Title: Causal Inference of QTL Networks
Diff between qtlnet versions 1.3.5 dated 2013-09-16 and 1.3.6 dated 2014-03-13
Description: Functions to Simultaneously Infer Causal Graphs and Genetic Architecture
Author: Elias Chaibub Neto
Maintainer: Brian S. Yandell
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/qdg.R | 2 +-
inst/doc/qtlnet.pdf |binary
4 files changed, 8 insertions(+), 8 deletions(-)
Title: Linear Latent Variable Models
Diff between lava versions 1.2.4 dated 2013-12-17 and 1.2.5 dated 2014-03-13
Description: Estimation and simulation of latent variable models
Author: Klaus K. Holst
Maintainer: Klaus K. Holst
lava-1.2.4/lava/CHANGES |only
lava-1.2.5/lava/DESCRIPTION | 15
lava-1.2.5/lava/INDEX |only
lava-1.2.5/lava/MD5 | 161 +++---
lava-1.2.5/lava/NAMESPACE | 47 +
lava-1.2.5/lava/NEWS | 34 +
lava-1.2.5/lava/R/Objective.R | 28 +
lava-1.2.5/lava/R/addhook.R | 16
lava-1.2.5/lava/R/categorical.R |only
lava-1.2.5/lava/R/cluster.hook.R | 2
lava-1.2.5/lava/R/coef.R | 110 ++--
lava-1.2.5/lava/R/confint.R | 2
lava-1.2.5/lava/R/constrain.R | 95 +--
lava-1.2.5/lava/R/correlation.R | 2
lava-1.2.5/lava/R/deriv.R | 25
lava-1.2.5/lava/R/distribution.R | 14
lava-1.2.5/lava/R/estimate.R | 56 +-
lava-1.2.5/lava/R/estimate.default.R | 127 +++-
lava-1.2.5/lava/R/estimate.multigroup.R | 20
lava-1.2.5/lava/R/eventTime.R | 106 ++--
lava-1.2.5/lava/R/fix.R | 55 +-
lava-1.2.5/lava/R/fixsome.R | 177 +++---
lava-1.2.5/lava/R/functional.R | 58 +-
lava-1.2.5/lava/R/glmest.R | 2
lava-1.2.5/lava/R/gof.R | 122 ++++
lava-1.2.5/lava/R/iid.R | 97 ++-
lava-1.2.5/lava/R/index.sem.R | 3
lava-1.2.5/lava/R/information.R | 9
lava-1.2.5/lava/R/kill.R | 12
lava-1.2.5/lava/R/labels.R | 4
lava-1.2.5/lava/R/lava-package.R | 30 -
lava-1.2.5/lava/R/lisrel.R | 4
lava-1.2.5/lava/R/logLik.R | 24
lava-1.2.5/lava/R/lvm.R | 19
lava-1.2.5/lava/R/matrices.R | 35 -
lava-1.2.5/lava/R/merge.R | 68 ++
lava-1.2.5/lava/R/missingMLE.R | 15
lava-1.2.5/lava/R/modelPar.R | 17
lava-1.2.5/lava/R/modelVar.R | 2
lava-1.2.5/lava/R/modelsearch.R | 15
lava-1.2.5/lava/R/moments.R | 2
lava-1.2.5/lava/R/multigroup.R | 19
lava-1.2.5/lava/R/multinomial.R |only
lava-1.2.5/lava/R/normal.R |only
lava-1.2.5/lava/R/onload.R | 4
lava-1.2.5/lava/R/optims.R | 53 +-
lava-1.2.5/lava/R/ordinal.R |only
lava-1.2.5/lava/R/ordreg.R |only
lava-1.2.5/lava/R/parameter.R | 32 -
lava-1.2.5/lava/R/parpos.R | 5
lava-1.2.5/lava/R/pars.R | 11
lava-1.2.5/lava/R/pcor.R |only
lava-1.2.5/lava/R/plot.R | 17
lava-1.2.5/lava/R/predict.R | 34 -
lava-1.2.5/lava/R/print.R | 5
lava-1.2.5/lava/R/profile.R | 14
lava-1.2.5/lava/R/regression.R | 36 -
lava-1.2.5/lava/R/score.R | 52 +-
lava-1.2.5/lava/R/sim.R | 622 ++++++++++++------------
lava-1.2.5/lava/R/startvalues.R | 99 ++-
lava-1.2.5/lava/R/summary.R | 14
lava-1.2.5/lava/R/transform.R | 26 -
lava-1.2.5/lava/R/utils.R | 10
lava-1.2.5/lava/R/vcov.R | 2
lava-1.2.5/lava/R/zconfband.R | 119 +++-
lava-1.2.5/lava/R/zmypal.R | 12
lava-1.2.5/lava/R/zplotConf.R | 539 +++++++++-----------
lava-1.2.5/lava/inst/CITATION | 10
lava-1.2.5/lava/inst/doc/reference.pdf |binary
lava-1.2.5/lava/man/confband.Rd | 12
lava-1.2.5/lava/man/confint.lvmfit.Rd | 2
lava-1.2.5/lava/man/estimate.default.Rd | 54 +-
lava-1.2.5/lava/man/estimate.lvm.Rd | 4
lava-1.2.5/lava/man/eventTime.Rd | 1
lava-1.2.5/lava/man/gof.Rd | 12
lava-1.2.5/lava/man/internal.Rd | 5
lava-1.2.5/lava/man/lava.options.Rd | 2
lava-1.2.5/lava/man/missingdata.Rd | 18
lava-1.2.5/lava/man/multinomial.Rd |only
lava-1.2.5/lava/man/ordreg.Rd |only
lava-1.2.5/lava/man/plot.lvm.Rd | 17
lava-1.2.5/lava/man/plotConf.Rd | 12
lava-1.2.5/lava/man/sim.Rd | 30 +
lava-1.2.5/lava/man/timedep.Rd | 11
lava-1.2.5/lava/tests/testthat/test-constrain.R | 87 ++-
lava-1.2.5/lava/tests/testthat/test-effects.R |only
lava-1.2.5/lava/tests/testthat/test-inference.R |only
lava-1.2.5/lava/tests/testthat/test-model.R |only
88 files changed, 2234 insertions(+), 1398 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-11 1.0
Title: Control the number of threads on BLAS for R
Diff between RhpcBLASctl versions 0.14-71 dated 2014-03-12 and 0.14-72 dated 2014-03-13
Description: Control the number of threads on BLAS(Aka GotoBLAS, ACML and MKL).
--
GotoBLAS(generic) binary for Windows i386 http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x86/KATMAI/Rblas.dll
GotoBLAS(generic) binary for Windows x64 http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x64/PRESCOTT/Rblas.dll
Author: Junji Nakano
Maintainer: Ei-ji Nakama
ChangeLog | 3
DESCRIPTION | 8
MD5 | 13
cleanup | 1
configure | 2146 +++++++++++++++++++++++++++++++++++++++++++++++++++-----
configure.ac | 9
src/blasctl.c | 60 -
src/config.h.in |only
8 files changed, 2007 insertions(+), 233 deletions(-)
Title: An R package for High-Performance Computing
Diff between Rhpc versions 0.14-71 dated 2014-03-12 and 0.14-72 dated 2014-03-13
Description: Rhpc_lapply, Rhpc_lapplyLB and Rhpc_worker_call using MPI provides better HPC environment on R(works fast on HPC).
maybe start from the Rhpc batch command is better(faster).
Author: Junji Nakano
Maintainer: Ei-ji Nakama
ChangeLog | 3
DESCRIPTION | 8
MD5 | 19
cleanup | 1
configure | 2122 +++++++++++++++++++++++++++++++++++++++++++-----
configure.ac | 5
src/RhpcMPI.c | 3
src/RhpcSerialize.c | 2
src/common/Rhpc.h | 13
src/common/config.h.in |only
src/worker/RhpcWorker.c | 4
11 files changed, 1974 insertions(+), 206 deletions(-)
Title: Basic functions for supporting an implementation of best-worst
scaling
Diff between support.BWS versions 0.1-0 dated 2013-05-22 and 0.1-1 dated 2014-03-13
Description: This package provides three basic functions that support an implementation of object case (Case 1) best-worst scaling: one for converting a two-level orthogonal main-effect design/balanced incomplete block design into questions; one for creating a data set suitable for analysis; and one for calculating count-based scores.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki
DESCRIPTION | 15 +++++----------
MD5 | 11 ++++++++---
NEWS |only
R/bws.dataset.R | 9 ++++++++-
data |only
man/bws.dataset.Rd | 16 +++++++++++-----
man/fruit.Rd |only
man/mfa.Rd |only
8 files changed, 32 insertions(+), 19 deletions(-)
Title: Basic functions for supporting an implementation of choice
experiments
Diff between support.CEs versions 0.3-0 dated 2012-11-08 and 0.3-1 dated 2014-03-13
Description: The support.CEs package provides seven basic functions that support an implementation of choice experiments.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki
DESCRIPTION | 12 +-
MD5 | 36 ++++----
NEWS | 11 ++
R/Lma.design.R | 70 +++++++++------
R/gofm.R | 51 +++++++----
R/make.dataset.R | 43 ++++++---
R/make.design.matrix.R | 83 +++++++++++-------
R/mwtp.R | 220 ++++++++++++++++++++++++++++++++++---------------
R/print.cedes.R | 20 ++++
R/print.gofm.R | 11 ++
R/print.mwtp.R | 13 ++
R/questionnaire.R | 27 ++++--
R/rotation.design.R | 63 +++++++++-----
data/pork.rda |only
data/rice.rda |only
data/rural.rda |only
man/gofm.Rd | 4
man/make.dataset.Rd | 3
man/mwtp.Rd | 25 ++++-
man/pork.Rd |only
man/rice.Rd |only
man/rural.Rd |only
22 files changed, 481 insertions(+), 211 deletions(-)
Title: Robust Linear Mixed Effects Models
Diff between robustlmm versions 1.4-2 dated 2014-02-01 and 1.4-3 dated 2014-03-13
Description: Robust mixed effects modeling by robustification
of scoring equations using the Design Adaptive Scale approach.
Author: Manuel Koller
Maintainer: Manuel Koller
DESCRIPTION | 8
MD5 | 64 +--
R/AllClass.R | 2
R/accessors.R | 12
R/fromLme4.R | 214 +++++++++--
R/helpers.R | 146 +++----
R/plot.R | 12
R/rlmer.R | 6
inst/doc/rlmer.R | 2
inst/doc/rlmer.Rnw | 2
inst/doc/rlmer.pdf |binary
man/compare.Rd | 14
man/plot.rlmerMod.Rd | 12
man/residuals.rlmerMod.Rd | 8
man/rlmer.Rd | 2
tests/compare-methods.Rout.save | 44 +-
tests/genericFunctions.R | 20 -
tests/getME.Rout.save | 18
vignettes/cache/6b459128b6f80b01986ff6c4115e7dfb52f962fb |binary
vignettes/cache/e514dc7b17af4b19dcabad5cf474029c569fca86 |binary
vignettes/figs/fig-ex-penicillin-qq-ranef.pdf |binary
vignettes/figs/fig-ex-penicillin-qq-resid.pdf |binary
vignettes/figs/fig-ex-penicillin-raw.pdf |binary
vignettes/figs/fig-ex-penicillin-robustness-weights.pdf |binary
vignettes/figs/fig-ex-penicillin-ta.pdf |binary
vignettes/figs/fig-ex-sleepstudy-ex-comparsion-subsample.pdf |binary
vignettes/figs/fig-ex-sleepstudy-ex-comparsion.pdf |binary
vignettes/figs/fig-ex-sleepstudy-qq-ranef.pdf |binary
vignettes/figs/fig-ex-sleepstudy-qq-resid.pdf |binary
vignettes/figs/fig-ex-sleepstudy-ranef-scatterplot.pdf |binary
vignettes/figs/fig-ex-sleepstudy-raw.pdf |binary
vignettes/figs/fig-ex-sleepstudy-ta.pdf |binary
vignettes/figs/fig-ex-smoothedHuber.pdf |binary
33 files changed, 408 insertions(+), 178 deletions(-)
Title: Bridging the gap between qualitative data and quantitative
analysis
Diff between qdap versions 1.2.0 dated 2014-03-06 and 1.3.1 dated 2014-03-13
Description: This package automates many of the tasks associated with
quantitative discourse analysis of transcripts containing discourse
including frequency counts of sentence types, words, sentences, turns of
talk, syllables and other assorted analysis tasks. The package
provides parsing tools for preparing transcript data. Many functions
enable the user to aggregate data by any number of grouping variables
providing analysis and seamless integration with other R packages that
undertake higher level analysis and visualization of text. This affords
the user a more efficient and targeted analysis. qdap is designed for
transcript analysis, however, many functions are applicable to other areas
of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
DESCRIPTION | 7 -
MD5 | 119 +++++++++++--------
NAMESPACE | 3
NEWS | 65 ++++++++++
R/cm_distance.R | 108 +++++++++++++++++
R/cmspans.R | 28 +++-
R/formality.R | 24 +++
R/mtabulate.R | 6
R/name2sex.R | 13 +-
R/polarity.R | 32 ++---
R/read.transcript.R | 1
R/rm_stopwords.R | 2
R/tdm.R | 265 ++++++++++++++++++++++++++++++++-----------
R/wfm.R | 208 +++++++++++++++++++++++++++------
R/word_cor.R | 56 +++++++--
R/word_count.R | 7 -
README.md | 17 --
build |only
data/DATA.SPLIT.rda |binary
data/DATA.rda |binary
data/DATA2.rda |binary
data/mraja1.rda |binary
data/mraja1spl.rda |binary
data/pres_debate_raw2012.rda |binary
data/pres_debates2012.rda |binary
data/raj.act.1.rda |binary
data/raj.act.2.rda |binary
data/raj.act.3.rda |binary
data/raj.act.4.rda |binary
data/raj.act.5.rda |binary
data/raj.demographics.rda |binary
data/raj.rda |binary
data/rajPOS.rda |binary
data/rajSPLIT.rda |binary
data/raw.time.span.rda |binary
data/sample.time.span.rda |binary
inst/CITATION | 4
inst/doc |only
man/Filter.Rd |only
man/Word_Frequency_Matrix.Rd | 22 ---
man/cm_distance.Rd | 31 +++++
man/mtabulate.Rd | 6
man/name2sex.Rd | 9 +
man/plot.cm_distance.Rd |only
man/plot.word_cor.Rd | 10 +
man/print.formality.Rd | 4
man/print.polarity_count.Rd | 2
man/print.polarity_score.Rd | 2
man/print.wfm.Rd | 6
man/print.wfm_summary.Rd |only
man/rm_stopwords.Rd | 2
man/summary.cmspans.Rd | 5
man/tdm.Rd | 147 ++++++++++++++++-------
man/word_cor.Rd | 18 ++
vignettes |only
55 files changed, 939 insertions(+), 290 deletions(-)
Title: Linear Group Fixed Effects
Diff between lfe versions 1.7-1286 dated 2014-03-09 and 1.7-1289 dated 2014-03-13
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors as pure control variables.
Includes support for instrumented variables, robust and multi-way clustered standard errors.
Author: Simen Gaure, Ragnar Frisch Centre for Economic Research
Maintainer: Simen Gaure
DESCRIPTION | 8
MD5 | 20 -
build/autoconf/install-sh | 668 ++++++++++++++++++++++++++++++--------------
build/vignette.rds |binary
configure | 18 -
inst/doc/CHANGELOG | 6
inst/doc/identification.pdf |binary
inst/doc/lfehow.pdf |binary
inst/doc/speed.pdf |binary
src/lfe.c | 15
tests/efcheck.Rout.save | 6
11 files changed, 497 insertions(+), 244 deletions(-)
Title: Interactive web-maps based on the Leaflet JavaScript library
Diff between leafletR versions 0.1-1 dated 2014-01-28 and 0.1-2 dated 2014-03-13
Description: Display your spatial data on interactive web-maps using the open-source JavaScript library Leaflet. The package provides basic web-mapping functionality to combine vector data files and online map tiles from different sources.
Author: Christian Graul
Maintainer: Christian Graul
DESCRIPTION | 12 -
MD5 | 28 +--
R/getProperties.R |only
R/leaflet.R | 16 +
R/leafletInt.R | 388 ++++++++++++++++++++++++++++++++++++------------
R/styleCat.R | 43 +++--
R/styleGrad.R | 57 ++++---
R/styleSingle.R | 2
R/zzz.R | 4
inst/NEWS | 26 ++-
man/getProperties.Rd |only
man/leaflet.Rd | 25 ++-
man/leafletR-package.Rd | 10 -
man/styleCat.Rd | 25 +--
man/styleGrad.Rd | 11 +
man/toGeoJSON.Rd | 2
16 files changed, 470 insertions(+), 179 deletions(-)
Title: Foreach parallel adaptor for the snow package
Diff between doSNOW versions 1.0.11 dated 2014-02-21 and 1.0.12 dated 2014-03-13
Description: Provides a parallel backend for the %dopar% function using
Luke Tierney's snow package.
Author: Revolution Analytics, Steve Weston
Maintainer: Revolution Analytics
DESCRIPTION | 10 +++++-----
MD5 | 4 ++--
man/registerDoSNOW.Rd | 6 +++---
3 files changed, 10 insertions(+), 10 deletions(-)
Title: Linear regression based on linear structure between covariates
Diff between CorReg versions 0.14.2 dated 2014-02-14 and 0.14.3 dated 2014-03-13
Description: Sequential linear regression based on a recursive structural
equation model (explicit correlations). It permits to face highly
correlated datasets.
Author: Clement THERY [aut, cre],
Christophe BIERNACKI [ctb],
Gaetan LORIDANT [ctb],
Florian WATRIN [ctb],
Quentin GRIMONPREZ [ctb]
Maintainer: Clement THERY
CorReg-0.14.2/CorReg/R/showmiss.R |only
CorReg-0.14.3/CorReg/DESCRIPTION | 26 +++---
CorReg-0.14.3/CorReg/MD5 | 81 ++++++++++--------
CorReg-0.14.3/CorReg/NAMESPACE | 8 +
CorReg-0.14.3/CorReg/NEWS |only
CorReg-0.14.3/CorReg/R/A_clere.R |only
CorReg-0.14.3/CorReg/R/BicZ.R | 2
CorReg-0.14.3/CorReg/R/CVMSE.R | 16 ++-
CorReg-0.14.3/CorReg/R/Y_generator.R | 19 +++-
CorReg-0.14.3/CorReg/R/cleanZ.R | 2
CorReg-0.14.3/CorReg/R/cleancolZ.R | 3
CorReg-0.14.3/CorReg/R/confint_coef.R | 55 +++++++++---
CorReg-0.14.3/CorReg/R/correg.R | 103 +++++++++++++++---------
CorReg-0.14.3/CorReg/R/density_estimation.R | 1
CorReg-0.14.3/CorReg/R/generateurA_ou.R | 24 +++--
CorReg-0.14.3/CorReg/R/icmoyenne.R |only
CorReg-0.14.3/CorReg/R/icproportion.R |only
CorReg-0.14.3/CorReg/R/mixture_generator.R | 37 +++++++-
CorReg-0.14.3/CorReg/R/readY.R | 11 ++
CorReg-0.14.3/CorReg/R/recursive_tree.R |only
CorReg-0.14.3/CorReg/R/searchZ.R | 31 +++++--
CorReg-0.14.3/CorReg/R/searchZ_sparse.R | 3
CorReg-0.14.3/CorReg/R/searchZmiss.R | 1
CorReg-0.14.3/CorReg/R/showdata.R |only
CorReg-0.14.3/CorReg/man/CVMSE.Rd |only
CorReg-0.14.3/CorReg/man/CorReg-package.Rd | 2
CorReg-0.14.3/CorReg/man/Y_generator.Rd | 14 +++
CorReg-0.14.3/CorReg/man/confint_coef.Rd |only
CorReg-0.14.3/CorReg/man/correg.Rd | 9 +-
CorReg-0.14.3/CorReg/man/mixture_generator.Rd | 13 ++-
CorReg-0.14.3/CorReg/man/readY.Rd | 10 ++
CorReg-0.14.3/CorReg/man/recursive_tree.Rd |only
CorReg-0.14.3/CorReg/man/searchZ.Rd | 6 -
CorReg-0.14.3/CorReg/man/showdata.Rd |only
CorReg-0.14.3/CorReg/src/BICZsparse2_cpp.cpp | 6 -
CorReg-0.14.3/CorReg/src/BICZsparse2_cpp.h | 2
CorReg-0.14.3/CorReg/src/BICZsparse_cpp.cpp | 3
CorReg-0.14.3/CorReg/src/BICZsparse_cpp.h | 4
CorReg-0.14.3/CorReg/src/BICZsparse_j_cpp.h | 2
CorReg-0.14.3/CorReg/src/BicZ_cpp.h | 2
CorReg-0.14.3/CorReg/src/BicZ_cpp2.h | 2
CorReg-0.14.3/CorReg/src/BicZ_j_cpp.h | 2
CorReg-0.14.3/CorReg/src/OLS_cpp.h | 2
CorReg-0.14.3/CorReg/src/kronecker_prod_cpp.cpp | 2
CorReg-0.14.3/CorReg/src/kronecker_prod_cpp.h | 4
CorReg-0.14.3/CorReg/src/kronecker_sum_cpp.cpp | 2
CorReg-0.14.3/CorReg/src/kronecker_sum_cpp.h | 3
47 files changed, 349 insertions(+), 164 deletions(-)
Title: Automates the creation of new statistical analysis projects.
Diff between ProjectTemplate versions 0.4-2 dated 2012-05-13 and 0.5 dated 2014-03-13
More information about ProjectTemplate at CRAN
Description: ProjectTemplate provides functions to
automatically build a directory structure for a new R
project. Using this structure, ProjectTemplate
automates data loading, preprocessing, library
importing and unit testing.
Author: Aleksandar Blagotic [ctb],
Diego Valle-Jones [ctb],
Jeffrey Breen [ctb],
Joakim Lundborg [ctb],
John Myles White [aut, cph],
Josh Bode [ctb],
Kenton White [ctb],
Kirill Mueller [ctb, cre],
Matteo Redaelli [ctb],
Noah Lorang [ctb],
Patrick Schalk [ctb]
Maintainer: Kirill Mueller
ProjectTemplate-0.4-2/ProjectTemplate/.gitignore |only
ProjectTemplate-0.4-2/ProjectTemplate/ChangeLog |only
ProjectTemplate-0.4-2/ProjectTemplate/PT_Logo.ai |only
ProjectTemplate-0.4-2/ProjectTemplate/README.markdown |only
ProjectTemplate-0.4-2/ProjectTemplate/TODO.markdown |only
ProjectTemplate-0.4-2/ProjectTemplate/build_docs.R |only
ProjectTemplate-0.4-2/ProjectTemplate/build_script.R |only
ProjectTemplate-0.4-2/ProjectTemplate/build_script.sh |only
ProjectTemplate-0.4-2/ProjectTemplate/html_docs |only
ProjectTemplate-0.4-2/ProjectTemplate/ideas |only
ProjectTemplate-0.4-2/ProjectTemplate/inst/defaults/full |only
ProjectTemplate-0.4-2/ProjectTemplate/inst/defaults/minimal |only
ProjectTemplate-0.4-2/ProjectTemplate/roxygenate.R |only
ProjectTemplate-0.4-2/ProjectTemplate/slides |only
ProjectTemplate-0.4-2/ProjectTemplate/upload.sh |only
ProjectTemplate-0.4-2/ProjectTemplate/website |only
ProjectTemplate-0.5/ProjectTemplate/DESCRIPTION | 68 +-
ProjectTemplate-0.5/ProjectTemplate/MD5 | 253 +++-------
ProjectTemplate-0.5/ProjectTemplate/NAMESPACE | 7
ProjectTemplate-0.5/ProjectTemplate/R/arff.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/cache.R | 2
ProjectTemplate-0.5/ProjectTemplate/R/cache.project.R | 5
ProjectTemplate-0.5/ProjectTemplate/R/clean.variable.name.R | 1
ProjectTemplate-0.5/ProjectTemplate/R/create.project.R | 106 +++-
ProjectTemplate-0.5/ProjectTemplate/R/csv.reader.R | 2
ProjectTemplate-0.5/ProjectTemplate/R/csv2.reader.R |only
ProjectTemplate-0.5/ProjectTemplate/R/db.reader.R | 15
ProjectTemplate-0.5/ProjectTemplate/R/dbf.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/epiinfo.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/extensions.dispatch.table.R | 148 +++--
ProjectTemplate-0.5/ProjectTemplate/R/file.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/get.project.R |only
ProjectTemplate-0.5/ProjectTemplate/R/load.project.R | 93 ++-
ProjectTemplate-0.5/ProjectTemplate/R/mp3.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/mtp.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/octave.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/ppm.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/rdata.reader.R | 2
ProjectTemplate-0.5/ProjectTemplate/R/reload.project.R | 2
ProjectTemplate-0.5/ProjectTemplate/R/require.package.R |only
ProjectTemplate-0.5/ProjectTemplate/R/show.project.R | 5
ProjectTemplate-0.5/ProjectTemplate/R/spss.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/sql.reader.R | 144 +++++
ProjectTemplate-0.5/ProjectTemplate/R/stata.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/systat.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/R/test.project.R | 15
ProjectTemplate-0.5/ProjectTemplate/R/translate.dcf.R | 2
ProjectTemplate-0.5/ProjectTemplate/R/tsv.reader.R | 2
ProjectTemplate-0.5/ProjectTemplate/R/url.reader.R | 12
ProjectTemplate-0.5/ProjectTemplate/R/wsv.reader.R | 2
ProjectTemplate-0.5/ProjectTemplate/R/xls.reader.R | 7
ProjectTemplate-0.5/ProjectTemplate/R/xlsx.reader.R | 6
ProjectTemplate-0.5/ProjectTemplate/R/xport.reader.R | 4
ProjectTemplate-0.5/ProjectTemplate/inst/NEWS.Rd |only
ProjectTemplate-0.5/ProjectTemplate/inst/defaults/full.tar |only
ProjectTemplate-0.5/ProjectTemplate/inst/defaults/minimal.tar |only
ProjectTemplate-0.5/ProjectTemplate/man/ProjectTemplate.Rd | 14
ProjectTemplate-0.5/ProjectTemplate/man/arff.reader.Rd | 10
ProjectTemplate-0.5/ProjectTemplate/man/cache.Rd | 15
ProjectTemplate-0.5/ProjectTemplate/man/cache.name.Rd | 9
ProjectTemplate-0.5/ProjectTemplate/man/cache.project.Rd | 22
ProjectTemplate-0.5/ProjectTemplate/man/clean.variable.name.Rd | 14
ProjectTemplate-0.5/ProjectTemplate/man/create.project.Rd | 39 +
ProjectTemplate-0.5/ProjectTemplate/man/csv.reader.Rd | 10
ProjectTemplate-0.5/ProjectTemplate/man/csv2.reader.Rd |only
ProjectTemplate-0.5/ProjectTemplate/man/db.reader.Rd | 15
ProjectTemplate-0.5/ProjectTemplate/man/dbf.reader.Rd | 10
ProjectTemplate-0.5/ProjectTemplate/man/epiinfo.reader.Rd | 10
ProjectTemplate-0.5/ProjectTemplate/man/extensions.dispatch.table.Rd | 69 ++
ProjectTemplate-0.5/ProjectTemplate/man/file.reader.Rd | 24
ProjectTemplate-0.5/ProjectTemplate/man/get.project.Rd |only
ProjectTemplate-0.5/ProjectTemplate/man/load.project.Rd | 15
ProjectTemplate-0.5/ProjectTemplate/man/mp3.reader.Rd | 12
ProjectTemplate-0.5/ProjectTemplate/man/mtp.reader.Rd | 10
ProjectTemplate-0.5/ProjectTemplate/man/octave.reader.Rd | 9
ProjectTemplate-0.5/ProjectTemplate/man/ppm.reader.Rd | 12
ProjectTemplate-0.5/ProjectTemplate/man/r.reader.Rd | 13
ProjectTemplate-0.5/ProjectTemplate/man/rdata.reader.Rd | 12
ProjectTemplate-0.5/ProjectTemplate/man/reload.project.Rd | 14
ProjectTemplate-0.5/ProjectTemplate/man/require.package.Rd |only
ProjectTemplate-0.5/ProjectTemplate/man/run.project.Rd | 16
ProjectTemplate-0.5/ProjectTemplate/man/show.project.Rd | 27 -
ProjectTemplate-0.5/ProjectTemplate/man/spss.reader.Rd | 13
ProjectTemplate-0.5/ProjectTemplate/man/sql.reader.Rd | 117 +++-
ProjectTemplate-0.5/ProjectTemplate/man/stata.reader.Rd | 9
ProjectTemplate-0.5/ProjectTemplate/man/stub.tests.Rd | 19
ProjectTemplate-0.5/ProjectTemplate/man/systat.reader.Rd | 9
ProjectTemplate-0.5/ProjectTemplate/man/test.project.Rd | 18
ProjectTemplate-0.5/ProjectTemplate/man/translate.dcf.Rd | 12
ProjectTemplate-0.5/ProjectTemplate/man/tsv.reader.Rd | 10
ProjectTemplate-0.5/ProjectTemplate/man/url.reader.Rd | 27 -
ProjectTemplate-0.5/ProjectTemplate/man/wsv.reader.Rd | 10
ProjectTemplate-0.5/ProjectTemplate/man/xls.reader.Rd | 13
ProjectTemplate-0.5/ProjectTemplate/man/xlsx.reader.Rd | 13
ProjectTemplate-0.5/ProjectTemplate/man/xport.reader.Rd | 9
ProjectTemplate-0.5/ProjectTemplate/tests/1.R | 3
ProjectTemplate-0.5/ProjectTemplate/tests/3.R | 26 +
ProjectTemplate-0.5/ProjectTemplate/tests/5.R |only
98 files changed, 988 insertions(+), 668 deletions(-)
Permanent link
Title: International Assessment Data Manager
Diff between intsvy versions 1.2 dated 2013-10-27 and 1.3 dated 2014-03-13
Description: Provides tools for importing, merging, and analysing data from international assessment studies (TIMSS, PIRLS, and PISA)
Author: Daniel Caro
Maintainer: Daniel Caro
DESCRIPTION | 8 +--
MD5 | 40 +++++++--------
NAMESPACE | 35 ++++++++++++-
R/pisa.ben.pv.R | 4 -
R/pisa.mean.R | 3 -
R/pisa.mean.pv.R | 3 -
R/pisa.reg.pv.R | 2
R/pisa.select.merge.R | 123 ++++++++++++++++++++++++-----------------------
R/pisa.table.R | 2
R/pisa.var.label.R | 46 +++++++++++------
data/pisa.country.RData |binary
man/intsvy-package.Rd | 6 +-
man/pisa.ben.pv.Rd | 8 +--
man/pisa.country.Rd | 2
man/pisa.mean.Rd | 9 ++-
man/pisa.mean.pv.Rd | 16 ++----
man/pisa.reg.Rd | 3 -
man/pisa.reg.pv.Rd | 3 -
man/pisa.select.merge.Rd | 29 ++++++++---
man/pisa.table.Rd | 5 +
man/pisa.var.label.Rd | 17 +++++-
21 files changed, 223 insertions(+), 141 deletions(-)
Title: R binder for the Yhat API
Diff between yhatr versions 0.8 dated 2014-02-28 and 0.8.1 dated 2014-03-13
Description: yhatr lets you deploy, maintain, and invoke models via the Yhat
REST API.
Author: Greg Lamp
Maintainer: Greg Lamp
yhatr-0.8.1/yhatr/DESCRIPTION | 8 ++++----
yhatr-0.8.1/yhatr/MD5 | 6 +++---
yhatr-0.8.1/yhatr/NEWS | 6 ++++++
yhatr-0.8.1/yhatr/R/yhatR.R |only
yhatr-0.8/yhatr/R/yhatr.R |only
5 files changed, 13 insertions(+), 7 deletions(-)
Title: Family of Lasso Regression
Diff between flare versions 1.0.0 dated 2013-08-27 and 1.1.0 dated 2014-03-13
Description: The package "flare" provides the implementation of a family of Lasso variants including Dantzig Selector, LAD Lasso, SQRT Lasso, Lq Lasso for estimating high dimensional sparse linear model. We adopt the alternating direction method of multipliers and convert the original optimization problem into a sequential L1 penalized least square minimization problem, which can be efficiently solved by linearization algorithm. Besides the sparse linear model estimation, we also provide the extension of these Lasso variants to sparse Gaussian graphical model estimation including TIGER and CLIME using either L1 or adaptive penalty. The computation is memory-optimized using the sparse matrix output.
Author: Xingguo Li, Tuo Zhao, Lie Wang, Xiaoming Yuan and Han Liu
Maintainer: Xingguo Li
flare-1.0.0/flare/R/flare.plot.R |only
flare-1.0.0/flare/R/flare.slim.R |only
flare-1.0.0/flare/R/flare.slim.dantzig.mfista.R |only
flare-1.0.0/flare/R/flare.slim.lad.mfista.R |only
flare-1.0.0/flare/R/flare.slim.sqrt.mfista.R |only
flare-1.0.0/flare/R/flare.tiger.R |only
flare-1.0.0/flare/R/flare.tiger.clime.mfista.R |only
flare-1.0.0/flare/R/flare.tiger.cv.R |only
flare-1.0.0/flare/R/flare.tiger.generator.R |only
flare-1.0.0/flare/R/flare.tiger.roc.R |only
flare-1.0.0/flare/R/flare.tiger.select.R |only
flare-1.0.0/flare/R/flare.tiger.slasso.mfista.R |only
flare-1.0.0/flare/inst/doc/vignette.R |only
flare-1.0.0/flare/man/flare.plot.Rd |only
flare-1.0.0/flare/man/flare.slim.Rd |only
flare-1.0.0/flare/man/flare.tiger.Rd |only
flare-1.0.0/flare/man/flare.tiger.generator.Rd |only
flare-1.0.0/flare/man/flare.tiger.roc.Rd |only
flare-1.0.0/flare/man/flare.tiger.select.Rd |only
flare-1.0.0/flare/man/plot.tiger.Rd |only
flare-1.0.0/flare/man/print.tiger.Rd |only
flare-1.0.0/flare/src/slim_dantzig_mfista.c |only
flare-1.0.0/flare/src/slim_lad_mfista.c |only
flare-1.0.0/flare/src/slim_lq.c |only
flare-1.0.0/flare/src/slim_sqrt_mfista.c |only
flare-1.0.0/flare/src/tiger_clime_mfista.c |only
flare-1.0.0/flare/src/tiger_slasso_mfista.c |only
flare-1.1.0/flare/DESCRIPTION | 13 -
flare-1.1.0/flare/MD5 | 96 +++++----
flare-1.1.0/flare/NAMESPACE | 40 ++--
flare-1.1.0/flare/R/slim.R |only
flare-1.1.0/flare/R/slim.dantzig.ladm.scr.R |only
flare-1.1.0/flare/R/slim.dantzig.ladm.scr2.R |only
flare-1.1.0/flare/R/slim.lad.ladm.scr.btr.R |only
flare-1.1.0/flare/R/slim.lasso.ladm.scr.R |only
flare-1.1.0/flare/R/slim.lq.ladm.scr.btr.R |only
flare-1.1.0/flare/R/slim.sqrt.ladm.scr.R |only
flare-1.1.0/flare/R/sugm.R |only
flare-1.1.0/flare/R/sugm.clime.ladm.scr.R |only
flare-1.1.0/flare/R/sugm.cv.R |only
flare-1.1.0/flare/R/sugm.generator.R |only
flare-1.1.0/flare/R/sugm.plot.R |only
flare-1.1.0/flare/R/sugm.roc.R |only
flare-1.1.0/flare/R/sugm.select.R |only
flare-1.1.0/flare/R/sugm.tiger.ladm.scr.R |only
flare-1.1.0/flare/build |only
flare-1.1.0/flare/inst/doc/flare.pdf |binary
flare-1.1.0/flare/inst/doc/vignette.pdf |binary
flare-1.1.0/flare/man/coef.slim.Rd |only
flare-1.1.0/flare/man/eyedata.Rd | 2
flare-1.1.0/flare/man/flare-internal.Rd | 49 ++--
flare-1.1.0/flare/man/flare-package.Rd | 28 +-
flare-1.1.0/flare/man/plot.roc.Rd | 4
flare-1.1.0/flare/man/plot.select.Rd | 4
flare-1.1.0/flare/man/plot.sim.Rd | 12 -
flare-1.1.0/flare/man/plot.slim.Rd | 13 -
flare-1.1.0/flare/man/plot.sugm.Rd |only
flare-1.1.0/flare/man/predict.slim.Rd |only
flare-1.1.0/flare/man/print.roc.Rd | 12 -
flare-1.1.0/flare/man/print.select.Rd | 12 -
flare-1.1.0/flare/man/print.sim.Rd | 12 -
flare-1.1.0/flare/man/print.slim.Rd | 14 -
flare-1.1.0/flare/man/print.sugm.Rd |only
flare-1.1.0/flare/man/slim.Rd |only
flare-1.1.0/flare/man/sugm.Rd |only
flare-1.1.0/flare/man/sugm.generator.Rd |only
flare-1.1.0/flare/man/sugm.plot.Rd |only
flare-1.1.0/flare/man/sugm.roc.Rd |only
flare-1.1.0/flare/man/sugm.select.Rd |only
flare-1.1.0/flare/src/mymath.c | 239 ++++++++++++++++++++++++
flare-1.1.0/flare/src/mymath.h | 52 +++++
flare-1.1.0/flare/src/slim_dantzig_ladm_scr.c |only
flare-1.1.0/flare/src/slim_lad_ladm_scr_btr.c |only
flare-1.1.0/flare/src/slim_lasso_ladm_scr.c |only
flare-1.1.0/flare/src/slim_lq_ladm_scr_btr.c |only
flare-1.1.0/flare/src/slim_sqrt_ladm_scr.c |only
flare-1.1.0/flare/src/sugm_clime_ladm_scr.c |only
flare-1.1.0/flare/src/sugm_tiger_ladm_scr.c |only
flare-1.1.0/flare/vignettes/flare.pdf |binary
79 files changed, 452 insertions(+), 150 deletions(-)
Title: Efficient effects size computation
Diff between effsize versions 0.3.1 dated 2014-02-25 and 0.4.1 dated 2014-03-13
Description: This package contains the functions to compute the standardized
effect sizes for experiments (Cohen d, Hedges g, Cliff delta).
Using highly efficient algorithms.
Author: Marco Torchiano
Maintainer: Marco Torchiano
DESCRIPTION | 16 ++--
MD5 | 11 +-
R/CliffDelta.R | 180 ++++++++++++++++++++++++++++++++-----------------
R/CohenD.R | 3
R/printes.R |only
man/cliff.delta.Rd | 21 ++---
man/effsize-package.Rd | 10 +-
7 files changed, 154 insertions(+), 87 deletions(-)