Title: Functions for a variety of stylometric analyses
Diff between stylo versions 0.5.4 dated 2014-02-25 and 0.5.5 dated 2014-04-02
Description: A number of functions, supplemented by GUI, to perform various
analyses in the field of computational stylistics, authorship
attribution, etc.
Author: Maciej Eder, Jan Rybicki, Mike Kestemont
Maintainer: Maciej Eder
DESCRIPTION | 8 +--
MD5 | 14 +++---
NEWS | 4 +
R/classify.R | 86 +++++++++++++++++++++++++++---------------
R/gui.classify.R | 104 +++++++++++++++++++++++++--------------------------
R/gui.stylo.R | 103 ++++++++++++++++++++++++--------------------------
R/stylo.R | 5 +-
R/txt.to.words.ext.R | 8 ++-
8 files changed, 182 insertions(+), 150 deletions(-)
Title: Access to Facebook API via R
Diff between Rfacebook versions 0.3 dated 2014-01-05 and 0.4 dated 2014-04-02
Description: Provides an interface to the Facebook API
Author: Pablo Barbera
Maintainer: Pablo Barbera
ChangeLog | 13 ++++++-
DESCRIPTION | 12 ++----
MD5 | 42 ++++++++++++-----------
NAMESPACE | 2 +
R/fbOAuth.R | 30 ++++++++++------
R/getFQL.R |only
R/getPage.R | 15 +++++++-
R/getPost.R | 16 +++++---
R/searchPages.R |only
R/utils.R | 50 +++++++++++++++++++--------
man/Rfacebook-package.Rd | 18 +++++-----
man/fbOAuth.Rd | 84 +++++++++++++++++++++--------------------------
man/getCheckins.Rd | 16 ++++----
man/getFQL.Rd |only
man/getFriends.Rd | 14 +++----
man/getLikes.Rd | 14 +++----
man/getNetwork.Rd | 17 ++++-----
man/getNewsfeed.Rd | 10 ++---
man/getPage.Rd | 25 ++++++++-----
man/getPost.Rd | 32 ++++++++---------
man/getUsers.Rd | 12 +++---
man/searchFacebook.Rd | 21 +++++------
man/searchPages.Rd |only
man/updateStatus.Rd | 12 +++---
24 files changed, 255 insertions(+), 200 deletions(-)
Title: Compiling the NHL Real Time Scoring System Database for easy use
in R
Diff between nhlscrapr versions 1.2 dated 2013-08-16 and 1.4 dated 2014-04-02
Description: Compiling the NHL Real Time Scoring System Database for easy use in R
Author: A.C. Thomas, Samuel L. Ventura
Maintainer: A.C. Thomas
nhlscrapr-1.2/nhlscrapr/data |only
nhlscrapr-1.2/nhlscrapr/man/nhl20022013.Rd |only
nhlscrapr-1.4/nhlscrapr/DESCRIPTION | 11
nhlscrapr-1.4/nhlscrapr/MD5 | 25
nhlscrapr-1.4/nhlscrapr/NAMESPACE | 18
nhlscrapr-1.4/nhlscrapr/R/convert-gif.R | 1
nhlscrapr-1.4/nhlscrapr/R/convert-html.R | 4
nhlscrapr-1.4/nhlscrapr/R/convert-json.R | 10
nhlscrapr-1.4/nhlscrapr/R/integrate.R | 939 ++++++++++------------
nhlscrapr-1.4/nhlscrapr/R/manual-name-fixes.R |only
nhlscrapr-1.4/nhlscrapr/R/operations.R | 401 +++++++++
nhlscrapr-1.4/nhlscrapr/man/fold-frames.Rd | 4
nhlscrapr-1.4/nhlscrapr/man/full.game.database.Rd | 10
nhlscrapr-1.4/nhlscrapr/man/nhlscrapr-package.Rd | 24
nhlscrapr-1.4/nhlscrapr/man/process-games.Rd | 47 -
15 files changed, 890 insertions(+), 604 deletions(-)
Title: Apply Gaussian Process in Functional data analysis
Diff between GPFDA versions 1.0 dated 2014-01-03 and 1.1 dated 2014-04-02
Description: Use functional regression as the mean structure and Gaussian Process as the covariance structure.
Author: Jian Qing Shi, Yafeng Cheng
Maintainer: Yafeng Cheng
GPFDA-1.0/GPFDA/R/gp.functions_new3.R |only
GPFDA-1.0/GPFDA/R/gpfr.functions3.R |only
GPFDA-1.1/GPFDA/DESCRIPTION | 8 ++---
GPFDA-1.1/GPFDA/MD5 | 34 ++++++++++++------------
GPFDA-1.1/GPFDA/R/gp.functions_new4.R |only
GPFDA-1.1/GPFDA/R/gpfr.functions4.R |only
GPFDA-1.1/GPFDA/demo/co2.R | 38 +++++++++++++--------------
GPFDA-1.1/GPFDA/demo/gpfr.R | 4 +-
GPFDA-1.1/GPFDA/demo/gpr_ex1.R | 18 +++++--------
GPFDA-1.1/GPFDA/demo/gpr_ex2.R | 19 +++++--------
GPFDA-1.1/GPFDA/man/D2.Rd | 11 +++++--
GPFDA-1.1/GPFDA/man/co2.Rd | 9 +++++-
GPFDA-1.1/GPFDA/man/cov.linear.Rd | 11 +++----
GPFDA-1.1/GPFDA/man/cov.pow.ex.Rd | 12 +++++---
GPFDA-1.1/GPFDA/man/cov.rat.qu.Rd | 13 +++++----
GPFDA-1.1/GPFDA/man/gppredict.Rd | 2 -
GPFDA-1.1/GPFDA/man/gpr.Rd | 47 +++++++++++++++++++++++++---------
GPFDA-1.1/GPFDA/man/wrap.Rd | 6 +---
GPFDA-1.1/GPFDA/man/xixj.Rd | 10 +++++--
GPFDA-1.1/GPFDA/man/xixj_sta.Rd | 7 +++--
20 files changed, 141 insertions(+), 108 deletions(-)
Title: Weather Forecast Verification Utilities.
Diff between verification versions 1.36 dated 2013-12-18 and 1.37 dated 2014-04-02
Description: This package contains utilities for verification of
discrete,continuous, probabilistic forecasts and forecast
expressed as parametric distributions.
Author: NCAR - Research Applications Laboratory
Maintainer: Eric Gilleland
verification-1.36/verification/R/IS.R |only
verification-1.36/verification/R/int.scale.verify.R |only
verification-1.36/verification/R/plot.int.scale.R |only
verification-1.36/verification/data/analysis.dat.rda |only
verification-1.36/verification/data/forecast.dat.rda |only
verification-1.36/verification/man/IS.Rd |only
verification-1.36/verification/man/analysis.dat.Rd |only
verification-1.36/verification/man/forecast.dat.Rd |only
verification-1.36/verification/man/int.scale.verify.Rd |only
verification-1.36/verification/man/plot.int.scale.Rd |only
verification-1.37/verification/DESCRIPTION | 8 -
verification-1.37/verification/MD5 | 26 +--
verification-1.37/verification/NAMESPACE | 4
verification-1.37/verification/R/crpsFromAlphaBeta.R | 7
verification-1.37/verification/R/predcomptests.R |only
verification-1.37/verification/R/table.stats.R | 130 +++++++++++------
verification-1.37/verification/data/datalist | 2
verification-1.37/verification/man/pop.Rd | 4
verification-1.37/verification/man/predcomp.test.Rd |only
verification-1.37/verification/man/verify.Rd | 10 -
20 files changed, 120 insertions(+), 71 deletions(-)
Title: Evaluation of diversity in nucleotide libraries
Diff between peptider versions 0.1.1 dated 2013-10-19 and 0.1.2 dated 2014-04-02
Description: Functions for evaluating diversity in peptide libraries, including
NNN, NNB, NNK/S, and trimer schemes. This includes expected coverage,
relative efficiency, and functional diversity of the library.
Author: Heike Hofmann, Eric Hare, ggobi Foundation
Maintainer: Eric Hare
DESCRIPTION | 15 ++--
MD5 | 47 ++++++-------
NAMESPACE | 3
R/peptider.r | 156 ++++++++++++++++++++++++++++++++++++++++++++-
R/tabulate.r | 88 +++++++++++++++++++++----
man/BLOSUM80.Rd | 21 +++---
man/codons.Rd | 12 +--
man/coverage.Rd | 10 +-
man/detect.Rd | 12 +--
man/diversity.Rd |only
man/efficiency.Rd | 10 +-
man/encodingReduce.Rd | 6 -
man/generateCustom.Rd | 18 +++--
man/generateCustomLib.Rd | 12 ++-
man/generateCustomProbs.Rd | 12 ++-
man/getChoices.Rd | 10 +-
man/getCounts.Rd | 6 -
man/getNeighbors.Rd | 14 ++--
man/getNofNeighbors.Rd | 19 ++---
man/libBuild.Rd | 8 +-
man/libscheme.Rd | 10 +-
man/makowski.Rd | 39 +++++------
man/ppeptide.Rd | 12 +--
man/scheme.Rd | 8 +-
man/schemes.Rd | 59 ++++++++---------
25 files changed, 417 insertions(+), 190 deletions(-)
Title: Using R to install stuff (such as: R, Rtools, RStudio, git, and
more!)
Diff between installr versions 0.13.3 dated 2014-02-01 and 0.14.0 dated 2014-04-02
Description: R is great for installing software. Through the 'installr'
package you can automate the updating of R (on Windows, using updateR())
and install new software. Software installation is initiated through a
gui (just run installr()), or through functions such as: install.Rtools(),
install.pandoc(), install.git(), and many more. The updateR() command
performs the following: finding the latest R version, downloading it,
running the installer, deleting the installation file, copy and updating
old packages to the new R installation.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Barry Rowlingson [ctb],
Boris Hejblum [ctb],
Dason [ctb],
Felix Schonbrodt [ctb],
G. Grothendieck [ctb],
GERGELY DAROCZI [ctb],
Heuristic Andrew [ctb],
James [ctb] (http://stackoverflow.com/users/269476/james),
Thomas Leeper [ctb] (http://thomasleeper.com/),
VitoshKa [ctb],
Yihui Xie [ctb] (http://yihui.name),
Michael Friendly [ctb] (http://datavis.ca/),
Kornelius Rohmeyer [ctb] (http://algorithm-forge.com/techblog/),
Dieter Menne [ctb],
Tyler Hunt [ctb] (https://github.com/JackStat)
Maintainer: Tal Galili
DESCRIPTION | 22 ++-
MD5 | 162 +++++++++++++--------------
NAMESPACE | 2
NEWS | 48 ++++++++
R/install.r | 66 ++++++++---
R/os.manage.r | 2
R/updateR.r | 32 ++++-
README.md | 2
man/R_version_in_a_folder.Rd | 5
man/add.installr.GUI.Rd | 1
man/add_load_installr_on_startup_menu.Rd | 1
man/add_remove_installr_from_startup_menu.Rd | 1
man/add_to_.First_in_Rprofile.site.Rd | 1
man/ask.user.for.a.row.Rd | 1
man/ask.user.yn.question.Rd | 1
man/barplot_package_users_per_day.Rd | 1
man/browse.latest.R.NEWS.Rd | 1
man/check.for.updates.R.Rd | 1
man/check.integer.Rd | 1
man/checkMD5sums2.Rd | 1
man/copy.packages.between.libraries.Rd | 1
man/cranometer.Rd | 1
man/create.global.library.Rd | 1
man/download_RStudio_CRAN_data.Rd | 1
man/fetch_tag_from_Rd.Rd | 1
man/file.name.from.url.Rd | 1
man/format_RStudio_CRAN_data.Rd | 1
man/freegeoip.Rd | 1
man/get.installed.R.folders.Rd | 1
man/install.7zip.Rd | 1
man/install.Cygwin.Rd | 6 -
man/install.FFmpeg.Rd | 1
man/install.GitHub.Rd | 1
man/install.GraphicsMagick.Rd | 1
man/install.ImageMagick.Rd | 1
man/install.LaTeX2RTF.Rd | 1
man/install.LyX.Rd | 1
man/install.MikTeX.Rd | 1
man/install.R.Rd | 11 +
man/install.RStudio.Rd | 1
man/install.Rdevel.Rd | 1
man/install.Rtools.Rd | 1
man/install.SWFTools.Rd | 1
man/install.URL.Rd | 11 +
man/install.git.Rd | 1
man/install.notepadpp.Rd | 1
man/install.npptor.Rd | 1
man/install.packages.zip.Rd | 1
man/install.pandoc.Rd | 6 -
man/installr.Rd | 1
man/is.RStudio.Rd | 1
man/is.Rgui.Rd | 1
man/is.empty.Rd | 1
man/is.exe.installed.Rd | 1
man/is.windows.Rd | 1
man/is_in_.First_in_Rprofile.site.Rd | 1
man/lineplot_package_downloads.Rd | 1
man/load_installr_on_startup.Rd | 1
man/most_downloaded_packages.Rd | 1
man/myip.Rd | 1
man/os.hibernate.Rd | 1
man/os.lock.Rd | 1
man/os.manage.Rd | 1
man/os.restart.Rd | 1
man/os.shutdown.Rd | 1
man/os.sleep.Rd | 1
man/package_authors.Rd | 1
man/pkgDNLs_worldmapcolor.Rd | 1
man/read_RStudio_CRAN_data.Rd | 3
man/remove.installr.GUI.Rd | 1
man/remove_from_.First_in_Rprofile.site.Rd | 1
man/require2.Rd | 1
man/restart_RGui.Rd | 1
man/rm_installr_from_startup.Rd | 1
man/source.https.Rd | 1
man/system.PATH.Rd | 1
man/turn.number.version.Rd | 1
man/turn.version.to.number.Rd | 1
man/turn.version.to.number1.Rd | 1
man/uninstall.R.Rd | 1
man/up_folder.Rd | 1
man/updateR.Rd | 11 +
82 files changed, 332 insertions(+), 124 deletions(-)
Title: Isotope pattern, profile and centroid calculation for mass
spectrometry.
Diff between enviPat versions 1.4 dated 2014-03-18 and 1.5 dated 2014-04-02
Description: Fast and very memory-efficient calculation of isotope patterns,
subsequent convolution to theoretical envelopes (profiles) plus valley
detection and centroidization or intensoid calculation. Batch processing,
resolution interpolation, wrapper, adduct calculations and molecular
formula parsing.
Author: Martin Loos, Christian Gerber
Maintainer: Martin Loos
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 6 +++++-
R/isopattern.R | 2 +-
data/isotopes.rda |binary
man/isotopes.Rd | 12 ++++++++++--
6 files changed, 25 insertions(+), 13 deletions(-)
Title: Species Distribution Modelling Tools: Tools for processing data
associated with species distribution modelling exercises
Diff between SDMTools versions 1.1-13 dated 2012-11-08 and 1.1-20 dated 2014-04-02
Description: This packages provides a set of tools for post processing the
outcomes of species distribution modeling exercises. It includes novel
methods for comparing models and tracking changes in distributions through
time. It further includes methods for visualizing outcomes, selecting
thresholds, calculating measures of accuracy and landscape fragmentation
statistics, etc.. This package was made possible in part by financial
support from the Australian Research Council & ARC Research Network for
Earth System Science.
Author: Jeremy VanDerWal, Lorena Falconi, Stephanie Januchowski, Luke Shoo and Collin Storlie
Maintainer: Jeremy VanDerWal
SDMTools-1.1-13/SDMTools/R/ImageDiff.R |only
SDMTools-1.1-13/SDMTools/R/aspect.R |only
SDMTools-1.1-13/SDMTools/R/dataframe2asc.R |only
SDMTools-1.1-13/SDMTools/R/grid.perimeter.R |only
SDMTools-1.1-13/SDMTools/R/image.asc.R |only
SDMTools-1.1-13/SDMTools/R/print.asc.R |only
SDMTools-1.1-13/SDMTools/R/vector.averaging.R |only
SDMTools-1.1-13/SDMTools/R/write.asc.R |only
SDMTools-1.1-13/SDMTools/R/zzz.R |only
SDMTools-1.1-13/SDMTools/man/legend.gradient.rd |only
SDMTools-1.1-13/SDMTools/man/quick.map.rd |only
SDMTools-1.1-20/SDMTools/ChangeLog | 13 +
SDMTools-1.1-20/SDMTools/DESCRIPTION | 30 +--
SDMTools-1.1-20/SDMTools/MD5 | 148 ++++++++---------
SDMTools-1.1-20/SDMTools/NAMESPACE | 67 +++++++
SDMTools-1.1-20/SDMTools/R/COGravity.R | 116 ++++++++-----
SDMTools-1.1-20/SDMTools/R/ClassStat.R | 122 +++++++++++++-
SDMTools-1.1-20/SDMTools/R/ConnCompLabel.R | 49 +++++
SDMTools-1.1-20/SDMTools/R/Istat.R | 73 ++++++--
SDMTools-1.1-20/SDMTools/R/Kappa.R | 56 ++++--
SDMTools-1.1-20/SDMTools/R/PatchStat.R | 78 ++++++++-
SDMTools-1.1-20/SDMTools/R/Scalebar.R | 50 ++++-
SDMTools-1.1-20/SDMTools/R/SigDiff.R | 140 ++++++++++++----
SDMTools-1.1-20/SDMTools/R/ZonalStat.R | 69 +++++++-
SDMTools-1.1-20/SDMTools/R/accuracy.R | 158 +++++++++++-------
SDMTools-1.1-20/SDMTools/R/asc.from.raster.R | 163 ++++++++++++------
SDMTools-1.1-20/SDMTools/R/asc2dataframe.R | 84 +++++++++
SDMTools-1.1-20/SDMTools/R/auc.R | 102 +++++++----
SDMTools-1.1-20/SDMTools/R/circular.averaging.R | 79 ++++++++-
SDMTools-1.1-20/SDMTools/R/compare.matrix.R | 112 +++++++++---
SDMTools-1.1-20/SDMTools/R/confusion.matrix.R | 85 ++++++---
SDMTools-1.1-20/SDMTools/R/destination.R | 133 ++++++++++++---
SDMTools-1.1-20/SDMTools/R/distance.R | 98 ++++++++---
SDMTools-1.1-20/SDMTools/R/extract.data.R | 66 +++++--
SDMTools-1.1-20/SDMTools/R/getXYcoords.R | 64 ++++---
SDMTools-1.1-20/SDMTools/R/grid.area.R | 113 +++++++++----
SDMTools-1.1-20/SDMTools/R/grid.info.R | 97 +++++++----
SDMTools-1.1-20/SDMTools/R/lcmw.R | 67 +++++++
SDMTools-1.1-20/SDMTools/R/legend.gradient.r | 81 +++++++--
SDMTools-1.1-20/SDMTools/R/omission.R | 103 +++++++----
SDMTools-1.1-20/SDMTools/R/optim.thresh.R | 168 ++++++++++++-------
SDMTools-1.1-20/SDMTools/R/pnt.in.poly.R | 78 +++++++--
SDMTools-1.1-20/SDMTools/R/put.data.R | 63 +++++--
SDMTools-1.1-20/SDMTools/R/quick.map.r | 119 +++++++++++--
SDMTools-1.1-20/SDMTools/R/read.asc.R | 156 +++++++++++++++++-
SDMTools-1.1-20/SDMTools/R/slope.R | 114 ++++++++++---
SDMTools-1.1-20/SDMTools/R/wt.mean.R | 62 +++++--
SDMTools-1.1-20/SDMTools/man/COGravity.Rd | 55 +++---
SDMTools-1.1-20/SDMTools/man/ClassStat.Rd | 181 +++++++++++++--------
SDMTools-1.1-20/SDMTools/man/ConnCompLabel.Rd | 56 ++++--
SDMTools-1.1-20/SDMTools/man/Istat.Rd | 57 ++++--
SDMTools-1.1-20/SDMTools/man/Kappa.Rd | 42 ++--
SDMTools-1.1-20/SDMTools/man/PatchStat.Rd | 102 +++++++----
SDMTools-1.1-20/SDMTools/man/Scalebar.Rd | 46 +++--
SDMTools-1.1-20/SDMTools/man/SigDiff.Rd | 101 +++++++----
SDMTools-1.1-20/SDMTools/man/ZonalStat.Rd | 68 ++++---
SDMTools-1.1-20/SDMTools/man/accuracy.Rd | 75 +++++---
SDMTools-1.1-20/SDMTools/man/asc.from.raster.Rd | 80 ++++++---
SDMTools-1.1-20/SDMTools/man/asc2dataframe.Rd | 143 +++++++++-------
SDMTools-1.1-20/SDMTools/man/auc.Rd | 47 +++--
SDMTools-1.1-20/SDMTools/man/circular.averaging.Rd | 82 ++++++---
SDMTools-1.1-20/SDMTools/man/compare.matrix.Rd | 52 +++---
SDMTools-1.1-20/SDMTools/man/confusion.matrix.Rd | 46 +++--
SDMTools-1.1-20/SDMTools/man/destination.Rd | 122 ++++++++------
SDMTools-1.1-20/SDMTools/man/distance.Rd | 115 ++++++++-----
SDMTools-1.1-20/SDMTools/man/extract.data.Rd | 52 +++---
SDMTools-1.1-20/SDMTools/man/getXYcoords.Rd | 58 +++---
SDMTools-1.1-20/SDMTools/man/grid.area.Rd | 32 ++-
SDMTools-1.1-20/SDMTools/man/grid.info.Rd | 64 ++++---
SDMTools-1.1-20/SDMTools/man/lcmw.Rd | 55 ++++--
SDMTools-1.1-20/SDMTools/man/legend.gradient.Rd |only
SDMTools-1.1-20/SDMTools/man/omission.Rd | 50 +++--
SDMTools-1.1-20/SDMTools/man/optim.thresh.Rd | 81 ++++++---
SDMTools-1.1-20/SDMTools/man/pnt.in.poly.Rd | 56 ++++--
SDMTools-1.1-20/SDMTools/man/put.data.Rd | 49 +++--
SDMTools-1.1-20/SDMTools/man/quick.map.Rd |only
SDMTools-1.1-20/SDMTools/man/read.asc.Rd | 110 ++++++++----
SDMTools-1.1-20/SDMTools/man/slope.Rd | 68 ++++---
SDMTools-1.1-20/SDMTools/man/wt.mean.Rd | 49 +++--
SDMTools-1.1-20/SDMTools/src/slope.aspect.c | 4
SDMTools-1.1-20/SDMTools/src/vincenty.geodesics.c | 70 ++++----
SDMTools-1.1-20/SDMTools/src/writeasciidata.c |only
82 files changed, 3957 insertions(+), 1687 deletions(-)
Title: Local polynomial estimators of intensity function or its
derivatives
Diff between lpint versions 1.0 dated 2012-09-25 and 2.0 dated 2014-04-02
Description: Estimates the intensity function, or its derivative of a given order, of a multiplicative counting process using the local polynomial method
Author: Feng Chen
Maintainer: Feng Chen
DESCRIPTION | 14 +++++++-------
MD5 | 10 +++++-----
R/lplikint.R | 10 ++++++----
man/lpint-package.Rd | 17 ++++++++---------
man/lpint.Rd | 42 ++++++++++++++++++++++++++++++++----------
man/lplikint.Rd | 17 +++++++++++------
6 files changed, 69 insertions(+), 41 deletions(-)
Title: spatial and spatio-temporal geostatistical modelling, prediction
and simulation
Diff between gstat versions 1.0-18 dated 2013-11-19 and 1.0-19 dated 2014-04-02
Description: variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma [aut, cre],
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma
DESCRIPTION | 16 +--
MD5 | 83 +++++++++---------
NAMESPACE | 4
R/gstat.formula.R | 2
R/krige0.R | 206 ++++++++++++++++++++++++++++------------------
R/plot.gstatVariogram.R | 13 +-
R/variogramST.R | 142 ++++++++++++++++++++++++++++---
build/vignette.rds |binary
data/coalash.rda |binary
data/fulmar.rda |binary
data/jura.rda |binary
data/meuse.all.rda |binary
data/meuse.alt.rda |binary
data/ncp.grid.rda |binary
data/oxford.rda |binary
data/pcb.rda |binary
data/sic2004.rda |binary
data/sic97.rda |binary
data/tull.rda |binary
data/vv.rda |binary
data/walker.rda |binary
data/wind.rda |binary
demo/localKrigeST.R | 32 -------
demo/stkrige.R | 138 ++++++++++++++----------------
inst/ChangeLog | 93 ++++++++++++++++++++
inst/doc/gstat.pdf |binary
inst/doc/prs.pdf |binary
inst/doc/st.R | 112 ++++++++++++++-----------
inst/doc/st.Rnw | 176 +++++++++++++++++----------------------
inst/doc/st.pdf |binary
man/fit.StVariogram.Rd | 13 ++
man/krigeST.Rd | 9 +-
man/progress.Rd |only
man/variogramST.Rd | 10 +-
man/variogramSurface.Rd | 12 +-
man/vv.Rd | 44 ++++-----
tests/krige0.R | 64 +++++++-------
tests/krige0.Rout.save | 12 +-
tests/unproj.Rout.save | 18 ++--
tests/windst.Rout.save | 4
vignettes/gstat.Rout.save | 19 ++--
vignettes/prs.Rout.save | 5 -
vignettes/st.Rnw | 176 +++++++++++++++++----------------------
43 files changed, 816 insertions(+), 587 deletions(-)
Title: Test Analysis Modules
Diff between TAM versions 1.0-1 dated 2014-02-02 and 1.0-2 dated 2014-04-02
Description:
The package includes marginal and joint maximum likelihood
estimation of uni- and multidimensional item response models
(Rasch, 2PL, Generalized Partial Credit, Rating Scale, Multi Facets),
fit statistics, standard error estimation, as
well as plausible value imputation and weighted likelihood
estimation of ability.
Author: Thomas Kiefer [aut, cre], Alexander Robitzsch [aut], Margaret Wu [aut]
Maintainer: Thomas Kiefer
DESCRIPTION | 8
MD5 | 23 -
NAMESPACE | 2
R/designMatrices.mfr.R | 394 +++++++++++++------------
R/designMatrices.mfr_aux.R | 3
R/designMatrices_aux.R | 380 ++++++++++++------------
R/tam.mml.R | 2
R/tam.mml.mfr.R | 2
R/tam.wle.R | 691 +++++++++++++++++++++++++++++---------------
inst/NEWS | 16 +
man/tam.mml.Rd | 55 +++
man/tam.wle.Rd | 12
src/tamwle_helper_ccode.cpp |only
13 files changed, 965 insertions(+), 623 deletions(-)
Title: Kirill's miscellaneous functions
Diff between kimisc versions 0.2 dated 2014-03-20 and 0.2-1 dated 2014-04-02
Description: A collection of useful functions not found anywhere else, mainly
for programming: Generalized lagged differences, checking containment in an
interval, creating a factor where the levels maintain the order of
appearance, sampling rows from a data frame, converting seconds from
midnight to and from H:M:S format, choosing the first non-NA value,
transposing lists of lists, returning the name of the file currently
sourced, smart named lists and vectors, and an alternative interface to
assign().
Author: Kirill Mueller
Maintainer: Kirill Mueller
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/kimisc-package.R | 4 ++--
R/ofactor.R | 22 +++++++++++++---------
inst/NEWS.Rd | 7 +++++++
man/kimisc-package.Rd | 4 ++--
man/ofactor.Rd | 26 ++++++++------------------
tests/Examples/kimisc-Ex.Rout.save | 6 ++++--
8 files changed, 47 insertions(+), 44 deletions(-)
Title: Estimation of an ETAS model. Mixed FLP (Forward Likelihood
Predictive) and ML estimation of non-parametric and parametric
components of the ETAS model for earthquake description.
Diff between etasFLP versions 1.0.1 dated 2014-02-13 and 1.0.2 dated 2014-04-02
Description: Estimation of the components of an ETAS model for earthquake description.
Non-parametric background seismicity can be estimated through FLP (Forward Likelihood Predictive), while parametric components are estimated through maximum likelihood.
The two estimation steps are alternated until convergence is obtained.
For each event the probability of being a background event is estimated and used as a weight for declustering steps. Many options to control the estimation process are present. Some descriptive functions for earthquakes catalogs are present; also plot, print, summary, profile methods are defined for main output (objects of class "etasclass").
Author: Marcello Chiodi [aut, cre],
Giada Adelfio [aut]
Maintainer: Marcello Chiodi
ChangeLog | 12 ++++++
DESCRIPTION | 13 +++---
MD5 | 41 +++++++++++----------
R/bwd.nrd.R | 3 +
R/etas.mod2.R | 14 +++++++
R/etasclass.R | 12 ++++--
R/magn.plot.R | 6 ++-
R/plot.etasclass.R | 59 +++++++++++++++++++------------
R/simpson.coeff.R |only
R/simpson.kD.R |only
man/MLA.freq.Rd | 5 --
man/bwd.nrd.Rd | 6 +--
man/californiacatalog.Rd | 2 -
man/eqcat.Rd | 2 -
man/etasFLP-package.Rd | 4 +-
man/etasclass.Rd | 89 ++++++++++++++++++++++++-----------------------
man/italycatalog.Rd | 6 +--
man/kde2dnew.fortran.Rd | 4 +-
man/magn.plot.Rd | 11 +++--
man/plot.etasclass.Rd | 12 +++---
man/profile.etasclass.Rd | 2 -
man/simpson.coeff.Rd |only
man/time2date.Rd | 8 ++--
23 files changed, 183 insertions(+), 128 deletions(-)
Title: Rank-hazard plots
Diff between rankhazard versions 0.8-1 dated 2012-03-25 and 1.0 dated 2014-04-02
Description: Rank-hazard plots (Karvanen and Harrell, Statistics in Medicine 2009) visualize the relative importance of covariates in a proportional hazards model. The key idea is to rank the covariate values and plot the relative hazard as a function of ranks scaled to interval [0,1]. The relative hazard is plotted in respect to the reference hazard, which can bee.g. the hazard related to the median of the covariate.
Author: Juha Karvanen, Nanni Koski
Maintainer: Nanni Koski
rankhazard-0.8-1/rankhazard/R/rankhazardplot.R |only
rankhazard-0.8-1/rankhazard/R/rankhazardplot.coxph.R |only
rankhazard-0.8-1/rankhazard/R/rankhazardplot.cph.R |only
rankhazard-0.8-1/rankhazard/R/rankhazardplot.default.R |only
rankhazard-1.0/rankhazard/DESCRIPTION | 35 -
rankhazard-1.0/rankhazard/MD5 | 17
rankhazard-1.0/rankhazard/NAMESPACE | 6
rankhazard-1.0/rankhazard/R/coxph.R |only
rankhazard-1.0/rankhazard/R/coxph_CI.R |only
rankhazard-1.0/rankhazard/R/cph.R |only
rankhazard-1.0/rankhazard/R/cph_CI.R |only
rankhazard-1.0/rankhazard/R/default.R |only
rankhazard-1.0/rankhazard/man/rankhazard-package.Rd | 43 +
rankhazard-1.0/rankhazard/man/rankhazardplot.Rd | 451 +++++++++++++++--
14 files changed, 476 insertions(+), 76 deletions(-)
Title: Visualization of spatial and spatio-temporal objects in Google
Earth
Diff between plotKML versions 0.4-2 dated 2014-01-15 and 0.4-3 dated 2014-04-02
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules.
Author: Tomislav Hengl [cre, aut],
Pierre Roudier [ctb],
Dylan Beaudette [ctb],
Edzer Pebesma [ctb],
Michael Blaschek [ctb],
Benedikt Graeler [ctb]
Maintainer: Tomislav Hengl
plotKML-0.4-2/plotKML/R/layer.STFDF.R |only
plotKML-0.4-2/plotKML/man/spMetadata.Spatial.Rd |only
plotKML-0.4-3/plotKML/DESCRIPTION | 23
plotKML-0.4-3/plotKML/MD5 | 54 -
plotKML-0.4-3/plotKML/NAMESPACE | 93 +-
plotKML-0.4-3/plotKML/R/AAA-classes.R | 15
plotKML-0.4-3/plotKML/R/AAA-md.R |only
plotKML-0.4-3/plotKML/R/AAAA.R | 64 -
plotKML-0.4-3/plotKML/R/ZZZ.R | 1
plotKML-0.4-3/plotKML/R/getWikiMedia.ImageInfo.R | 2
plotKML-0.4-3/plotKML/R/kml_metadata.R | 21
plotKML-0.4-3/plotKML/R/layer.Raster.R | 4
plotKML-0.4-3/plotKML/R/layer.RasterBrick.R | 2
plotKML-0.4-3/plotKML/R/layer.STIDF.R | 67 -
plotKML-0.4-3/plotKML/R/layer.STTDF.R | 26
plotKML-0.4-3/plotKML/R/layer.SpatialPixels.R | 4
plotKML-0.4-3/plotKML/R/legend.bar.R | 11
plotKML-0.4-3/plotKML/R/plotKML.sp.R | 3
plotKML-0.4-3/plotKML/R/spMetadata.R | 844 +++++++++++-------
plotKML-0.4-3/plotKML/demo/plotKML.R | 41
plotKML-0.4-3/plotKML/inst/FGDC.xml | 473 +++++-----
plotKML-0.4-3/plotKML/inst/INSPIRE_ISO19139.xml |only
plotKML-0.4-3/plotKML/inst/eberg.xml | 289 ++----
plotKML-0.4-3/plotKML/inst/mdnames.csv | 260 +++--
plotKML-0.4-3/plotKML/man/kml_layer.Rd | 119 +-
plotKML-0.4-3/plotKML/man/layer.STIDF.Rd | 10
plotKML-0.4-3/plotKML/man/layer.STTDF.Rd | 4
plotKML-0.4-3/plotKML/man/plotKML.Rd | 1054 +++++++++++------------
plotKML-0.4-3/plotKML/man/plotKML.env.Rd | 10
plotKML-0.4-3/plotKML/man/spMetadata.Rd | 111 +-
30 files changed, 1916 insertions(+), 1689 deletions(-)
Title: Dependent Mixture Models
Diff between depmix versions 0.9.11 dated 2014-02-20 and 0.9.12 dated 2014-04-02
Description: Fit (multigroup) mixtures of latent Markov models on mixed categorical and continuous (timeseries) data. The Rdonlp2 package can optionally be used for optimization of the log-likelihood and is available from R-forge: https://r-forge.r-project.org/R/?group_id=156
Author: Ingmar Visser
Maintainer: Ingmar Visser
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
data/discrimination.rda |binary
data/speed.rda |binary
inst/doc/depmix-intro.pdf |binary
man/fitdmm.Rd | 16 +++++++++++++++-
6 files changed, 25 insertions(+), 11 deletions(-)
Title: Uniformly Most Powerful Tests
Diff between ump versions 0.5-3 dated 2013-03-31 and 0.5-4 dated 2014-04-02
Description: see title
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
ump-0.5-3/ump/foompter |only
ump-0.5-4/ump/CHANGES | 4 ++++
ump-0.5-4/ump/DESCRIPTION | 12 ++++++------
ump-0.5-4/ump/LICENSE | 23 ++---------------------
ump-0.5-4/ump/MD5 | 11 ++++++-----
ump-0.5-4/ump/build |only
ump-0.5-4/ump/inst/doc/design.pdf |binary
ump-0.5-4/ump/vignettes |only
8 files changed, 18 insertions(+), 32 deletions(-)
More information about sybilcycleFreeFlux at CRAN
Permanent link
More information about spatialTailDep at CRAN
Permanent link
Title: Sparse Lightweight Arrays and Matrices
Diff between slam versions 0.1-31 dated 2014-01-06 and 0.1-32 dated 2014-04-02
Description: Data structures and algorithms for sparse arrays and matrices,
based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre],
David Meyer [aut],
Christian Buchta [aut]
Maintainer: Kurt Hornik
DESCRIPTION | 7 ++++---
MD5 | 12 ++++++------
NAMESPACE | 2 ++
src/sparse.c | 2 +-
tests/abind.Rout.save | 14 ++++++++------
tests/stm_apply.R | 2 +-
tests/stm_apply.Rout.save | 2 +-
7 files changed, 23 insertions(+), 18 deletions(-)
Title: Spherical k-Means Clustering
Diff between skmeans versions 0.2-5 dated 2014-01-06 and 0.2-6 dated 2014-04-02
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre],
Ingo Feinerer [aut],
Martin Kober [aut]
Maintainer: Kurt Hornik
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
NAMESPACE | 2 ++
3 files changed, 8 insertions(+), 6 deletions(-)
Title: Data Structures and Algorithms for Relations
Diff between relations versions 0.6-2 dated 2013-09-06 and 0.6-3 dated 2014-04-02
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate functions,
and fitters for consensus relations.
Author: David Meyer [aut],
Kurt Hornik [aut, cre],
Christian Buchta [ctb]
Maintainer: Kurt Hornik
DESCRIPTION | 15 +++-----
MD5 | 39 ++++++++++-----------
NAMESPACE | 2 +
R/choice.R | 3 +
R/consensus.R | 6 ++-
R/dissimilarity.R | 3 +
R/ensemble.R | 6 ++-
R/fitters.R | 3 +
R/mip.R | 3 +
R/plot.R | 5 +-
R/relation.R | 9 +++-
build |only
data/Cetacea.rda |binary
data/Felines.rda |binary
data/SVM_Benchmarking_Classification.rda |binary
data/SVM_Benchmarking_Classification_Consensus.rda |binary
data/SVM_Benchmarking_Regression.rda |binary
data/SVM_Benchmarking_Regression_Consensus.rda |binary
inst/doc/relations.pdf |binary
inst/po/en@quot/LC_MESSAGES/R-relations.mo |binary
po/R-relations.pot | 4 +-
21 files changed, 56 insertions(+), 42 deletions(-)
Title: Markov Chain Monte Carlo for Potts Models
Diff between potts versions 0.5-1 dated 2011-08-12 and 0.5-2 dated 2014-04-02
Description: the title says it all
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
ChangeLog | 2 ++
DESCRIPTION | 11 ++++++-----
MD5 | 13 ++++++++-----
build |only
inst/doc/cll.R |only
inst/doc/cll.pdf |binary
tests/cll.R | 2 +-
tests/cll.Rout.save | 13 +++++++------
vignettes |only
9 files changed, 24 insertions(+), 17 deletions(-)
Title: Harvest Metadata Using OAI-PMH v2.0
Diff between OAIHarvester versions 0.1-6 dated 2013-07-29 and 0.1-7 dated 2014-04-02
Description:
Harvest metadata using the Open Archives Initiative Protocol for Metadata
Harvesting (OAI-PMH) version 2.0.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik
DESCRIPTION | 8 ++++----
MD5 | 9 +++++----
NAMESPACE | 1 +
R/transform.R | 3 ++-
build |only
inst/doc/oaih.pdf |binary
6 files changed, 12 insertions(+), 9 deletions(-)
Title: Markov Chain Monte Carlo
Diff between mcmc versions 0.9-2 dated 2013-03-31 and 0.9-3 dated 2014-04-02
Description: functions for Markov chain Monte Carlo (MCMC).
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
mcmc-0.9-2/mcmc/inst/doc/bfst1.rda |only
mcmc-0.9-2/mcmc/inst/doc/bfst2.rda |only
mcmc-0.9-2/mcmc/inst/doc/morph1.rda |only
mcmc-0.9-2/mcmc/inst/doc/morph2.rda |only
mcmc-0.9-2/mcmc/tests/circle.Rout.save |only
mcmc-0.9-2/mcmc/tests/initseq.Rout.save |only
mcmc-0.9-2/mcmc/tests/isotropic.Rout.save |only
mcmc-0.9-2/mcmc/tests/logit.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitbat.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitfun.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitfunarg.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitidx.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitlogidx.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitmat.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitnegidx.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitsub.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitsubbat.Rout.save |only
mcmc-0.9-2/mcmc/tests/logitvec.Rout.save |only
mcmc-0.9-2/mcmc/tests/morph.Rout.save |only
mcmc-0.9-2/mcmc/tests/morph.metrop.Rout.save |only
mcmc-0.9-2/mcmc/tests/morphtoo.Rout.save |only
mcmc-0.9-2/mcmc/tests/saveseed.Rout.save |only
mcmc-0.9-2/mcmc/tests/saveseedmorph.Rout.save |only
mcmc-0.9-2/mcmc/tests/temp-par-witch.Rout.save |only
mcmc-0.9-2/mcmc/tests/temp-par.Rout.save |only
mcmc-0.9-2/mcmc/tests/temp-ser-witch.Rout.save |only
mcmc-0.9-2/mcmc/tests/temp-ser.Rout.save |only
mcmc-0.9-3/mcmc/ChangeLog | 2
mcmc-0.9-3/mcmc/DESCRIPTION | 10 +--
mcmc-0.9-3/mcmc/LICENSE | 23 --------
mcmc-0.9-3/mcmc/MD5 | 66 +++++++++----------------
mcmc-0.9-3/mcmc/build |only
mcmc-0.9-3/mcmc/inst/doc/bfst.R |only
mcmc-0.9-3/mcmc/inst/doc/bfst.pdf |binary
mcmc-0.9-3/mcmc/inst/doc/bfst.tex | 12 ++--
mcmc-0.9-3/mcmc/inst/doc/debug.R |only
mcmc-0.9-3/mcmc/inst/doc/debug.pdf |binary
mcmc-0.9-3/mcmc/inst/doc/debug.tex | 4 -
mcmc-0.9-3/mcmc/inst/doc/demo.R |only
mcmc-0.9-3/mcmc/inst/doc/demo.pdf |binary
mcmc-0.9-3/mcmc/inst/doc/demo.tex | 24 ++++-----
mcmc-0.9-3/mcmc/inst/doc/metrop.pdf |binary
mcmc-0.9-3/mcmc/inst/doc/morph.R |only
mcmc-0.9-3/mcmc/inst/doc/morph.pdf |binary
mcmc-0.9-3/mcmc/inst/doc/morph.tex | 6 +-
mcmc-0.9-3/mcmc/inst/doc/temper.pdf |binary
mcmc-0.9-3/mcmc/vignettes |only
47 files changed, 58 insertions(+), 89 deletions(-)
Title: Cluster ensembles
Diff between clue versions 0.3-47 dated 2013-09-06 and 0.3-48 dated 2014-04-02
Description: CLUster Ensembles
Author: Kurt Hornik [aut, cre],
Walter Böhm [ctb]
Maintainer: Kurt Hornik
DESCRIPTION | 6 +++---
MD5 | 31 ++++++++++++++++---------------
NAMESPACE | 2 +-
R/ensemble.R | 6 ++++--
R/hierarchy.R | 21 ++++++++++++++-------
R/partition.R | 15 ++++++++++-----
build |only
data/CKME.rda |binary
data/Cassini.rda |binary
data/GVME.rda |binary
data/GVME_Consensus.rda |binary
data/Kinship82.rda |binary
data/Kinship82_Consensus.rda |binary
data/Phonemes.rda |binary
inst/doc/clue.pdf |binary
inst/po/en@quot/LC_MESSAGES/R-clue.mo |binary
po/R-clue.pot | 4 ++--
17 files changed, 50 insertions(+), 35 deletions(-)