Sat, 12 Apr 2014

Package RSiteCatalyst updated to version 1.3.3 with previous version 1.3.2 dated 2014-03-24

Title: Adobe Analytics Reporting API
Description: Functions for accessing the Adobe Analytics Reporting API
Author: Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch

Diff between RSiteCatalyst versions 1.3.2 dated 2014-03-24 and 1.3.3 dated 2014-04-12

 RSiteCatalyst-1.3.2/RSiteCatalyst/man/RSiteCatalyst-package.Rd     |only
 RSiteCatalyst-1.3.3/RSiteCatalyst/DESCRIPTION                      |    8 
 RSiteCatalyst-1.3.3/RSiteCatalyst/MD5                              |   83 ++--
 RSiteCatalyst-1.3.3/RSiteCatalyst/NEWS                             |    7 
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/CancelReport.R                 |   28 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetAdminConsoleLog.R           |   35 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetAvailableElements.R         |   26 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetAvailableMetrics.R          |   28 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetEVars.R                     |   23 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetRealTimeConfiguration.R     |   23 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetRealTimeReport.R            |   59 +++
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetReportQueue.R               |   25 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetReportSuites.R              |   21 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetSegments.R                  |   25 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetSuccessEvents.R             |   24 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetTokenCount.R                |   28 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetTrafficVars.R               |   23 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetUsageLog.R                  |   31 +
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/QueueOvertime.R                |   78 ++++
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/QueueRanked.R                  |   87 ++++
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/QueueTrended.R                 |   85 ++++
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/RSiteCatalyst-package.R        |only
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/SCAuth.R                       |   38 ++
 RSiteCatalyst-1.3.3/RSiteCatalyst/R/SaveRealTimeConfiguration.R    |   40 ++
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/CancelReport.Rd              |   39 +-
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetAdminConsoleLog.Rd        |   55 +--
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetAvailableElements.Rd      |   33 -
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetAvailableMetrics.Rd       |   34 -
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetEVars.Rd                  |   35 -
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetRealTimeConfiguration.Rd  |   44 +-
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetRealTimeReport.Rd         |  137 ++++---
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetReportQueue.Rd            |   35 -
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetReportSuites.Rd           |   29 -
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetSegments.Rd               |   37 +-
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetSuccessEvents.Rd          |   34 -
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetTokenCount.Rd             |   39 +-
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetTrafficVars.Rd            |   36 --
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetUsageLog.Rd               |   50 +-
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/QueueOvertime.Rd             |  123 +++---
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/QueueRanked.Rd               |  160 ++++----
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/QueueTrended.Rd              |  179 +++++-----
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/RSiteCatalyst.Rd             |only
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/SCAuth.Rd                    |   59 +--
 RSiteCatalyst-1.3.3/RSiteCatalyst/man/SaveRealTimeConfiguration.Rd |   82 ++--
 44 files changed, 1399 insertions(+), 666 deletions(-)

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Package Rcsdp updated to version 0.1.53 with previous version 0.1.52 dated 2013-04-20

Title: R interface to the CSDP semidefinite programming library
Description: R interface to the CSDP semidefinite programming library. Installs version 6.1.1 of CSDP from the COIN-OR website if required. An existing installation of CSDP may be used by passing the proper configure arguments to the installation command. See the INSTALL file for further details.
Author: Hector Corrada Bravo (CSDP by Brian Borchers)
Maintainer: Hector Corrada Bravo

Diff between Rcsdp versions 0.1.52 dated 2013-04-20 and 0.1.53 dated 2014-04-12

 DESCRIPTION |   17 ++++++-----------
 MD5         |    2 +-
 2 files changed, 7 insertions(+), 12 deletions(-)

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Package opencpu updated to version 1.4.0 with previous version 1.2.3 dated 2014-03-10

Title: The OpenCPU system for embedded scientific computing and reproducible research.
Description: The OpenCPU system exposes an HTTP API to R for embedded scientific computing. It can be used to build applications with integrated analysis and visualization, or to share and execute data, scripts or reports on centralized servers. The OpenCPU server can run either as a single-user server inside the interactive R session (using httpuv), or as a cloud server that builds on Ubuntu Linux and rApache. The current R package forms the core of the framework. When loaded in R, it automatically initiates the single-user server and displays the web address in the console. For more information, visit the OpenCPU website.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms

Diff between opencpu versions 1.2.3 dated 2014-03-10 and 1.4.0 dated 2014-04-12

 DESCRIPTION                  |   35 -
 MD5                          |   34 -
 NEWS                         |    3 
 R/error2file.R               |    2 
 R/github_install.R           |    4 
 R/httpget_package.R          |    4 
 R/multipart.R                |    1 
 R/parse_arg.R                |  152 +++-----
 R/parse_arg_prim.R           |   15 
 R/rapachehandler.R           |    5 
 R/req.R                      |    4 
 R/session.R                  |   17 
 R/stop.R                     |only
 build/vignette.rds           |binary
 inst/doc/opencpu-server.R    |only
 inst/doc/opencpu-server.Rnw  |  781 ++++++++++++++++++++-----------------------
 inst/doc/opencpu-server.pdf  |binary
 inst/test/index.html         |    6 
 vignettes/opencpu-server.Rnw |  781 ++++++++++++++++++++-----------------------
 19 files changed, 870 insertions(+), 974 deletions(-)

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Package hydroPSO updated to version 0.3-4 with previous version 0.3-3 dated 2013-06-06

Title: Particle Swarm Optimisation, with focus on Environmental Models
Description: This package implements a state-of-the-art version of the Particle Swarm Optimisation (PSO) algorithm (SPSO-2011 and SPSO-2007 capable). hydroPSO can be used as a replacement of the 'optim' R function for (global) optimization of non-smooth and non-linear functions. However, the main focus of hydroPSO is the calibration of environmental and other real-world models that need to be executed from the system console. hydroPSO is model-independent, allowing the user to easily interface any computer simulation model with the calibration engine (PSO). hydroPSO communicates with the model through the model's own input and output files, without requiring access to the model's source code. Several PSO variants and controlling options are included to fine-tune the performance of the calibration engine to different calibration problems. An advanced sensitivity analysis function together with user-friendly plotting summaries facilitate the interpretation and assessment of the calibration results. hydroPSO is parallel-capable, to alleviate the computational burden of complex models with "long" execution time. Bugs reports/comments/questions are very welcomed (in English, Spanish or Italian).
Author: Mauricio Zambrano-Bigiarini [aut, cre], Rodrigo Rojas [ctb]
Maintainer: Mauricio Zambrano-Bigiarini

Diff between hydroPSO versions 0.3-3 dated 2013-06-06 and 0.3-4 dated 2014-04-12

 DESCRIPTION               |   40 +++----------
 MD5                       |   40 ++++++-------
 NAMESPACE                 |    2 
 NEWS                      |   50 ++++++++++++++++-
 R/ModifyInputFile.R       |   22 ++++++-
 R/PSO_v2013.R             |   60 +++++++++++++-------
 R/lhoat.R                 |  132 ++++++++++++++++++++++++----------------------
 R/params2ecdf.R           |    3 -
 R/pest2hydroPSO.R         |   33 +++++------
 R/plot_2parOF.R           |    2 
 R/plot_NparOF.R           |   17 +++--
 R/plot_particles.R        |   15 ++---
 R/plot_results.R          |   13 ++--
 R/read_out.R              |    5 +
 R/verification.R          |    9 +--
 R/wquantile.R             |    4 -
 man/ReadPlot_params.Rd    |    4 -
 man/ReadPlot_particles.Rd |    2 
 man/ReadPlot_results.Rd   |    2 
 man/hydroPSO-package.Rd   |   10 +--
 man/lhoat.Rd              |   29 ++++++----
 21 files changed, 285 insertions(+), 209 deletions(-)

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New package hasseDiagram with initial version 0.1
Package: hasseDiagram
Type: Package
Title: Drawing Hasse diagram
Version: 0.1
Date: 2014-02-13
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek
Depends: Rgraphviz (>= 2.6.0), grid (>= 3.0.2)
Description: Drawing Hasse diagram - visualization of transitive reduction of a finite partially ordered set.
License: MIT + file LICENSE
Packaged: 2014-04-12 10:09:02 UTC; Krzysztof
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-12 23:27:47

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Package fastM updated to version 0.0-2 with previous version 0.0-1 dated 2014-02-27

Title: Fast Computation of Multivariate M-estimators
Description: The package implements the new algorithm for fast computation of M-scatter matrices using a partial Newton-Raphson procedure for several estimators.
Author: Lutz Duembgen, Klaus Nordhausen, Heike Schuhmacher
Maintainer: Klaus Nordhausen

Diff between fastM versions 0.0-1 dated 2014-02-27 and 0.0-2 dated 2014-04-12

 DESCRIPTION          |   10 +++++-----
 MD5                  |   16 ++++++++--------
 inst/ChangeLog       |    5 ++++-
 man/DUEMBGENshape.Rd |    8 ++++----
 man/MVTMLE.Rd        |   12 ++++++------
 man/MVTMLE0r.Rd      |    6 +++---
 man/MVTMLEsymm.Rd    |    8 ++++----
 man/TYLERshape.Rd    |   11 ++++++-----
 man/fastM-package.Rd |    8 ++++----
 9 files changed, 44 insertions(+), 40 deletions(-)

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Package earlywarnings updated to version 1.0.59 with previous version 1.0.38 dated 2013-03-15

Title: Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
Description: The Early-Warning-Signals Toolbox provides methods for estimating statistical changes in timeseries that can be used for identifying nearby critical transitions. Based on Dakos et al (2012) Methods for Detecting Early Warnings of Critical Transitions in Time Series Illustrated Using Simulated Ecological Data. PLoS ONE 7(7):e41010
Author: Vasilis Dakos , with contributions from S.R. Carpenter, T. Cline, L. Lahti
Maintainer: Vasilis Dakos

Diff between earlywarnings versions 1.0.38 dated 2013-03-15 and 1.0.59 dated 2014-04-12

 DESCRIPTION                |   32 -
 MD5                        |   56 +--
 NAMESPACE                  |   14 
 R/BDSboot.R                |  105 +++---
 R/bdstest_ews.R            |  308 +++++++++---------
 R/ch_ews.R                 |  191 ++++++-----
 R/data.R                   |    8 
 R/ddjnonparam_ews.R        |  301 ++++++++---------
 R/earlywarnings-internal.R |  226 +++++--------
 R/firstlib.R               |    9 
 R/generic_ews.R            |  468 +++++++++++++++------------
 R/potential_ews.R          |  639 ++++++++++++++++++++++----------------
 R/qda_ews.R                |  755 ++++++++++++++++++---------------------------
 R/sensitivity_ews.R        |  514 +++++++++++++++++++-----------
 R/surrogates_ews.R         |  409 +++++++++++++-----------
 R/utils.R                  |only
 man/PlotPotential.Rd       |only
 man/UnivariateGrouping.Rd  |only
 man/YD2PB_grayscale.Rd     |    6 
 man/bdstest_ews.Rd         |   92 ++---
 man/ch_ews.Rd              |   72 ++--
 man/circulation.Rd         |    6 
 man/ddjnonparam_ews.Rd     |  106 +++---
 man/find.optima.Rd         |only
 man/foldbif.Rd             |    7 
 man/generic_ews.Rd         |  143 ++++----
 man/livpotential_ews.Rd    |   99 +++--
 man/movpotential_ews.Rd    |   81 ++--
 man/qda_ews.Rd             |   56 +--
 man/sensitivity_ews.Rd     |  100 +++--
 man/surrogates_ews.Rd      |  106 +++---
 31 files changed, 2591 insertions(+), 2318 deletions(-)

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New package EntropyEstimation with initial version 0.1
Package: EntropyEstimation
Type: Package
Title: Tools for the estimation of entropy and related quantities.
Version: 0.1
Date: 2014-04-06
Author: Lijuan Cao and Michael Grabchak
Maintainer: Michael Grabchak
Description: This package contains methods for the estimation of Shannon's entropy, variants of Renyi's entropy, mutual information, and Kullback-Leibler divergence. The estimators used have a bias that decays exponentially fast.
License: GPL (>= 3)
URL: http://math2.uncc.edu/~mgrabcha/research.html
Packaged: 2014-04-12 04:06:04 UTC; fionacao
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 00:34:45

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Package BootPR updated to version 0.60 with previous version 0.59 dated 2014-04-01

Title: Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Description: Bias-Corrected Forecasting and Bootstrap Prediction Intervals for Autoregressive Time Series
Author: Jae. H. Kim
Maintainer: Jae H. Kim

Diff between BootPR versions 0.59 dated 2014-04-01 and 0.60 dated 2014-04-12

 DESCRIPTION           |    8 ++++----
 MD5                   |   34 +++++++++++++++++-----------------
 R/Boot.PI.R           |    2 +-
 R/BootAfterBoot.PI.R  |    2 +-
 R/BootAfterBootT.PI.R |    2 +-
 R/BootT.PI.R          |    2 +-
 R/Bootstrap.R         |    2 +-
 R/BootstrapB.R        |    2 +-
 R/BootstrapT.R        |    2 +-
 R/BootstrapTB.R       |    2 +-
 R/OLS.AR.R            |    4 ++--
 R/OLS.ART.R           |    4 ++--
 R/Plot.Fore.R         |   13 ++++++-------
 R/Plot.PI.R           |   14 ++++++--------
 R/ShamanStine1.PI.R   |    2 +-
 R/ShamanStine1T.PI.R  |    2 +-
 R/ShamanStine2.PI.R   |    2 +-
 R/ShamanStine2T.PI.R  |    2 +-
 18 files changed, 49 insertions(+), 52 deletions(-)

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