Sun, 16 Mar 2014

Package likeLTD updated to version 5.3.0 with previous version 5.2.1 dated 2014-03-05

Title: Tools to determine DNA profile evidence.
Description: Tools to determine DNA profile Weight of Evidence. For further information see the likeLTD guide at the URL provided, or the paper under citation.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele

Diff between likeLTD versions 5.2.1 dated 2014-03-05 and 5.3.0 dated 2014-03-16

 likeLTD-5.2.1/likeLTD/man/output.names.Rd            |only
 likeLTD-5.3.0/likeLTD/DESCRIPTION                    |   13 
 likeLTD-5.3.0/likeLTD/MD5                            |   17 
 likeLTD-5.3.0/likeLTD/NAMESPACE                      |    5 
 likeLTD-5.3.0/likeLTD/R/plotter.R                    |    1 
 likeLTD-5.3.0/likeLTD/R/reports.R                    | 1848 +++++++------------
 likeLTD-5.3.0/likeLTD/inst/doc/usage.pdf             |binary
 likeLTD-5.3.0/likeLTD/inst/unitTests/runit_reports.R |  165 -
 likeLTD-5.3.0/likeLTD/man/allele.report.Rd           |   10 
 likeLTD-5.3.0/likeLTD/man/output.report.Rd           |   14 
 10 files changed, 775 insertions(+), 1298 deletions(-)

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New package GEVStableGarch with initial version 1.0
Package: GEVStableGarch
Type: Package
Title: ARMA-GARCH/APARCH models with GEV and stable distributions
Version: 1.0
Date: 2014-03-09
Author: Thiago do Rego Sousa, Cira Etheowalda Guevara Otiniano and Silvia Regina Costa Lopes
Maintainer: Thiago do Rego Sousa
Depends: R(>= 2.15.0),fGarch,fExtremes,stabledist,skewt,Rsolnp
Enhances: stable
Description: Package for ARMA-GARCH or ARMA-APARCH modelling with GEV and stable conditional distributions.
License: GPL (>= 2)
Packaged: 2014-03-15 21:55:27 UTC; THIAGO-
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-16 18:51:49

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Package ELT updated to version 1.1 with previous version 1.0 dated 2014-01-24

Title: ELT - A package to build Experience Life Tables
Description: The package is meant to help actuaries to build experience life tables. It contains functions to calculate exposure and number of deaths, smoothing following four different methods, and validation following three criteria.
Author: Julien Tomas, Frederic Planchet, Wassim Youssef
Maintainer: Wassim Youssef

Diff between ELT versions 1.0 dated 2014-01-24 and 1.1 dated 2014-03-16

 DESCRIPTION        |    8 ++++----
 MD5                |    8 ++++----
 R/S06.R            |    2 +-
 R/SExcel.R         |    2 +-
 man/ELT-package.Rd |    4 ++--
 5 files changed, 12 insertions(+), 12 deletions(-)

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Package Snowball (with last version 0.0-11) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-01-14 0.0-11
2013-07-29 0.0-10
2013-03-19 0.0-9
2012-03-05 0.0-8
2009-08-31 0.0-7
2009-06-09 0.0-6
2009-04-30 0.0-5
2009-04-29 0.0-4
2007-09-11 0.0-3
2007-09-08 0.0-2
2007-02-14 0.0-1

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Package formula.tools (with last version 1.3.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-11-30 1.3.1

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Package DeducerText (with last version 0.1-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-09-11 0.1-0

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Package VA (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-12-13 1.0

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Package RJSONLD (with last version 1.0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-03-10 1.0.3
2014-01-25 1.0.2
2014-01-15 1.0.1
2014-01-06 1.0

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Package lsa (with last version 0.63-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-06-26 0.63-3
2010-11-22 0.63-2
2009-09-10 0.63-1
2009-08-21 0.63
2009-02-10 0.61
2008-02-19 0.59
2005-11-25 0.57

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Package robCompositions updated to version 1.8.0 with previous version 1.7.0 dated 2014-02-07

Title: Robust Estimation for Compositional Data.
Description: The package includes methods for imputation of compositional data including robust methods, methods to impute rounded zeros, (robust) outlier detection for compositional data, (robust) principal component analysis for compositional data, (robust) factor analysis for compositional data, (robust) discriminant analysis for compositional data (Fisher rule), robust regression with compositional predictors and (robust) Anderson-Darling normality tests for compositional data as well as popular log-ratio transformations (addLR, cenLR, isomLR, and their inverse transformations). In addition, visualisation and diagnostic tools are implemented as well as high and low-level plot functions for the ternary diagram.
Author: Matthias Templ, Karel Hron, Peter Filzmoser
Maintainer: Matthias Templ

Diff between robCompositions versions 1.7.0 dated 2014-02-07 and 1.8.0 dated 2014-03-16

 DESCRIPTION              |    8 
 MD5                      |   48 -
 NEWS                     |  102 +-
 R/impCoda.R              |  624 ++++++-------
 R/impRZilr.R             | 2172 ++++++++++++++++++++---------------------------
 R/lmCoDaX.R              |  144 +--
 R/utils.R                |   91 +
 build/vignette.rds       |binary
 inst/doc/imputation.R    |  778 ++++++++--------
 inst/doc/imputation.Rnw  | 2014 +++++++++++++++++++++----------------------
 inst/doc/imputation.pdf  |binary
 man/aDist.Rd             |    4 
 man/addLR.Rd             |    2 
 man/addLRinv.Rd          |    3 
 man/arcticLake.Rd        |    3 
 man/constSum.Rd          |   71 -
 man/gm.Rd                |    3 
 man/impCoda.Rd           |  138 +-
 man/impRZalr.Rd          |   92 -
 man/impRZilr.Rd          |  164 +--
 man/isomLR.Rd            |    2 
 man/robVariation.Rd      |    1 
 man/ternaryDiag.Rd       |  104 +-
 tests/rz.R               |  106 +-
 vignettes/imputation.Rnw | 2014 +++++++++++++++++++++----------------------
 25 files changed, 4268 insertions(+), 4420 deletions(-)

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Package dendextendRcpp updated to version 0.5.1 with previous version 0.5.0 dated 2014-03-15

Title: Faster dendrogram manipulation using Rcpp
Description: This package offers faster manipulation of dendrogram objects in R. A dendrogram object in R is a list structure with attributes in its nodes and leaves. Working with dendrogram objects often require a function to recursively go through all (or most) element in the list object. Naturally, such function are rather slow in R, but can become much faster thanks to Rcpp.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com), Romain Francois [ctb], Dirk Eddelbuettel [ctb], Kevin Ushey [ctb], Yoav Benjamini [ths]
Maintainer: Tal Galili

Diff between dendextendRcpp versions 0.5.0 dated 2014-03-15 and 0.5.1 dated 2014-03-16

 DESCRIPTION                                    |    8 ++++----
 MD5                                            |   16 ++++++++--------
 NEWS                                           |   10 ++++++++++
 R/get_dend_heights.r                           |    3 ++-
 R/heights_per_k.r                              |    2 ++
 R/labels_dendrogram.r                          |    2 ++
 man/dendextendRcpp_get_branches_heights.Rd     |    3 ++-
 man/dendextendRcpp_heights_per_k.dendrogram.Rd |    2 ++
 man/labels.dendrogram.Rd                       |    2 ++
 9 files changed, 34 insertions(+), 14 deletions(-)

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New package darch with initial version 0.9.1
Package: darch
Type: Package
Title: Package for deep architectures and Restricted-Bolzmann-Machines
Version: 0.9.1
Date: 2013-04-17
Author: Martin Drees
Maintainer: Martin Drees
Description: The darch package is build on the basis of the code from G. E. Hinton and R. R. Salakhutdinov (available under Matlab Code for deep belief nets : last visit: 01.08.2013). This package is for generating neural networks with many layers (deep architectures) and train them with the method introduced by the publications "A fast learning algorithm for deep belief nets" (G. E. Hinton, S. Osindero, Y. W. Teh) and "Reducing the dimensionality of data with neural networks" (G. E. Hinton, R. R. Salakhutdinov). This method includes a pre training with the contrastive divergence method publishing by G.E Hinton (2002) and a fine tuning with common known training algorithms like backpropagation or conjugate gradient.
License: GPL-2
URL: http://github.com/maddin79/darch
Imports: futile.logger, ff, methods
Collate: 'net.R' 'darch.R' 'backpropagation.R' 'darch.Add.R' 'darch.Getter.R' 'darch.Learn.R' 'darch.Remove.R' 'darch.Reset.R' 'darch.Setter.R' 'darchUnitFunctions.R' 'errorFunctions.R' 'rbm.R' 'generateRBMs.R' 'generateWeights.R' 'loadDArch.R' 'loadRBM.R' 'loadRBMFFWeights.R' 'makeStartEndPoints.R' 'minimize.R' 'minimizeAutoencoder.R' 'minimizeClassifier.R' 'net.Getter.R' 'net.Setter.R' 'newDArch.R' 'rbm.Setter.R' 'rbm.Reset.R' 'newRBM.R' 'package-darch.R' 'rbm.Getter.R' 'rbm.Learn.R' 'rbmUnitFunctions.R' 'rbmUpdate.R' 'readMNIST.R' 'rpropagation.R' 'runDArch.R' 'saveDArch.R' 'saveRBM.R' 'saveRBMFFWeights.R'
Packaged: 2014-03-16 12:23:18 UTC; maddin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-16 13:34:52

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New package RSelenium with initial version 1.2.2
Package: RSelenium
Type: Package
Title: R bindings for Selenium webdriver.
Version: 1.2.2
Date: 2014-03-16
Author: John Harrison
Maintainer: John Harrison
Description: The RSelenium package provides a set of R bindings for the Selenium 2.0 webdriver using the JsonWireProtocol. Selenium automates browsers. Using RSelenium you can automate browsers locally or remotely.
License: AGPL-3
URL: http://johndharrison.github.io/RSelenium
BugReports: http://github.com/johndharrison/RSelenium/issues
Depends: R (>= 3.0.0),methods,RCurl,RJSONIO,caTools,XML
Suggests: testthat, knitr, Rcompression
VignetteBuilder: knitr
LazyData: yes
Collate: 'errorHandler.R' 'remoteDriver.R' 'selKeys-data.R' 'util.R' 'webElement.R' 'zzz.R'
Packaged: 2014-03-16 02:38:35 UTC; john
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-16 06:21:39

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Package ddalpha updated to version 1.0.5 with previous version 1.0.4 dated 2013-05-16

Title: DDalpha-classifier, depth-calculating methods and associated functions
Description: Contains methods for depth classification based on the \eqn{\alpha}-procedure and for calculation of statistical depths
Author: Oleksii Pokotylo [aut, cre], Pavlo Mozharovskyi [aut]
Maintainer: Oleksii Pokotylo

Diff between ddalpha versions 1.0.4 dated 2013-05-16 and 1.0.5 dated 2014-03-16

 DESCRIPTION                    |   22 +-
 MD5                            |   61 +++---
 NAMESPACE                      |    5 
 R/compclassf.r                 |only
 R/ddalpha-internal.r           |  381 +++++++++++++++++++++++++++++++++++------
 R/ddalpha.classify.r           |   98 ++++++++--
 R/ddalpha.train.r              |   88 ++++++++-
 R/ddalphaf.r                   |only
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 R/depth.spacial.r              |only
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 inst/CITATION                  |    9 
 man/ddalpha-package.Rd         |   16 -
 man/ddalpha.classify.Rd        |    6 
 man/ddalpha.train.Rd           |   30 ++-
 man/depth.randomTukey.Rd       |    4 
 man/depth.space.randomTukey.Rd |    6 
 man/depth.space.zonoid.Rd      |    6 
 man/depth.zonoid.Rd            |    4 
 man/is.in.convex.Rd            |    4 
 src/AlphaProcedure.cpp         |   14 -
 src/AlphaProcedure.h           |    4 
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 src/Common.h                   |only
 src/Knn.cpp                    |  152 +++++++++++++---
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 src/ProjectionDepth.h          |only
 src/TukeyDepth.cpp             |   43 ----
 src/ZonoidDepth.cpp            |   54 +++--
 src/ZonoidDepth.h              |    2 
 src/ddalpha.cpp                |  114 +++++++++++-
 src/stdafx.cpp                 |only
 src/stdafx.h                   |    2 
 38 files changed, 890 insertions(+), 254 deletions(-)

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