS |only
inst |only
man/GIGrvg-package.Rd | 4 ++--
src/GIGrvg.h | 11 +++++++++++
src/GIGrvg_init.c |only
7 files changed, 23 insertions(+), 9 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.8-15 dated 2014-02-06 and 0.8-16 dated 2014-02-07
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.3) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut],
Tim Keitt [aut],
Barry Rowlingson [aut],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [ctb]
Maintainer: Roger Bivand
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/Class-CRSx.R | 6 +++---
inst/doc/OGR_shape_encoding.pdf |binary
man/CRS-class.Rd | 7 +++++++
src/init.c | 2 +-
src/projectit.cpp | 11 +++++++----
src/rgdal.h | 2 +-
8 files changed, 30 insertions(+), 20 deletions(-)
Title: Statistical experiments on batch computing clusters.
Diff between BatchExperiments versions 1.0-968 dated 2013-04-10 and 1.1 dated 2014-02-07
More information about BatchExperiments at CRAN
Description: Extends the BatchJobs package to run statistical experiments on
batch computing clusters. For further details see the project web page.
Author: Bernd Bischl
Maintainer: Michel Lang
BatchExperiments-1.0-968/BatchExperiments/R/getJobIdsGrouped.R |only
BatchExperiments-1.0-968/BatchExperiments/inst/tests/runit_files |only
BatchExperiments-1.1/BatchExperiments/DESCRIPTION | 35 +-
BatchExperiments-1.1/BatchExperiments/LICENSE |only
BatchExperiments-1.1/BatchExperiments/MD5 | 120 ++++------
BatchExperiments-1.1/BatchExperiments/NAMESPACE | 32 +-
BatchExperiments-1.1/BatchExperiments/NEWS | 5
BatchExperiments-1.1/BatchExperiments/R/Algorithm.R | 4
BatchExperiments-1.1/BatchExperiments/R/Experiment.R | 4
BatchExperiments-1.1/BatchExperiments/R/ExperimentRegistry.R | 28 +-
BatchExperiments-1.1/BatchExperiments/R/Problem.R | 4
BatchExperiments-1.1/BatchExperiments/R/addExperiments.R | 15 -
BatchExperiments-1.1/BatchExperiments/R/database.R | 18 -
BatchExperiments-1.1/BatchExperiments/R/designs.R | 5
BatchExperiments-1.1/BatchExperiments/R/findExperiments.R | 10
BatchExperiments-1.1/BatchExperiments/R/getAlgorithm.R | 2
BatchExperiments-1.1/BatchExperiments/R/getAlgorithmIds.R | 9
BatchExperiments-1.1/BatchExperiments/R/getIndex.R | 23 +
BatchExperiments-1.1/BatchExperiments/R/getProblem.R | 2
BatchExperiments-1.1/BatchExperiments/R/getProblemIds.R | 9
BatchExperiments-1.1/BatchExperiments/R/reduceResultsExperiments.R | 51 ++--
BatchExperiments-1.1/BatchExperiments/R/removeAlgorithm.R | 2
BatchExperiments-1.1/BatchExperiments/R/removeProblem.R | 2
BatchExperiments-1.1/BatchExperiments/R/zzz.R | 13 +
BatchExperiments-1.1/BatchExperiments/inst/tests/helpers.R | 54 ++++
BatchExperiments-1.1/BatchExperiments/inst/tests/test_addExperiments.R | 7
BatchExperiments-1.1/BatchExperiments/inst/tests/test_designs.R | 68 ++---
BatchExperiments-1.1/BatchExperiments/inst/tests/test_getJobInfo.R | 3
BatchExperiments-1.1/BatchExperiments/inst/tests/test_ids.R | 1
BatchExperiments-1.1/BatchExperiments/inst/tests/test_reduceResults.R | 42 +++
BatchExperiments-1.1/BatchExperiments/inst/tests/test_reduceResultsExperimentsParallel.R | 31 +-
BatchExperiments-1.1/BatchExperiments/inst/tests/test_remove.R | 3
BatchExperiments-1.1/BatchExperiments/inst/tests/test_testJob.R | 17 -
BatchExperiments-1.1/BatchExperiments/inst/tests/test_trafo_results.R | 10
BatchExperiments-1.1/BatchExperiments/inst/tests/test_zzz_cleanup.R |only
BatchExperiments-1.1/BatchExperiments/man/BatchExperiments.Rd |only
BatchExperiments-1.1/BatchExperiments/man/ExperimentJob.Rd | 32 +-
BatchExperiments-1.1/BatchExperiments/man/addAlgorithm.Rd | 8
BatchExperiments-1.1/BatchExperiments/man/addExperiments.Rd | 19 -
BatchExperiments-1.1/BatchExperiments/man/addProblem.Rd | 10
BatchExperiments-1.1/BatchExperiments/man/findExperiments.Rd | 20 +
BatchExperiments-1.1/BatchExperiments/man/generateProblemInstance.Rd | 6
BatchExperiments-1.1/BatchExperiments/man/getAlgorithm.Rd | 8
BatchExperiments-1.1/BatchExperiments/man/getAlgorithmIds.Rd | 9
BatchExperiments-1.1/BatchExperiments/man/getIndex.Rd | 17 -
BatchExperiments-1.1/BatchExperiments/man/getJobs.ExperimentRegistry.Rd | 8
BatchExperiments-1.1/BatchExperiments/man/getProblem.Rd | 6
BatchExperiments-1.1/BatchExperiments/man/getProblemIds.Rd | 9
BatchExperiments-1.1/BatchExperiments/man/getResultVars.Rd | 6
BatchExperiments-1.1/BatchExperiments/man/makeDesign.Rd | 25 +-
BatchExperiments-1.1/BatchExperiments/man/makeExperimentRegistry.Rd | 40 ++-
BatchExperiments-1.1/BatchExperiments/man/reduceResultsExperiments.Rd | 37 +--
BatchExperiments-1.1/BatchExperiments/man/reduceResultsExperimentsParallel.Rd | 23 -
BatchExperiments-1.1/BatchExperiments/man/removeAlgorithm.Rd | 8
BatchExperiments-1.1/BatchExperiments/man/removeExperiments.Rd | 12 -
BatchExperiments-1.1/BatchExperiments/man/removeProblem.Rd | 8
BatchExperiments-1.1/BatchExperiments/man/summarizeExperiments.Rd | 23 -
57 files changed, 564 insertions(+), 399 deletions(-)
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-23 0.1.1
2013-04-06 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-07 0.2
2010-05-11 0.1
Title: R package to detect character encoding
Diff between Ruchardet versions 0.0-2 dated 2013-12-19 and 0.0-3 dated 2014-02-07
Description: R port of 'universalchardet', that is the encoding detector
library of Mozilla.
Author: Heewon Jeon
Maintainer: Heewon Jeon
DESCRIPTION | 9 +++++----
MD5 | 6 +++---
NAMESPACE | 1 +
inst/NEWS | 5 +++++
4 files changed, 14 insertions(+), 7 deletions(-)
More information about networkDynamicData at CRAN
Permanent link