Title: Handy functions for working with HGNC gene symbols and
Affymetrix probeset identifiers.
Diff between HGNChelper versions 0.2.5 dated 2013-07-26 and 0.3.0 dated 2014-03-21
Description: Contains functions for
identifying and correcting HGNC gene symbols which have been converted
to date format by Excel, for reversibly converting between HGNC
symbols and valid R names, identifying invalid HGNC symbols and
correcting synonyms and outdated symbols which can be mapped to an
official symbol.
Author: Levi Waldron and Markus Riester
Maintainer: Levi Waldron
checkGeneSymbols.R | 23
tmp/cranberry1704217f2cad/HGNChelper-0.2.5/HGNChelper/inst/extdata/genenames_org.csv |only
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/CHANGELOG | 12
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/DESCRIPTION | 8
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/MD5 | 20
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/R/checkGeneSymbols.R | 18
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/build/HGNChelper.pdf |binary
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/data/hgnc.table.rda |binary
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/inst/extdata/genenames_org.rda |only
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/inst/extdata/mog_map.csv | 305 +++++++++-
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/inst/hgncLookup.R | 50 -
tmp/cranberry1704217f2cad/HGNChelper-0.3.0/HGNChelper/man/checkGeneSymbols.Rd | 17
12 files changed, 377 insertions(+), 76 deletions(-)
Title: Multinomial Logit Model
Diff between mnlogit versions 1.0.1 dated 2013-12-08 and 1.1.0 dated 2014-03-21
Description: Time and memory efficient estimation of multinomial logit models using maximum likelihood method. Numerical optimization performed by Newton-Raphson method using an optimized, parallel C++ library to achieve fast computation of Hessian matrices. Motivated by large scale multiclass classification problems in econometrics and machine learning.
Author: Wang Zhiyu, Asad Hasan
Maintainer: Asad Hasan
mnlogit-1.0.1/mnlogit/vignettes/images |only
mnlogit-1.1.0/mnlogit/ChangeLog |only
mnlogit-1.1.0/mnlogit/DESCRIPTION | 10
mnlogit-1.1.0/mnlogit/MD5 | 32 -
mnlogit-1.1.0/mnlogit/NAMESPACE | 2
mnlogit-1.1.0/mnlogit/R/likelihood.R | 57 +
mnlogit-1.1.0/mnlogit/R/mnlogit.R | 30 -
mnlogit-1.1.0/mnlogit/R/mnlogit.methods.R | 28
mnlogit-1.1.0/mnlogit/R/newton.R | 77 +-
mnlogit-1.1.0/mnlogit/R/predict.R |only
mnlogit-1.1.0/mnlogit/build/vignette.rds |binary
mnlogit-1.1.0/mnlogit/inst/doc/mnlogit.R | 80 +-
mnlogit-1.1.0/mnlogit/inst/doc/mnlogit.Rnw | 656 ++++++++++++++---------
mnlogit-1.1.0/mnlogit/inst/doc/mnlogit.pdf |binary
mnlogit-1.1.0/mnlogit/man/mnlogit.Rd | 17
mnlogit-1.1.0/mnlogit/src/hessian.cc | 97 ++-
mnlogit-1.1.0/mnlogit/src/hessian.h | 66 +-
mnlogit-1.1.0/mnlogit/vignettes/HessSpeedups.pdf |only
mnlogit-1.1.0/mnlogit/vignettes/mnlogit.Rnw | 656 ++++++++++++++---------
19 files changed, 1129 insertions(+), 679 deletions(-)
Title: Regularization paths for regression models with grouped
covariates
Diff between grpreg versions 2.5-0 dated 2013-12-24 and 2.6-0 dated 2014-03-21
Description: Efficient algorithms for fitting the regularization path of
linear or logistic regression models with grouped penalties. This
includes group selection methods such as group lasso, group MCP, and
group SCAD as well as bi-level selection methods such as the group
exponential lasso, the composite MCP, and the group bridge.
Author: Patrick Breheny
Maintainer: Patrick Breheny
DESCRIPTION | 10
MD5 | 32 -
NAMESPACE | 1
NEWS | 10
R/gBridge.R | 9
R/grpreg.R | 12
R/orthogonalize.R | 21
R/setupLambda.R | 19
R/standardize.R | 16
inst/tests/basic-functionality.R | 1
inst/tests/extra-features.R | 2
inst/tests/standardization-orthogonalization.R | 11
man/grpreg-internal.Rd | 2
src/binomial-gd.c |only
src/binomial-lcd.c |only
src/gaussian-gd.c |only
src/gaussian-lcd.c |only
src/grpreg.c | 613 +------------------------
src/maxprod.c |only
src/standardize.c |only
20 files changed, 114 insertions(+), 645 deletions(-)
Title: Instrumental Variable Estimation.
Diff between ivpack versions 1.0 dated 2014-01-14 and 1.1 dated 2014-03-21
Description: This package contains functions for carrying out instrumental variable estimation of causal effects and power analyses for instrumental variable studies.
Author: Dylan Small
Maintainer: Dylan Small
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/anderson.rubin.ci.R | 6 +++---
3 files changed, 8 insertions(+), 8 deletions(-)
Title: Visualisation of sequential probability distributions using fan
charts.
Diff between fanplot versions 3.0 dated 2014-02-01 and 3.1 dated 2014-03-21
Description: Visualise sequential distributions using a range of plotting styles. Sequential distribution data can be input as either simulations or values corresponding to percentiles over time (columns). Plots are added to existing graphic devices using the fan function. Users can choose from four different styles, including fan chart type plots, where a set of coloured polygon, with shadings corresponding to the percentile values are layered to represent different uncertainty levels.
Author: Guy J. Abel
Maintainer: "Guy J. Abel"
DESCRIPTION | 6 -
MD5 | 16 +--
R/fan.R | 47 +++++----
R/fanplot-internal.R | 250 +++++++++++++++++++++++++--------------------------
data/boe.rda |binary
data/cpi.rda |binary
data/ips.rda |binary
data/th.mcmc.rda |binary
man/fan.Rd | 13 +-
9 files changed, 168 insertions(+), 164 deletions(-)
Title: Effect Displays for Linear, Generalized Linear,
Multinomial-Logit, Proportional-Odds Logit Models and
Mixed-Effects Models
Diff between effects versions 2.3-0 dated 2013-11-07 and 3.0-0 dated 2014-03-21
Description:
Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb]
Maintainer: John Fox
DESCRIPTION | 12
MD5 | 36
NAMESPACE | 6
NEWS | 6
R/Effect.R | 170 ++++
R/Effect.mlm.R | 30
R/plot-methods.R | 1761 +++++++++++++++++++++++++++++++----------------
R/utilities.R | 316 ++++++--
data/Arrests.rda |binary
data/BEPS.rda |binary
data/Cowles.rda |binary
data/Hartnagel.rda |binary
data/Prestige.rda |binary
data/TitanicSurvival.rda |binary
data/WVS.rda |binary
data/Wells.rda |binary
man/effect.Rd | 189 +++--
man/effects-package.Rd | 10
man/summary.effect.Rd | 59 +
19 files changed, 1803 insertions(+), 792 deletions(-)
Title: Séries temporelles avec R - Méthodes et cas
Diff between caschrono versions 1.3 dated 2011-11-22 and 1.4 dated 2014-03-21
Description: Functions, data sets and exercises solutions for the book 'Séries temporelles avec R - Méthodes et cas' (Yves Aragon, Springer, 2011). For all chapters, a vignette is available with some additional material and exercises solutions.
Author: Yves Aragon
Maintainer: Thibault Laurent
caschrono-1.3/caschrono/caschrono-Ex.R |only
caschrono-1.3/caschrono/inst/doc/Anx1.tex |only
caschrono-1.3/caschrono/inst/doc/Figures |only
caschrono-1.3/caschrono/inst/doc/Sweave.sty |only
caschrono-1.3/caschrono/inst/doc/pratiquer.sty |only
caschrono-1.4/caschrono/DESCRIPTION | 9 +-
caschrono-1.4/caschrono/MD5 | 89 ++++++++++++-------------
caschrono-1.4/caschrono/NAMESPACE |only
caschrono-1.4/caschrono/build |only
caschrono-1.4/caschrono/data/champa.ts.rda |binary
caschrono-1.4/caschrono/data/khct.rda |binary
caschrono-1.4/caschrono/data/lait.rda |binary
caschrono-1.4/caschrono/data/m30.rda |binary
caschrono-1.4/caschrono/data/popfr.rda |binary
caschrono-1.4/caschrono/data/trafmensu.rda |binary
caschrono-1.4/caschrono/inst/doc/Anx1.R |only
caschrono-1.4/caschrono/inst/doc/Anx1.pdf |binary
caschrono-1.4/caschrono/inst/doc/Anx10.R |only
caschrono-1.4/caschrono/inst/doc/Anx10.pdf |binary
caschrono-1.4/caschrono/inst/doc/Anx12.R |only
caschrono-1.4/caschrono/inst/doc/Anx12.pdf |binary
caschrono-1.4/caschrono/inst/doc/Anx2.R |only
caschrono-1.4/caschrono/inst/doc/Anx2.pdf |binary
caschrono-1.4/caschrono/inst/doc/Anx3.R |only
caschrono-1.4/caschrono/inst/doc/Anx3.pdf |binary
caschrono-1.4/caschrono/inst/doc/Anx4.R |only
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caschrono-1.4/caschrono/inst/doc/Anx7.R |only
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caschrono-1.4/caschrono/inst/doc/Anx9.R |only
caschrono-1.4/caschrono/inst/doc/Anx9.pdf |binary
caschrono-1.4/caschrono/man/armaselect.rd | 10 +-
caschrono-1.4/caschrono/man/cor.arma.rd | 10 +-
caschrono-1.4/caschrono/man/plotacfthemp.rd | 10 +-
caschrono-1.4/caschrono/vignettes |only
39 files changed, 62 insertions(+), 66 deletions(-)
Title: Text Analysis Utilities
Diff between tau versions 0.0-16 dated 2014-02-11 and 0.0-17 dated 2014-03-21
Description: Utilities for text analysis
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre],
Ingo Feinerer [aut],
David Meyer [aut]
Maintainer: Kurt Hornik
CHANGELOG | 8 +++++---
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
R/readers.R | 26 ++++++++++++++++++++++++--
R/sysdata.rda |binary
5 files changed, 36 insertions(+), 12 deletions(-)
Title: Miscellaneous functions for finance / credit risk analysts
Diff between optiRum versions 0.21 dated 2014-02-25 and 0.30 dated 2014-03-21
Description: This packages fills the gaps credit analysts and loan modellers at
Optimum Credit identify in the existing R code body.
It allows for the production of documentation with less coding,
replicates a number of Microsoft Excel functions useful for
modelling loans (without rounding), and other helpful functions
for producing scorecards and outputting the results.
Author: Stephanie Locke [aut, cre]
Maintainer: Stephanie Locke
DESCRIPTION | 9 ++-
MD5 | 22 ++++++---
NAMESPACE | 4 +
NEWS |only
R/generatePDF.R | 49 ++++++++++----------
R/pounds.R |only
R/sanitise.R | 1
R/thousands.R |only
man/generatePDF.Rd | 19 +++++---
man/pounds_format.Rd |only
man/thousands_format.Rd |only
tests/testthat/datatabletest.Rnw |only
tests/testthat/datatabletest.pdf |only
tests/testthat/test-formatters.R |only
tests/testthat/test-generatePDF.R | 90 +++++++++++++++++++++++++++++++++++---
tests/testthat/test-sanitise.R | 1
16 files changed, 150 insertions(+), 45 deletions(-)
Title: A Fast Parameter Estimation Method for Evolutionary Biology
Diff between jaatha versions 2.2 dated 2013-12-10 and 2.3 dated 2014-03-21
Description: Jaatha is a composite likelihood method for inferring evolutionary
parameters using genetic data. Given a model of the evolutionary history of
two biological populations as well as SNP data from multiple individuals
from each population, it estimates model parameters like the time of
separation of both species.
Author: Lisha Mathew, Paul R. Staab and Dirk Metzler
Maintainer: Paul R. Staab
jaatha-2.2/jaatha/R/aaa_SimProgram.R |only
jaatha-2.2/jaatha/inst/doc/custom_simulator_howto.R |only
jaatha-2.2/jaatha/inst/doc/jaatha_howto.R |only
jaatha-2.2/jaatha/inst/integrationTests/doRUnit.R |only
jaatha-2.2/jaatha/inst/integrationTests/results |only
jaatha-2.2/jaatha/inst/integrationTests/samples.save |only
jaatha-2.2/jaatha/src/Makevars |only
jaatha-2.2/jaatha/src/Makevars.win |only
jaatha-2.3/jaatha/DESCRIPTION | 24
jaatha-2.3/jaatha/MD5 | 136 ++--
jaatha-2.3/jaatha/NAMESPACE | 25
jaatha-2.3/jaatha/NEWS | 16
jaatha-2.3/jaatha/R/DemographicModel.R | 283 +++++++++-
jaatha-2.3/jaatha/R/Jaatha.R | 59 +-
jaatha-2.3/jaatha/R/fit_glm.R | 10
jaatha-2.3/jaatha/R/refined_search.R | 164 ++---
jaatha-2.3/jaatha/R/sim_program.R |only
jaatha-2.3/jaatha/R/sim_program_ms.R | 158 ++++-
jaatha-2.3/jaatha/R/sim_program_seqgen.R | 73 +-
jaatha-2.3/jaatha/build |only
jaatha-2.3/jaatha/inst/doc/custom_simulator_howto.pdf |binary
jaatha-2.3/jaatha/inst/doc/jaatha_howto.pdf |binary
jaatha-2.3/jaatha/inst/integrationTests/it.sim_prog_seqgen.R | 29 -
jaatha-2.3/jaatha/inst/unitTests/runit.dm-ms.R | 96 +++
jaatha-2.3/jaatha/inst/unitTests/runit.dm-seqgen.R | 9
jaatha-2.3/jaatha/inst/unitTests/runit.dm.R | 169 +++++
jaatha-2.3/jaatha/inst/unitTests/runit.fit_glm.R | 8
jaatha-2.3/jaatha/inst/unitTests/runit.jaatha.R | 11
jaatha-2.3/jaatha/inst/unitTests/runit.simulate_within_block.R | 14
jaatha-2.3/jaatha/inst/unitTests/test_setup.R | 19
jaatha-2.3/jaatha/inst/unitTests/test_setup.Rda |binary
jaatha-2.3/jaatha/man/Jaatha-class.Rd | 52 -
jaatha-2.3/jaatha/man/Jaatha.confidenceIntervals.Rd | 29 -
jaatha-2.3/jaatha/man/Jaatha.getLikelihoods.Rd | 10
jaatha-2.3/jaatha/man/Jaatha.getStartingPoints.Rd | 8
jaatha-2.3/jaatha/man/Jaatha.initialSearch.Rd | 21
jaatha-2.3/jaatha/man/Jaatha.initialize.Rd | 14
jaatha-2.3/jaatha/man/Jaatha.refinedSearch.Rd | 33 -
jaatha-2.3/jaatha/man/Jaatha.setSeqgenExecutable.Rd | 4
jaatha-2.3/jaatha/man/addFeature.Rd | 13
jaatha-2.3/jaatha/man/calculateJsfs.Rd | 15
jaatha-2.3/jaatha/man/callMs.Rd | 6
jaatha-2.3/jaatha/man/checkType.Rd | 8
jaatha-2.3/jaatha/man/convertSimResultsToDataFrame.Rd | 8
jaatha-2.3/jaatha/man/denormalize.Rd | 10
jaatha-2.3/jaatha/man/dm.addGrowth.Rd | 35 -
jaatha-2.3/jaatha/man/dm.addMigration.Rd | 50 -
jaatha-2.3/jaatha/man/dm.addMutation.Rd | 20
jaatha-2.3/jaatha/man/dm.addMutationRateHeterogenity.Rd | 52 -
jaatha-2.3/jaatha/man/dm.addOutgroup.Rd | 12
jaatha-2.3/jaatha/man/dm.addParameter.Rd | 11
jaatha-2.3/jaatha/man/dm.addRecombination.Rd | 31 -
jaatha-2.3/jaatha/man/dm.addSampleSize.Rd |only
jaatha-2.3/jaatha/man/dm.addSizeChange.Rd | 22
jaatha-2.3/jaatha/man/dm.addSpeciationEvent.Rd | 31 -
jaatha-2.3/jaatha/man/dm.addSymmetricMigration.Rd | 15
jaatha-2.3/jaatha/man/dm.createDemographicModel.Rd | 12
jaatha-2.3/jaatha/man/dm.createThetaTauModel.Rd | 7
jaatha-2.3/jaatha/man/dm.getGroups.Rd |only
jaatha-2.3/jaatha/man/dm.getLociLength.Rd |only
jaatha-2.3/jaatha/man/dm.getLociNumber.Rd |only
jaatha-2.3/jaatha/man/dm.setLociLength.Rd |only
jaatha-2.3/jaatha/man/dm.setLociNumber.Rd |only
jaatha-2.3/jaatha/man/dm.setMutationModel.Rd | 23
jaatha-2.3/jaatha/man/dm.simSumStats.Rd | 10
jaatha-2.3/jaatha/man/findBestParInBlock.Rd | 10
jaatha-2.3/jaatha/man/fitGlm.Rd | 10
jaatha-2.3/jaatha/man/fitGlmPoiTransformed.Rd | 9
jaatha-2.3/jaatha/man/fitPoiSmoothed.Rd | 8
jaatha-2.3/jaatha/man/getLogFile.Rd | 4
jaatha-2.3/jaatha/man/getLogLevel.Rd | 4
jaatha-2.3/jaatha/man/jaatha-package.Rd | 20
jaatha-2.3/jaatha/man/normalize.Rd | 10
jaatha-2.3/jaatha/man/runSimulations.Rd | 10
jaatha-2.3/jaatha/man/setLogging.Rd | 6
jaatha-2.3/jaatha/man/simulateWithinBlock.Rd | 10
76 files changed, 1284 insertions(+), 682 deletions(-)
Title: An interface for MIXMOD
Diff between Rmixmod versions 2.0.1 dated 2013-12-06 and 2.0.2 dated 2014-03-21
Description: Supervised and unsupervised classification with MIXture MODelling
Author: Benjamin Auder [aut, cre],
Remi Lebret [aut],
Serge Iovleff [aut],
Florent Langrognet [aut],
C. Biernacki [ctb],
G. Celeux [ctb],
G. Govaert [ctb]
Maintainer: Benjamin Auder
Rmixmod-2.0.1/Rmixmod/inst/statdoc_2_1_1.pdf |only
Rmixmod-2.0.2/Rmixmod/DESCRIPTION | 38 -
Rmixmod-2.0.2/Rmixmod/MD5 | 363 +++++-----
Rmixmod-2.0.2/Rmixmod/inst/statdoc_3_0_0.pdf |only
Rmixmod-2.0.2/Rmixmod/src/LearnOutputHandling.cpp | 6
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringInput.cpp | 102 ++
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringInput.h | 61 +
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringMain.cpp | 56 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringMain.h | 36
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringModelOutput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringModelOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringOutput.cpp | 80 +-
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringStrategy.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringStrategy.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringStrategyInit.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Clustering/ClusteringStrategyInit.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnInput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnInput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnMain.cpp | 36
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnMain.h | 36
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnModelOutput.cpp | 36
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnModelOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnOutput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnStrategy.cpp | 34
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Learn/LearnStrategy.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictInput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictInput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictMain.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictMain.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictModelOutput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictModelOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictOutput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictStrategy.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/DiscriminantAnalysis/Predict/PredictStrategy.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/Algo.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/Algo.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/CEMAlgo.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/CEMAlgo.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/EMAlgo.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/EMAlgo.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/MAPAlgo.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/MAPAlgo.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/MAlgo.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/MAlgo.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/SEMAlgo.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Algo/SEMAlgo.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/BICCriterion.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/BICCriterion.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/CVCriterion.cpp | 62 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/CVCriterion.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/Criterion.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/Criterion.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/CriterionOutput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/CriterionOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/ICLCriterion.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/ICLCriterion.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/NECCriterion.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Criterion/NECCriterion.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/BinaryData.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/BinaryData.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/BinarySample.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/BinarySample.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ColumnDescription.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ColumnDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/CompositeData.cpp | 36
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/CompositeData.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/CompositeSample.cpp | 26
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/CompositeSample.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Data.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Data.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/DataDescription.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/DataDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Description.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Description.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/GaussianData.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/GaussianData.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/GaussianSample.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/GaussianSample.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/IndividualColumnDescription.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/IndividualColumnDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Input.cpp | 63 +
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Input.h | 52 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Label.cpp | 63 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Label.h | 41 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/LabelDescription.cpp | 63 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/LabelDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/LikelihoodOutput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/LikelihoodOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ModelOutput.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ModelOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ParameterDescription.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ParameterDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Partition.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Partition.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Proba.cpp | 39 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Proba.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ProbaDescription.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ProbaDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ProbaOutput.cpp | 36
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/ProbaOutput.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/QualitativeColumnDescription.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/QualitativeColumnDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/QuantitativeColumnDescription.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/QuantitativeColumnDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Sample.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/Sample.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/UnusedColumnDescription.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/UnusedColumnDescription.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/WeightColumnDescription.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/IO/WeightColumnDescription.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Model/BinaryModel.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Model/BinaryModel.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Model/Model.cpp | 172 ++--
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Model/Model.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Model/ModelType.cpp | 59 +
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Model/ModelType.h | 46 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEjParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEjParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEkParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEkParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEkjParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEkjParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEkjhParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryEkjhParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/BinaryParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/CompositeParameter.cpp | 132 ++-
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/CompositeParameter.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianDiagParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianDiagParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianEDDAParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianEDDAParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianGeneralParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianGeneralParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianHDDAParameter.cpp | 127 +--
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianHDDAParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianSphericalParameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/GaussianSphericalParameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/Parameter.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Kernel/Parameter/Parameter.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/DiagMatrix.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/DiagMatrix.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/GeneralMatrix.cpp | 39 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/GeneralMatrix.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/Matrix.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/Matrix.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/SphericalMatrix.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/SphericalMatrix.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/SymmetricMatrix.cpp | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Matrix/SymmetricMatrix.h | 32
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/Error.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/Error.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/ExampleDataUtil.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/ExampleDataUtil.h | 25
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/Random.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/Random.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/Util.cpp | 39 -
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/Util.h | 50 +
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/DCVException.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/DCVException.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/DCVonlyInGaussianCaseException.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/DCVonlyInGaussianCaseException.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/ErrorEnumerations.h | 31
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/Exception.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/Exception.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/InputException.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/InputException.h | 33
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/NumericException.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/NumericException.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/OtherException.cpp | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/exceptions/OtherException.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/maths/Eigen.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/maths/NEWMAT.h | 28
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/maths/SelectLibrary.h | 24
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/maths/_ReadMe |only
Rmixmod-2.0.2/Rmixmod/src/mixmod/Utilities/mixmod.h | 8
Rmixmod-2.0.2/Rmixmod/tests/test.R | 2
184 files changed, 3756 insertions(+), 2856 deletions(-)
Title: A package for Graphical Markov Models
Diff between ggm versions 1.995-5 dated 2014-01-15 and 2.0 dated 2014-03-21
Description: Functions for analyzing and fitting Graphical Markov models
Author: Giovanni M. Marchetti, Mathias Drton, Kayvan Sadeghi
Maintainer: Giovanni M. Marchetti
DESCRIPTION | 9 ++++-----
MD5 | 6 +++---
NAMESPACE | 1 -
R/functions.R | 15 +++++++++------
4 files changed, 16 insertions(+), 15 deletions(-)
Title: Statistical methods to model and adjust for bias in
meta-analysis
Diff between copas versions 0.7-0 dated 2013-06-04 and 0.8-0 dated 2014-03-21
Description: Copas selection model.
Author: James Carpenter
Maintainer: Guido Schwarzer
copas-0.7-0/copas/COPYRIGHT |only
copas-0.7-0/copas/INDEX |only
copas-0.7-0/copas/R/crtitle.R |only
copas-0.7-0/copas/R/format.p.R |only
copas-0.7-0/copas/R/p.ci.R |only
copas-0.7-0/copas/R/rmSpace.R |only
copas-0.8-0/copas/DESCRIPTION | 11 +--
copas-0.8-0/copas/MD5 | 28 ++++----
copas-0.8-0/copas/NAMESPACE | 11 ++-
copas-0.8-0/copas/NEWS | 55 ++++++++++-------
copas-0.8-0/copas/R/forest.orbbound.R |only
copas-0.8-0/copas/R/orbbound.R |only
copas-0.8-0/copas/R/print.copas.R | 2
copas-0.8-0/copas/R/print.orbbound.R |only
copas-0.8-0/copas/R/print.summary.copas.R | 12 ++-
copas-0.8-0/copas/man/copas.Rd | 97 +++++++++++++++---------------
copas-0.8-0/copas/man/forest.orbbound.Rd |only
copas-0.8-0/copas/man/orbbound.Rd |only
copas-0.8-0/copas/man/plot.copas.Rd | 56 ++++++++---------
copas-0.8-0/copas/man/print.copas.Rd | 21 +++---
copas-0.8-0/copas/man/print.orbbound.Rd |only
21 files changed, 155 insertions(+), 138 deletions(-)
Title: Cognitive Diagnosis Modeling
Diff between CDM versions 3.0-29 dated 2014-02-26 and 3.1-14 dated 2014-03-21
Description: Functions for cognitive diagnosis modeling
and multidimensional item response modeling for dichotomous
and polytomous data. This package enables the estimation of the
DINA and DINO model, the multiple group (polytomous) GDINA model,
the multiple choice DINA model and the general diagnostic model (GDM)
which contains the multidimensional linear compensatory item response
model as a special case.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut],
Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch
DESCRIPTION | 8 ++--
MD5 | 32 +++++++++---------
R/check.input.R | 33 ++++++++++---------
R/din.R | 25 +++++++++++---
R/gdina.R | 63 +++++++++++++++++++++++++-----------
R/plot.din.R | 87 ++++++++++++++++++++++++++++++++++++---------------
R/print.din.R | 40 +++++++++++------------
R/summary.din.R | 20 ++++++++---
inst/NEWS | 13 +++++++
man/CDM-package.Rd | 30 ++++++++---------
man/data.Students.Rd | 3 -
man/data.mg.Rd | 3 -
man/din.Rd | 29 +++++++----------
man/gdina.Rd | 14 +++++++-
man/mcdina.Rd | 6 ---
man/plot.din.Rd | 15 +++-----
man/summary.din.Rd | 9 +----
17 files changed, 260 insertions(+), 170 deletions(-)
Title: Network meta-analysis with R
Diff between netmeta versions 0.4-0 dated 2014-03-07 and 0.4-1 dated 2014-03-21
Description: Network meta-analysis following methods by Rücker (2012) and Krahn et al. (2013)
Author: Gerta Rücker
Maintainer: Guido Schwarzer
DESCRIPTION | 8 ++--
MD5 | 26 ++++++-------
NEWS | 13 ++++++
R/netgraph.R | 2 -
R/netmeta.R | 80 ++++++++++++++++++++-----------------------
R/nma.krahn.R | 4 +-
R/nma.ruecker.R | 60 +++-----------------------------
R/prepare.R | 42 ++--------------------
R/print.summary.netmeta.R | 13 ++++++
R/summary.netmeta.R | 6 +--
man/as.data.frame.netmeta.Rd | 2 -
man/netgraph.Rd | 16 ++++++--
man/netmeta.Rd | 16 +++++++-
man/print.netmeta.Rd | 1
14 files changed, 126 insertions(+), 163 deletions(-)
Title: Inference in Meta Analysis and Meta Regression
Diff between metagen versions 0.1 dated 2012-11-29 and 0.2 dated 2014-03-21
Description: Provides methods for making inference in the random effects meta
regression model, such as point estimates and confidence intervals for the
heterogeneity parameter and the regression coefficients vector. Inference
method are based on different statistical approaches. Also includes tools
to run extensive simulation studies in parallel on high performance
clusters. This allows for extensive testing of current inference methods
with new and state-of-the-art methods. Functions for evaluating the
performance of both point and interval estimates are provided. Also, a
large collection of different pre-defined plotting functions is implemented
in a ready-to-use fashion.
Author: Thomas W. D. Möbius
Maintainer: Thomas W. D. Möbius
metagen-0.1/metagen/R/helpers.R |only
metagen-0.1/metagen/R/metagen.R |only
metagen-0.2/metagen/DESCRIPTION | 43 ++++--
metagen-0.2/metagen/MD5 | 91 +++++++++++++-
metagen-0.2/metagen/NAMESPACE | 79 ++++++++++++
metagen-0.2/metagen/R/example-bcg.R |only
metagen-0.2/metagen/R/methods-for-batch-distribution.R |only
metagen-0.2/metagen/R/methods-for-data-generation.R |only
metagen-0.2/metagen/R/methods-for-experiments.R |only
metagen-0.2/metagen/R/methods-for-inference.R |only
metagen-0.2/metagen/R/plot-functions.R |only
metagen-0.2/metagen/R/plot-interval-estimates.R |only
metagen-0.2/metagen/R/plot-pivotal-distributions.R |only
metagen-0.2/metagen/R/plot-point-estimates.R |only
metagen-0.2/metagen/R/zzz.R | 44 ++++++
metagen-0.2/metagen/man/bcgVaccineData.Rd |only
metagen-0.2/metagen/man/boxBias.Rd |only
metagen-0.2/metagen/man/boxByConfidence.Rd |only
metagen-0.2/metagen/man/boxByMethod.Rd |only
metagen-0.2/metagen/man/boxByType.Rd |only
metagen-0.2/metagen/man/boxMSE.Rd |only
metagen-0.2/metagen/man/boxSD.Rd |only
metagen-0.2/metagen/man/cbbPalette.Rd |only
metagen-0.2/metagen/man/cbgPalette.Rd |only
metagen-0.2/metagen/man/collectAllExperiments.Rd |only
metagen-0.2/metagen/man/collectExperiments.Rd |only
metagen-0.2/metagen/man/designB.Rd |only
metagen-0.2/metagen/man/designD.Rd |only
metagen-0.2/metagen/man/designY.Rd |only
metagen-0.2/metagen/man/dvec.Rd |only
metagen-0.2/metagen/man/experimentD.Rd |only
metagen-0.2/metagen/man/experimentY.Rd |only
metagen-0.2/metagen/man/formulaL.Rd |only
metagen-0.2/metagen/man/formulaR.Rd |only
metagen-0.2/metagen/man/hConfidence.Rd |only
metagen-0.2/metagen/man/hEstimates.Rd |only
metagen-0.2/metagen/man/intervalEstimates.Rd |only
metagen-0.2/metagen/man/joinPivotalCoefficients.Rd |only
metagen-0.2/metagen/man/joinPivotalHeterogeneity.Rd |only
metagen-0.2/metagen/man/lenBoxByMethod.Rd |only
metagen-0.2/metagen/man/lenBoxByType.Rd |only
metagen-0.2/metagen/man/lenDenByMethod.Rd |only
metagen-0.2/metagen/man/lenDenByType.Rd |only
metagen-0.2/metagen/man/makeConfInt.Rd |only
metagen-0.2/metagen/man/makeConfInts.Rd |only
metagen-0.2/metagen/man/metagen.Rd | 110 ++++++-----------
metagen-0.2/metagen/man/metagenEmpty.Rd |only
metagen-0.2/metagen/man/metagenGeneralised.Rd |only
metagen-0.2/metagen/man/metareg.Rd |only
metagen-0.2/metagen/man/performance.Rd |only
metagen-0.2/metagen/man/performanceConfH.Rd |only
metagen-0.2/metagen/man/performanceConfR.Rd |only
metagen-0.2/metagen/man/performancePointH.Rd |only
metagen-0.2/metagen/man/performancePointR.Rd |only
metagen-0.2/metagen/man/pfunc.Rd |only
metagen-0.2/metagen/man/pivotalStream.Rd |only
metagen-0.2/metagen/man/plotCoefficientInterval.Rd |only
metagen-0.2/metagen/man/plotDensityH.Rd |only
metagen-0.2/metagen/man/plotDensityH2.Rd |only
metagen-0.2/metagen/man/plotDensityIntercept.Rd |only
metagen-0.2/metagen/man/plotDensityIntercept2.Rd |only
metagen-0.2/metagen/man/plotDensitySlope.Rd |only
metagen-0.2/metagen/man/plotDensitySlope2.Rd |only
metagen-0.2/metagen/man/plotHeterogeneityInterval.Rd |only
metagen-0.2/metagen/man/plotIntervalEstimates.Rd |only
metagen-0.2/metagen/man/plotStudyForest.Rd |only
metagen-0.2/metagen/man/plotStudyQfuncPfunc.Rd |only
metagen-0.2/metagen/man/plotStudySizes.Rd |only
metagen-0.2/metagen/man/plotStudyUnbalance.Rd |only
metagen-0.2/metagen/man/qfunc.Rd |only
metagen-0.2/metagen/man/rB.Rd |only
metagen-0.2/metagen/man/rBinomGauss.Rd |only
metagen-0.2/metagen/man/rD.Rd |only
metagen-0.2/metagen/man/rY.Rd |only
metagen-0.2/metagen/man/regressionEstimates.Rd |only
metagen-0.2/metagen/man/render.Rd |only
metagen-0.2/metagen/man/renderSVG.Rd |only
metagen-0.2/metagen/man/sctBias.Rd |only
metagen-0.2/metagen/man/sctMSE.Rd |only
metagen-0.2/metagen/man/sctSD.Rd |only
metagen-0.2/metagen/man/sctVersusC.Rd |only
metagen-0.2/metagen/man/sctVersusH.Rd |only
metagen-0.2/metagen/man/sdmByMethod.Rd |only
metagen-0.2/metagen/man/sdmByType.Rd |only
metagen-0.2/metagen/man/sdsByMethod.Rd |only
metagen-0.2/metagen/man/sdsByType.Rd |only
metagen-0.2/metagen/man/setupExperiment.Rd |only
metagen-0.2/metagen/man/yvec.Rd |only
88 files changed, 280 insertions(+), 87 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-08 1.1
2011-06-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-27 0.7-3
2009-11-23 0.7-1
2009-03-11 0.6.2
2009-03-10 0.6.1
2009-02-23 0.5.2.1
2008-05-29 0.5.2
2008-05-27 0.5.1
2008-05-25 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-10 2014.3-5
2013-10-18 0.1-2
2013-09-09 0.1-1
Title: Power in a Group Sequential Design
Diff between PwrGSD versions 1.172 dated 2014-03-14 and 2.000 dated 2014-03-21
Description: Tools the evaluation of interim analysis plans for sequentially
monitored trials on a survival endpoint; tools to construct efficacy and
futility boundaries, for deriving power of a sequential design at a specified
alternative, template for evaluating the performance of candidate plans at a
set of time varying alternatives.
Author: Grant Izmirlian
Maintainer: Grant Izmirlian
DESCRIPTION | 6 ++--
MD5 | 12 ++++-----
R/PwrGSD.R | 70 ++++++++++++++++++++++++++++----------------------------
src/AsyPwrGSD.c | 9 ++++---
src/drift.c | 45 ++++++++++++++++++++++++------------
src/driftfu.c | 46 ++++++++++++++++++++----------------
src/htilde.c | 64 ++++++++++++++++++++++++++++-----------------------
7 files changed, 141 insertions(+), 111 deletions(-)
Title: Tools to determine DNA profile evidence.
Diff between likeLTD versions 5.3.0 dated 2014-03-16 and 5.3.1 dated 2014-03-21
Description: Tools to determine DNA profile Weight of Evidence.
For further information see the likeLTD guide at the URL provided,
or the paper under citation.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele
DESCRIPTION | 6 +--
MD5 | 8 ++--
R/reports.R | 87 +++++++++++++++++++++++++++++++---------------
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Title: Extreme Bounds Analysis (EBA)
Diff between ExtremeBounds versions 0.1.2 dated 2014-02-09 and 0.1.3 dated 2014-03-21
Description: An implementation of Extreme Bounds Analysis (EBA), a global sensitivity analysis that examines the robustness of determinants in regression models. The package supports both Leamer's and Sala-i-Martin's versions of EBA, and allows users to customize all aspects of the analysis.
Author: Marek Hlavac
Maintainer: Marek Hlavac
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