Title: Functions to create and manipulate discrete random variables
Diff between discreteRV versions 1.0.1 dated 2013-06-26 and 1.1 dated 2014-04-01
Description: discreteRV implements a set of functions that allow computations
involving discrete random variables. It uses a syntax which is familiar to
that which is used in mathematical statistics and probability courses.
Author: Andreas Buja
Maintainer: Eric Hare
DESCRIPTION | 17 -
MD5 | 55 +++--
NAMESPACE | 13 +
R/discreteRV-Probabilities.r | 411 +++++++++++++++++++++++++++++++++----------
R/discreteRV-Simulations.r | 4
man/Conditional.Rd |only
man/E.Rd | 6
man/KURT.Rd | 4
man/P.Rd | 11 -
man/Prop.Rd | 6
man/SD.Rd | 4
man/SKEW.Rd | 4
man/SofI.Rd | 16 -
man/SofIID.Rd | 16 -
man/V.Rd | 4
man/as.RV.Rd | 9
man/grapes-AND-grapes.Rd |only
man/grapes-OR-grapes.Rd |only
man/make.RV.Rd | 32 ++-
man/margins.Rd | 12 -
man/mult.Rd | 24 --
man/multN.Rd | 22 --
man/plot.RV.Rd | 24 --
man/plot.RVsim.Rd | 4
man/print.RV.Rd | 22 +-
man/probs.Rd | 23 --
man/props.Rd | 8
man/qqnorm.RV.Rd | 14 -
man/rsim.Rd | 6
man/skewSim.Rd | 4
30 files changed, 497 insertions(+), 278 deletions(-)
Title: classes and methods for spatio-temporal data
Diff between spacetime versions 1.0-9 dated 2013-09-09 and 1.1-0 dated 2014-04-01
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal combining or aggregating, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [cre, aut],
Benedikt Graeler [ctb],
Tom Gottfried [ctb],
Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma
spacetime-1.0-9/spacetime/data/datalist |only
spacetime-1.0-9/spacetime/tests/Examples |only
spacetime-1.0-9/spacetime/tests/traj.R |only
spacetime-1.0-9/spacetime/tests/traj.Rout.save |only
spacetime-1.1-0/spacetime/DESCRIPTION | 25 -
spacetime-1.1-0/spacetime/MD5 | 79 +--
spacetime-1.1-0/spacetime/NAMESPACE | 10
spacetime-1.1-0/spacetime/R/Class-ST.R | 3
spacetime-1.1-0/spacetime/R/Class-STFDF.R | 3
spacetime-1.1-0/spacetime/R/Class-STIDF.R | 3
spacetime-1.1-0/spacetime/R/Class-STSDF.R | 6
spacetime-1.1-0/spacetime/R/Class-STTDF.R | 6
spacetime-1.1-0/spacetime/R/ST-methods.R | 24 -
spacetime-1.1-0/spacetime/R/STFDF-methods.R | 134 ++++-
spacetime-1.1-0/spacetime/R/STIDF-methods.R | 85 +++
spacetime-1.1-0/spacetime/R/STSDF-methods.R | 349 ++++++++------
spacetime-1.1-0/spacetime/R/STTDF-methods.R | 8
spacetime-1.1-0/spacetime/R/aggregate.R | 53 +-
spacetime-1.1-0/spacetime/R/coerce.R | 26 -
spacetime-1.1-0/spacetime/R/over.R | 3
spacetime-1.1-0/spacetime/R/plot.R | 2
spacetime-1.1-0/spacetime/R/stplot.R | 22
spacetime-1.1-0/spacetime/TODO |only
spacetime-1.1-0/spacetime/build |only
spacetime-1.1-0/spacetime/data/air.rda |binary
spacetime-1.1-0/spacetime/data/fires.rda |binary
spacetime-1.1-0/spacetime/inst/ChangeLog | 432 ++++++++++++++++++
spacetime-1.1-0/spacetime/inst/doc/jss816.pdf |binary
spacetime-1.1-0/spacetime/inst/doc/sto.pdf |binary
spacetime-1.1-0/spacetime/inst/doc/stpg.pdf |binary
spacetime-1.1-0/spacetime/inst/doc/stsubs.R |only
spacetime-1.1-0/spacetime/inst/doc/stsubs.Rnw |only
spacetime-1.1-0/spacetime/inst/doc/stsubs.pdf |only
spacetime-1.1-0/spacetime/man/ST-class.Rd | 1
spacetime-1.1-0/spacetime/man/STFDF-class.Rd | 4
spacetime-1.1-0/spacetime/man/STIDF-class.Rd | 3
spacetime-1.1-0/spacetime/man/STSDF-class.Rd | 4
spacetime-1.1-0/spacetime/man/STTDF-class.Rd | 1
spacetime-1.1-0/spacetime/man/stbox.Rd |only
spacetime-1.1-0/spacetime/man/stinteraction.Rd | 2
spacetime-1.1-0/spacetime/man/stplot.Rd | 16
spacetime-1.1-0/spacetime/tests/basic.Rout.save | 6
spacetime-1.1-0/spacetime/tests/stconstruct.Rout.save | 17
spacetime-1.1-0/spacetime/tests/subsetting.R |only
spacetime-1.1-0/spacetime/tests/subsetting.Rout.save |only
spacetime-1.1-0/spacetime/tests/wind.Rout.save | 10
spacetime-1.1-0/spacetime/vignettes/stsubs.Rnw |only
47 files changed, 987 insertions(+), 350 deletions(-)
Title: An R interface to the web API of Statistics Sweden
Diff between sweSCB versions 0.3 dated 2014-03-09 and 0.3.3 dated 2014-04-01
Description: Interface for the REST API of Statistics Sweden. The
package offers methods to fetch information about the data hierarchy stored
behind the API; extract metadata; fetch actual data; and clean up the
results.
Author: Love Hansson, Thomas Reinholdsson, M{\aa}ns Magnusson
Maintainer: M{\aa}ns Magnusson
DESCRIPTION | 16 ++--
MD5 | 38 +++++-----
NAMESPACE | 1
R/findData.R | 14 +++
R/getData.R | 147 ++++++++++++++++++++++-------------------
R/sweSCB.R | 5 -
inst/tests/tests_findData.R | 34 +++++----
inst/tests/tests_getMetadata.R | 19 +++++
inst/tests/tests_scbGetData.R |only
man/baseURL.Rd | 4 -
man/buildPath.Rd | 6 -
man/checkForLevels.Rd | 6 -
man/deparseLevels.Rd | 4 -
man/findData.Rd | 10 +-
man/getContent.Rd | 4 -
man/scbGetData.Rd | 30 ++++----
man/scbGetDims.Rd | 8 +-
man/scbGetLevels.Rd | 6 -
man/scbGetMetadata.Rd | 8 +-
man/sweSCB.Rd | 2
tests |only
21 files changed, 209 insertions(+), 153 deletions(-)
Title: Simulation of ordinal and discrete variables with given
correlation matrix and marginal distributions
Diff between GenOrd versions 1.1.0 dated 2013-05-17 and 1.2.0 dated 2014-04-01
Description: The package implements a procedure for generating samples
from ordinal/discrete random variables with pre-specified
correlation matrix and marginal distributions.
Author: Alessandro Barbiero, Pier Alda Ferrari
Maintainer: Alessandro Barbiero
GenOrd-1.1.0/GenOrd/doc |only
GenOrd-1.2.0/GenOrd/DESCRIPTION | 8 -
GenOrd-1.2.0/GenOrd/MD5 | 13 --
GenOrd-1.2.0/GenOrd/NAMESPACE | 3
GenOrd-1.2.0/GenOrd/R/ordcont.R | 181 ++++++++++++------------------
GenOrd-1.2.0/GenOrd/man/GenOrd-package.Rd | 4
GenOrd-1.2.0/GenOrd/man/contord.Rd | 6
GenOrd-1.2.0/GenOrd/man/ordcont.Rd | 11 +
8 files changed, 102 insertions(+), 124 deletions(-)
Title: Distributed Lag Non-linear Models
Diff between dlnm versions 2.0.6 dated 2013-10-17 and 2.0.9 dated 2014-04-01
Description: The package dlnm contains functions to specify and run distributed lag linear and non-linear models.
Author: Antonio Gasparrini and Ben Armstrong
Maintainer: Antonio Gasparrini
dlnm-2.0.6/dlnm/R/Lag.R |only
dlnm-2.0.6/dlnm/R/checkgroup.R |only
dlnm-2.0.6/dlnm/R/crossplot.R |only
dlnm-2.0.6/dlnm/R/mkbasis.R |only
dlnm-2.0.6/dlnm/R/mklagbasis.R |only
dlnm-2.0.6/dlnm/R/old.R |only
dlnm-2.0.6/dlnm/R/seq.R |only
dlnm-2.0.9/dlnm/DESCRIPTION | 8 -
dlnm-2.0.9/dlnm/MD5 | 120 +++++++++++++--------------
dlnm-2.0.9/dlnm/NAMESPACE | 8 -
dlnm-2.0.9/dlnm/R/Lag2.R |only
dlnm-2.0.9/dlnm/R/check.R |only
dlnm-2.0.9/dlnm/R/coef.crosspred.R | 2
dlnm-2.0.9/dlnm/R/coef.crossreduce.R | 2
dlnm-2.0.9/dlnm/R/crossbasis.R | 14 +--
dlnm-2.0.9/dlnm/R/crosspred.R | 22 ++--
dlnm-2.0.9/dlnm/R/crossreduce.R | 18 ++--
dlnm-2.0.9/dlnm/R/equalknots.R | 4
dlnm-2.0.9/dlnm/R/exphist.R | 10 +-
dlnm-2.0.9/dlnm/R/fci.R | 4
dlnm-2.0.9/dlnm/R/get.R | 8 -
dlnm-2.0.9/dlnm/R/integer.R | 4
dlnm-2.0.9/dlnm/R/lin.R | 4
dlnm-2.0.9/dlnm/R/lines.crosspred.R | 14 +--
dlnm-2.0.9/dlnm/R/lines.crossreduce.R | 8 -
dlnm-2.0.9/dlnm/R/logknots.R | 6 -
dlnm-2.0.9/dlnm/R/mklag.R | 4
dlnm-2.0.9/dlnm/R/onAttach.R | 4
dlnm-2.0.9/dlnm/R/onebasis.R | 6 -
dlnm-2.0.9/dlnm/R/plot.crosspred.R | 18 ++--
dlnm-2.0.9/dlnm/R/plot.crossreduce.R | 8 -
dlnm-2.0.9/dlnm/R/points.crosspred.R | 14 +--
dlnm-2.0.9/dlnm/R/points.crossreduce.R | 8 -
dlnm-2.0.9/dlnm/R/poly.R | 4
dlnm-2.0.9/dlnm/R/seqlag.R |only
dlnm-2.0.9/dlnm/R/strata.R | 22 +++-
dlnm-2.0.9/dlnm/R/summary.crossbasis.R | 64 +++++++-------
dlnm-2.0.9/dlnm/R/summary.crosspred.R | 4
dlnm-2.0.9/dlnm/R/summary.crossreduce.R | 4
dlnm-2.0.9/dlnm/R/summary.onebasis.R | 48 +++++-----
dlnm-2.0.9/dlnm/R/thr.R | 4
dlnm-2.0.9/dlnm/R/vcov.crosspred.R | 2
dlnm-2.0.9/dlnm/R/vcov.crossreduce.R | 2
dlnm-2.0.9/dlnm/build/vignette.rds |binary
dlnm-2.0.9/dlnm/inst/ChangeLog | 25 +++++
dlnm-2.0.9/dlnm/inst/doc/dlnmExtended.Rnw | 8 -
dlnm-2.0.9/dlnm/inst/doc/dlnmExtended.pdf |binary
dlnm-2.0.9/dlnm/inst/doc/dlnmOverview.R | 6 -
dlnm-2.0.9/dlnm/inst/doc/dlnmOverview.Rnw | 26 ++---
dlnm-2.0.9/dlnm/inst/doc/dlnmOverview.pdf |binary
dlnm-2.0.9/dlnm/inst/doc/dlnmTS.pdf |binary
dlnm-2.0.9/dlnm/man/crossbasis.Rd | 2
dlnm-2.0.9/dlnm/man/crosspred.Rd | 2
dlnm-2.0.9/dlnm/man/dlnm-internal.Rd | 46 +++++-----
dlnm-2.0.9/dlnm/man/dlnm-package.Rd | 4
dlnm-2.0.9/dlnm/man/exphist.Rd | 2
dlnm-2.0.9/dlnm/man/integer.Rd | 2
dlnm-2.0.9/dlnm/man/lin.Rd | 2
dlnm-2.0.9/dlnm/man/onebasis.Rd | 6 -
dlnm-2.0.9/dlnm/man/plot.crosspred.Rd | 4
dlnm-2.0.9/dlnm/man/poly.Rd | 10 +-
dlnm-2.0.9/dlnm/man/strata.Rd | 16 ++-
dlnm-2.0.9/dlnm/man/thr.Rd | 8 +
dlnm-2.0.9/dlnm/vignettes/biblioVignette.bib | 8 +
dlnm-2.0.9/dlnm/vignettes/dlnmExtended.Rnw | 8 -
dlnm-2.0.9/dlnm/vignettes/dlnmOverview.Rnw | 26 ++---
66 files changed, 360 insertions(+), 323 deletions(-)
Title: Radiocarbon dating, age-depth modelling, relative sea level rate
estimation, and non-parametric phase modelling
Diff between Bchron versions 3.2 dated 2013-04-23 and 4.0 dated 2014-04-01
Description: This package enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine the activity of a site (and as an alternative to the Oxcal function SUM).
Author: Andrew Parnell
Maintainer: Andrew Parnell
Bchron-3.2/Bchron/R/BchronMCMC.R |only
Bchron-3.2/Bchron/R/BchronRSLplot.R |only
Bchron-3.2/Bchron/R/Bchroncalibrate.R |only
Bchron-3.2/Bchron/R/Bchroncheck.R |only
Bchron-3.2/Bchron/R/Bchronconvergecheck.R |only
Bchron-3.2/Bchron/R/Bchroncreatecalcurve.R |only
Bchron-3.2/Bchron/R/Bchronload.R |only
Bchron-3.2/Bchron/R/Bchronmenu.R |only
Bchron-3.2/Bchron/R/Bchronplot.R |only
Bchron-3.2/Bchron/R/Bchronplotevent.R |only
Bchron-3.2/Bchron/R/Bchronpredict.R |only
Bchron-3.2/Bchron/R/Bchronpredictevent.R |only
Bchron-3.2/Bchron/R/Bchronproxyplot.R |only
Bchron-3.2/Bchron/R/QuickCal.R |only
Bchron-3.2/Bchron/R/hdr2.den.R |only
Bchron-3.2/Bchron/R/print.Bchron.R |only
Bchron-3.2/Bchron/R/summary.Bchron.R |only
Bchron-3.2/Bchron/man/BchronMCMC.Rd |only
Bchron-3.2/Bchron/man/BchronRSLplot.Rd |only
Bchron-3.2/Bchron/man/Bchroncalibrate.Rd |only
Bchron-3.2/Bchron/man/Bchroncheck.Rd |only
Bchron-3.2/Bchron/man/Bchronconvergecheck.Rd |only
Bchron-3.2/Bchron/man/Bchroncreatecalcurve.Rd |only
Bchron-3.2/Bchron/man/Bchronload.Rd |only
Bchron-3.2/Bchron/man/Bchronmenu.Rd |only
Bchron-3.2/Bchron/man/Bchronplot.Rd |only
Bchron-3.2/Bchron/man/Bchronplotevent.Rd |only
Bchron-3.2/Bchron/man/Bchronpredict.Rd |only
Bchron-3.2/Bchron/man/Bchronpredictevent.Rd |only
Bchron-3.2/Bchron/man/Bchronproxyplot.Rd |only
Bchron-3.2/Bchron/man/Quickcal.Rd |only
Bchron-3.2/Bchron/man/print.Bchron.Rd |only
Bchron-3.2/Bchron/man/summary.Bchron.Rd |only
Bchron-3.2/Bchron/src |only
Bchron-4.0/Bchron/DESCRIPTION | 32 +----
Bchron-4.0/Bchron/MD5 | 91 ++++++++---------
Bchron-4.0/Bchron/NAMESPACE | 21 +++
Bchron-4.0/Bchron/R/BchronCalibrate.R |only
Bchron-4.0/Bchron/R/BchronDensity.R |only
Bchron-4.0/Bchron/R/BchronDensityFast.R |only
Bchron-4.0/Bchron/R/BchronRSL.R | 44 +++-----
Bchron-4.0/Bchron/R/Bchronology.R |only
Bchron-4.0/Bchron/R/plot.BchronCalibratedDates.R |only
Bchron-4.0/Bchron/R/plot.BchronDensityRun.R |only
Bchron-4.0/Bchron/R/plot.BchronDensityRunFast.R |only
Bchron-4.0/Bchron/R/plot.BchronRSLRun.R |only
Bchron-4.0/Bchron/R/plot.BchronologyRun.R |only
Bchron-4.0/Bchron/R/summary.BchronCalibratedDates.R |only
Bchron-4.0/Bchron/R/summary.BchronRSLRun.R |only
Bchron-4.0/Bchron/R/summary.BchronologyRun.R |only
Bchron-4.0/Bchron/R/zzz.R | 8 -
Bchron-4.0/Bchron/data |only
Bchron-4.0/Bchron/man/Bchron-package.Rd | 79 +-------------
Bchron-4.0/Bchron/man/BchronCalibrate.Rd |only
Bchron-4.0/Bchron/man/BchronDensity.Rd |only
Bchron-4.0/Bchron/man/BchronDensityFast.Rd |only
Bchron-4.0/Bchron/man/BchronRSL.Rd | 84 ++++++++-------
Bchron-4.0/Bchron/man/Bchronology.Rd |only
Bchron-4.0/Bchron/man/Glendalough.Rd |only
Bchron-4.0/Bchron/man/Sluggan.Rd |only
Bchron-4.0/Bchron/man/TestChronData.Rd |only
Bchron-4.0/Bchron/man/TestRSLdata.Rd |only
Bchron-4.0/Bchron/man/intcal13.Rd |only
Bchron-4.0/Bchron/man/marine13.Rd |only
Bchron-4.0/Bchron/man/normal.Rd |only
Bchron-4.0/Bchron/man/plot.BchronCalibratedDates.Rd |only
Bchron-4.0/Bchron/man/plot.BchronDensityRun.Rd |only
Bchron-4.0/Bchron/man/plot.BchronDensityRunFast.Rd |only
Bchron-4.0/Bchron/man/plot.BchronRSLRun.Rd |only
Bchron-4.0/Bchron/man/plot.BchronologyRun.Rd |only
Bchron-4.0/Bchron/man/shcal13.Rd |only
Bchron-4.0/Bchron/man/summary.BchronCalibratedDates.Rd |only
Bchron-4.0/Bchron/man/summary.BchronRSLRun.Rd |only
Bchron-4.0/Bchron/man/summary.BchronologyRun.Rd |only
74 files changed, 145 insertions(+), 214 deletions(-)
Title: Methods for statistical disclosure control in tabular data
Diff between sdcTable versions 0.13.0 dated 2014-03-14 and 0.14.0 dated 2014-04-01
Description: Implementation of methods for statistical disclosure control in
tabular data
Author: Bernhard Meindl
Maintainer: Bernhard Meindl
DESCRIPTION | 15
MD5 | 67
NAMESPACE | 107
R/classes.r | 717 +++---
R/export_functions.r | 1916 +++++++++--------
R/generics_sdcProblem.r | 343 +--
R/helper_functions.r | 1207 +++++------
R/methods_class_cutList.r | 258 +-
R/methods_class_dataObj.r | 270 +-
R/methods_class_dimInfo.r | 64
R/methods_class_dimVar.r | 800 +++----
R/methods_class_linProb.r | 402 +--
R/methods_class_problemInstance.r | 412 +--
R/methods_class_safeObj.r | 246 +-
R/methods_class_sdcProblem.r | 4086 +++++++++++++++++++-------------------
R/methods_class_simpleTriplet.r | 674 +++---
R/methods_multiple_classes.r | 737 +++---
R/zzz.r | 2
README.md | 4
data/microData1.RData |binary
data/problem.RData |binary
data/problemWithSupps.RData |binary
data/protectedData.RData |binary
inst/tests |only
man/attack.Rd |only
man/calc.sdcProblem-method.Rd | 35
man/getInfo.Rd | 16
man/makeProblem.Rd | 42
man/primarySuppression.Rd | 61
man/protectLinkedTables.Rd | 20
man/protectTable.Rd | 4
man/setInfo.Rd | 11
man/summary-method.Rd | 6
src/csp.cpp | 108 -
tests |only
35 files changed, 6413 insertions(+), 6217 deletions(-)
Title: Parametric linkage analysis in R
Diff between paramlink versions 0.9-1 dated 2013-04-15 and 0.9-6 dated 2014-04-01
Description: Parametric linkage analysis and other likelihood-based pedigree analyses based on the Elston-Stewart algorithm, including singlepoint LOD scores, power analysis and computation of marker genotype distributions. Multipoint analysis is provided through a convenient MERLIN wrapper. Includes many utility functions for creating, manipulating and plotting pedigrees, markers and linkage results.
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland
DESCRIPTION | 18
MD5 | 79 ++--
NAMESPACE | 4
NEWS | 31 +
R/as.matrix.linkdat.R | 2
R/createPedigree.R | 33 +
R/examineKinships.R |only
R/likelihood.R | 32 -
R/linkdat.R | 165 ++++----
R/linkres.R | 8
R/markerSim.R | 31 +
R/markers.R | 807 ++++++++++++++++++++++---------------------
R/merlin.R | 76 +---
R/modify.R | 306 ++++++++--------
R/plot.linkdat.R | 17
R/relationLR.R |only
R/setMap.R | 63 ++-
R/subset.linkdat.R | 2
R/utils.R | 579 +++++++++++++++++-------------
man/Xped.Rd | 3
man/as.data.frame.linkdat.Rd | 2
man/as.matrix.linkdat.Rd | 1
man/dominant.Rd | 3
man/examineKinships.Rd |only
man/exclusionPower.Rd | 5
man/inbreeding.Rd |only
man/likelihood.Rd | 4
man/linkage.power.Rd | 7
man/linkageSim.Rd | 1
man/linkdat.Rd | 5
man/linkdat.utils.Rd | 65 ++-
man/linkres.Rd | 1
man/lod.Rd | 3
man/lod.peaks.Rd | 1
man/markers.Rd | 2
man/mergePed.Rd |only
man/merlin.Rd | 9
man/modify.Rd | 17
man/oneMarkerDistribution.Rd | 7
man/plot.linkdat.Rd | 10
man/readDatfile.Rd |only
man/relationLR.Rd |only
man/toyped.Rd | 4
man/twoloops.Rd | 3
44 files changed, 1340 insertions(+), 1066 deletions(-)
Title: Utility Functions by Youyi & Krisz
Diff between kyotil versions 2013.12-9 dated 2013-12-09 and 2014.4-1 dated 2014-04-01
Description: A miscellaneous set of functions for printing, plotting, kernels, etc. Additional contributors are acknowledged on individual function help pages.
Author: Youyi Fong
Maintainer: Youyi Fong
DESCRIPTION | 8 +-
MD5 | 50 ++++++------
NAMESPACE | 6 -
R/base.R | 26 +-----
R/kernel.R | 127 +++++++++++++++++---------------
R/math.R | 8 --
R/matrix.R | 1
R/matrix2.R | 75 ++++++++++---------
R/plotting.R | 137 +++++++++++++++++++++++++----------
R/print.R | 4 -
R/regression.model.functions.R | 26 ++----
R/stat.R |only
R/string.R | 9 ++
inst/doc/kyotil-vignette.R | 2
inst/doc/kyotil-vignette.Rnw | 2
inst/doc/kyotil-vignette.pdf |binary
man/base.Rd | 19 ++--
man/math.Rd | 6 -
man/plotting.Rd | 51 ++++++++++---
man/regression.model.functions.Rd | 5 -
man/stat.Rd |only
src/fromKutil.c | 44 ++++++++++-
src/kernels.c | 67 +++++++++++++++++
src/matrix.c | 19 ++++
src/matrix.h | 5 +
vignettes/figure/minimal-corplot.pdf |binary
vignettes/kyotil-vignette.Rnw | 2
27 files changed, 460 insertions(+), 239 deletions(-)
Title: Automated caret feature selection
Diff between fscaret versions 0.8.5.4 dated 2014-02-26 and 0.8.5.5 dated 2014-04-01
Description: Automated feature selection using variety of models
provided by caret package
Author: Jakub Szlek
Maintainer: Jakub Szlek
DESCRIPTION | 10 ++++++----
MD5 | 14 +++++++-------
build/vignette.rds |binary
inst/NEWS.Rd | 12 +++++++++++-
inst/doc/fscaret.Rnw | 16 ++++++++++++++--
inst/doc/fscaret.pdf |binary
man/fscaret-package.Rd | 15 +++++++++------
vignettes/fscaret.Rnw | 15 ++++++++++++++-
8 files changed, 61 insertions(+), 21 deletions(-)
Title: Bridging the gap between qualitative data and quantitative
analysis
Diff between qdap versions 1.3.3 dated 2014-03-25 and 1.3.4 dated 2014-04-01
Description: This package automates many of the tasks associated with
quantitative discourse analysis of transcripts containing discourse
including frequency counts of sentence types, words, sentences, turns of
talk, syllables and other assorted analysis tasks. The package
provides parsing tools for preparing transcript data. Many functions
enable the user to aggregate data by any number of grouping variables
providing analysis and seamless integration with other R packages that
undertake higher level analysis and visualization of text. This affords
the user a more efficient and targeted analysis. qdap is designed for
transcript analysis, however, many functions are applicable to other areas
of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
DESCRIPTION | 6
MD5 | 55 +--
NAMESPACE | 9
NEWS | 27 +
R/Animate.R | 5
R/discourse_map.R | 46 ++
R/freq_terms.R | 2
R/gantt.R | 96 +++++
R/gantt_plot.R | 33 ++
R/gantt_wrap.R | 65 ++++
R/igraph_params.R |only
R/list2df.R | 2
R/polarity.R | 545 ++++++++++++++++++++++++++++++++++
R/pos.R | 1
R/utils.R | 47 ++
inst/CITATION | 4
inst/doc/qdap_vignette.html | 14
inst/doc/tm_package_compatibility.pdf |binary
man/Animate.Rd | 5
man/Animate.discourse_map.Rd | 2
man/Animate.gantt.Rd |only
man/Animate.gantt_plot.Rd |only
man/Animate.polarity.Rd |only
man/discourse_map.Rd | 16
man/freq_terms.Rd | 2
man/gantt.Rd | 34 +-
man/gantt_plot.Rd | 33 ++
man/igraph_params.Rd |only
man/plot.animated_polarity.Rd |only
man/polarity.Rd | 145 +++++++++
man/print.animated_discourse_map.Rd | 2
man/print.animated_polarity.Rd |only
32 files changed, 1124 insertions(+), 72 deletions(-)
Title: Analysis of evolutionary rates in an OU framework
Diff between OUwie versions 1.41 dated 2014-03-14 and 1.42 dated 2014-04-01
Description: Calculates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck-based Hansen models that allow the strength of selection and stochastic motion to vary across selective regimes.
Author: Jeremy M. Beaulieu
Maintainer: Jeremy Beaulieu
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/OUwie.R | 32 ++++++++++++++++++++++----------
R/OUwie.fixed.R | 11 +++++++++--
4 files changed, 38 insertions(+), 19 deletions(-)