Title: seawater carbonate chemistry with R
Diff between seacarb versions 2.4.10 dated 2013-08-01 and 3.0 dated 2014-04-05
Description: Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Code and/or corrections were contributed by Andreas Andersson,
Bernard Gentili, Andreas Hofmann, Jim Orr,
Aurelien Proye and Karline Soetaert and James Rae
Author: Heloise Lavigne, Jean-Marie Epitalon and Jean-Pierre Gattuso
Maintainer: Jean-Pierre Gattuso
ChangeLog | 31 +
DESCRIPTION | 16
MD5 | 72 +-
R/K0.R | 73 +-
R/K1.R | 380 +++++++--------
R/K1p.R | 164 +++---
R/K2.R | 396 ++++++++-------
R/K2p.R | 163 +++---
R/K3p.R | 165 +++---
R/Kb.R | 178 ++++---
R/Kf.R | 261 +++++-----
R/Ks.R | 104 ++--
R/Ksi.R | 121 ++--
R/Kspa.R | 81 +--
R/Kspc.R | 82 +--
R/Kw.R | 161 +++---
R/Pcorrect.R | 311 +++++++++---
R/buffer.R | 252 +++++-----
R/carb.R | 1409 ++++++++++++++++++++++++++++++++------------------------
R/kconv.R | 33 -
man/K0.Rd | 2
man/K1.Rd | 6
man/K1p.Rd | 103 ++--
man/K2.Rd | 6
man/K2p.Rd | 103 ++--
man/K3p.Rd | 102 ++--
man/Kb.Rd | 105 ++--
man/Kf.Rd | 12
man/Khs.Rd | 94 +--
man/Kn.Rd | 94 +--
man/Ks.Rd | 94 +--
man/Ksi.Rd | 99 +--
man/Kw.Rd | 87 +--
man/Pcorrect.Rd | 130 ++---
man/at.Rd | 4
man/carbm.Rd | 2
man/kconv.Rd | 10
37 files changed, 3069 insertions(+), 2437 deletions(-)
Title: Produces summary tables in the format most often encountered in
scientific articles, and exports them to spreadsheet format
(.xls or .xlsx)
Diff between table1xls versions 0.2 dated 2013-10-17 and 0.3 dated 2014-04-05
Description: Produces summary tables for descriptives and for regression results. Exports the tables to .xls or .xlsx multi-tab spreadsheets, using the XLConnect package.
Author: Assaf P. Oron
Maintainer: Assaf P. Oron
DESCRIPTION | 10 ++--
MD5 | 41 +++++++++++--------
NAMESPACE | 13 ++++--
NEWS |only
R/XLgeneric.r |only
R/XLoneWay.r | 29 +++++++-------
R/exploratoryUtils.r | 32 +++++++++++----
R/regressionSummaries.r | 4 +
R/utilities.r | 8 +++
README.md |only
inst/examples/Ex1way.r | 3 -
inst/examples/Ex2way.r | 3 -
inst/examples/ExGeneric.r |only
inst/examples/ExOpen.r | 10 ++--
inst/examples/ExRegress.r | 1
inst/examples/ExUnivar.r | 3 -
man/XLgeneric.Rd |only
man/XLoneWay.Rd | 60 +++++++++++++++--------------
man/XLregresSummary.Rd | 41 ++++++++++---------
man/XLtwoWay.Rd | 95 +++++++++++++++++++++++++---------------------
man/XLuniVariate.Rd | 69 ++++++++++++++++-----------------
man/XLwriteOpen.Rd | 56 +++++++++++++--------------
man/rangeString.Rd | 71 ++++++++++++++++------------------
man/table1xls-package.Rd | 4 -
24 files changed, 302 insertions(+), 251 deletions(-)
Title: Mapping Fisheries Data and Spatial Analysis Tools
Diff between PBSmapping versions 2.66.53 dated 2013-05-09 and 2.67.60 dated 2014-04-05
Description: This software has evolved from fisheries research conducted at the
Pacific Biological Station (PBS) in Nanaimo, British Columbia, Canada. It
extends the R language to include two-dimensional plotting features similar
to those commonly available in a Geographic Information System (GIS).
Embedded C code speeds algorithms from computational geometry, such as
finding polygons that contain specified point events or converting between
longitude-latitude and Universal Transverse Mercator (UTM) coordinates.
Additionally, we include C++ code developed by Angus Johnson for the Clipper
library. PBSmapping also includes data for a global shoreline and other
data sets in the public domain.
The R directory '.../library/PBSmapping/doc' offers a complete user's
guide PBSmapping-UG.pdf, which should be consulted to use all functions in
the package effectively.
Author: Jon T. Schnute
Maintainer: Rowan Haigh
PBSmapping-2.66.53/PBSmapping/inst/doc/PBSmappingIntro.R |only
PBSmapping-2.66.53/PBSmapping/inst/doc/PBSmappingIntro.Rnw |only
PBSmapping-2.67.60/PBSmapping/DESCRIPTION | 47 ++++++-------
PBSmapping-2.67.60/PBSmapping/MD5 | 18 ++--
PBSmapping-2.67.60/PBSmapping/R/PBSfigs.r | 12 +--
PBSmapping-2.67.60/PBSmapping/R/PBSmapping.r | 30 +++++---
PBSmapping-2.67.60/PBSmapping/R/tempCode.r | 4 -
PBSmapping-2.67.60/PBSmapping/inst/doc/ChangeLog.txt | 13 +++
PBSmapping-2.67.60/PBSmapping/inst/doc/PBSmappingIntro.pdf |binary
PBSmapping-2.67.60/PBSmapping/src/clipperWrapper.cpp | 14 +--
PBSmapping-2.67.60/PBSmapping/src/gshhs.h | 4 -
11 files changed, 80 insertions(+), 62 deletions(-)
Title: A smarter JSON encoder/decoder for R
Diff between jsonlite versions 0.9.5 dated 2014-03-27 and 0.9.6 dated 2014-04-05
Description: This package is a fork of the RJSONIO package by Duncan Temple
Lang. It builds on the same libjson c++ parser, but implements a smarter
mapping between JSON data and R classes. The vignette describes
the behavior in great detail. In addition to drop-in replacements for
toJSON and fromJSON, the package contains functions to serialize objects
and many unit tests to make verify that all edge cases are encoded and
decoded consistently for use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Jonathan Wallace
Maintainer: Jeroen Ooms
DESCRIPTION | 8 ++++----
MD5 | 24 +++++++++++++-----------
NEWS | 8 ++++++--
R/asJSON.character.R | 6 +++++-
R/asJSON.data.frame.R | 2 +-
R/asJSON.list.R | 4 +---
R/asJSON.logical.R | 6 +++++-
R/asJSON.numeric.R | 6 +++++-
R/cleannames.R |only
R/fromJSON.R | 1 +
R/stop.R |only
R/toJSON.R | 4 ++--
inst/tests/test-libjson-utf8.R | 39 ++++++++++++++++++++++-----------------
man/fromJSON.Rd | 6 +++++-
14 files changed, 70 insertions(+), 44 deletions(-)
Title: Various R programming tools for plotting data
Diff between gplots versions 2.12.1 dated 2013-10-17 and 2.13.0 dated 2014-04-05
Description: Various R programming tools for plotting data
Author: Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert
Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin
Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz, Bill
Venables
Maintainer: Gregory R. Warnes
ChangeLog | 26 ++++++++++++++++
DESCRIPTION | 10 +++---
MD5 | 18 +++++------
NEWS | 22 ++++++++++++-
R/heatmap.2.R | 88 +++++++++++++++++++++++++++++++++++--------------------
inst/ChangeLog | 26 ++++++++++++++++
inst/NEWS | 22 ++++++++++++-
man/heatmap.2.Rd | 65 +++++++++++++++++++++++++---------------
man/lmplot2.Rd | 2 -
man/lowess.Rd | 2 -
10 files changed, 205 insertions(+), 76 deletions(-)
Title: Bayesian bandwidth estimation for multivariate kernel regression
with Gaussian error
Diff between bbemkr versions 1.6 dated 2013-12-17 and 2.0 dated 2014-04-05
Description: Bayesian bandwidth estimation for Nadaraya-Watson type
multivariate kernel regression with Gaussian error density
Author: Han Lin Shang and Xibin Zhang
Maintainer: Han Lin Shang
ChangeLog | 4 ++++
DESCRIPTION | 10 +++++-----
MD5 | 11 ++++++++---
NAMESPACE | 2 ++
build |only
inst |only
vignettes |only
7 files changed, 19 insertions(+), 8 deletions(-)
Title: Command line optional and positional argument parser.
Diff between argparse versions 1.0.0 dated 2014-04-04 and 1.0.1 dated 2014-04-05
Description: A command line parser to
be used with Rscript to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis. Ports examples from the argparse Python module by the
Python Software Foundation. Ports examples from the getopt package by Allen
Day.
Maintainer: Trevor L Davis
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
NEWS | 4 ++++
inst/doc/argparse.pdf |binary
tests/testthat/test-argparse.R | 2 +-
5 files changed, 12 insertions(+), 8 deletions(-)