Title: Sure Independence Screening
Diff between SIS versions 0.6 dated 2010-09-06 and 0.7 dated 2014-04-15
Description: (Iterative) Sure Independence Screening for Generalized Linear Models and Cox's Proportional Hazards Models
Author: Jianqing Fan, Yang Feng, Diego Franco Saldana, Richard Samworth, Yichao Wu
Maintainer: Diego Franco Saldana
SIS-0.6/SIS/R/SIS.r |only
SIS-0.6/SIS/R/wtLassoScadCOX.r |only
SIS-0.6/SIS/R/wtLassoScadGLM.r |only
SIS-0.6/SIS/bak |only
SIS-0.6/SIS/data |only
SIS-0.6/SIS/man/COXvanISISscad.Rd |only
SIS-0.6/SIS/man/GLMvanISISscad.Rd |only
SIS-0.6/SIS/man/getfinalSCADcoef.Rd |only
SIS-0.6/SIS/man/getfinalSCADcoefCOX.Rd |only
SIS-0.6/SIS/man/heart.data.Rd |only
SIS-0.6/SIS/man/lung.data.Rd |only
SIS-0.6/SIS/man/scadcox.Rd |only
SIS-0.6/SIS/man/scadglm.Rd |only
SIS-0.6/SIS/man/wtlassocox.Rd |only
SIS-0.6/SIS/man/wtlassoglm.Rd |only
SIS-0.6/SIS/src |only
SIS-0.7/SIS/DESCRIPTION | 18 +-
SIS-0.7/SIS/MD5 |only
SIS-0.7/SIS/NAMESPACE | 9 -
SIS-0.7/SIS/R/SIS.R |only
SIS-0.7/SIS/R/margcoef.R |only
SIS-0.7/SIS/R/obtainindex.R |only
SIS-0.7/SIS/R/partialfits.r |only
SIS-0.7/SIS/R/predict.SIS.R |only
SIS-0.7/SIS/R/print.SIS.R |only
SIS-0.7/SIS/R/setsize.R |only
SIS-0.7/SIS/R/standardize.R |only
SIS-0.7/SIS/man/SIS.Rd | 297 ++++++++++++++++++++-------------
SIS-0.7/SIS/man/predict.SIS.Rd |only
SIS-0.7/SIS/man/print.SIS.Rd |only
30 files changed, 198 insertions(+), 126 deletions(-)
Title: Fitting Semiparametric Symmetric Regression Models
Diff between ssym versions 1.1 dated 2014-04-04 and 1.2 dated 2014-04-15
Description: This package allows to fit a semiparametric regression model suitable for data set analysis in which the conditional distribution of the response is symmetric and continuous.
Author: Luis Hernando Vanegas
Maintainer: Luis Hernando Vanegas
DESCRIPTION | 10
MD5 | 20 -
R/itpM.R | 212 ++++++++++++++-
R/itpM2.R | 461 +++++++++++++++++++++++++--------
R/ssym.l.R | 714 +++++++++++++++++++++++++++++++++++++++-------------
R/ssym.nl.R | 116 ++++----
R/summary.ssym.R | 34 +-
data/Claims.rda |only
man/Claims.Rd |only
man/ssym-package.Rd | 8
man/ssym.l.Rd | 127 ++++++---
man/ssym.nl.Rd | 92 ++++++
12 files changed, 1383 insertions(+), 411 deletions(-)
Title: Simultaneous inference for diversity indices.
Diff between simboot versions 0.2-4 dated 2013-08-13 and 0.2-5 dated 2014-04-15
Description: Package simboot provides estimation of simultaneous bootstrap and asymptotic confidence intervals for diversity indices, namely the Shannon and the Simpson index. Several pre--specified multiple comparison types are available to choose. Further user--defined contrast matrices are applicable. In addition, simboot estimates adjusted as well as unadjusted p--values for two of the three proposed bootstrap methods. Further simboot allows for comparing biological diversities of two or more groups while simultaneously testing a user-defined selection of Hill numbers of orders q, which are considered as appropriate and useful indices for measuring diversity.
Author: Ralph Scherer, Philip Pallmann
Maintainer: Ralph Scherer
DESCRIPTION | 10 -
MD5 | 72 ++++++-------
NAMESPACE | 3
NEWS | 60 ++++++-----
R/Boutrp.R | 32 +++---
R/CCdrp.R | 60 +++++------
R/SCIrp.R | 90 ++++++++---------
R/Simpson.R | 12 +-
R/WYht.R | 260 ++++++++++++++++++++++++-------------------------
R/asht.R | 14 +-
R/contrMat.R | 274 ++++++++++++++++++++++++++--------------------------
R/estShannonf.R | 76 +++++++-------
R/estSimpson.R | 18 +--
R/estSimpsonf.R | 84 +++++++--------
R/estThetaRow.R | 40 +++----
R/mcpHill.R | 190 ++++++++++++++++++------------------
R/rpht.R | 58 +++++------
R/tsht.R | 268 +++++++++++++++++++++++++-------------------------
README.md | 38 +++----
man/Boutrp.Rd | 24 ++--
man/CCdrp.Rd | 20 +--
man/SCIrp.Rd | 24 ++--
man/Simpson.Rd | 46 ++++----
man/WYht.Rd | 36 +++---
man/asht.Rd | 42 +++----
man/contrMat.Rd | 106 ++++++++++----------
man/corrmatgen.Rd | 40 +++----
man/estShannon.Rd | 50 ++++-----
man/estShannonWY.Rd | 68 ++++++------
man/estShannonf.Rd | 82 +++++++--------
man/estSimpson.Rd | 42 +++----
man/estSimpsonf.Rd | 60 +++++------
man/estThetaRow.Rd | 48 ++++-----
man/rpht.Rd | 34 +++---
man/simboot.Rd | 158 ++++++++++++++---------------
man/tsht.Rd | 34 +++---
man/waldci.Rd | 26 ++--
37 files changed, 1305 insertions(+), 1294 deletions(-)
Title: Various confidence interval methods for proportions
Diff between PropCIs versions 0.2-4 dated 2013-08-04 and 0.2-5 dated 2014-04-15
Description: Computes two-sample confidence intervals for single, paired and independent proportions
Author: Ralph Scherer
Maintainer: Ralph Scherer
DESCRIPTION | 10 +++++-----
MD5 | 4 ++--
man/PropCIs-package.Rd | 6 +++---
3 files changed, 10 insertions(+), 10 deletions(-)
Title: Multiple Aggregation Prediction Algorithm
Diff between MAPA versions 1.2 dated 2014-03-24 and 1.3 dated 2014-04-15
Description: This package contains functions and wrappers for using the Multiple Aggregation Prediction Algorithm, proposed by Kourentzes et al. (2014).
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes
ChangeLog |only
DESCRIPTION | 6 -
MD5 | 15 ++-
R/MAPA.R | 205 +++++++++++++++++++++++++++++++++++-------------------
man/mapa.Rd | 5 +
man/mapacalc.Rd | 5 +
man/mapaest.Rd | 3
man/mapafor.Rd | 5 +
man/mapasimple.Rd | 5 +
9 files changed, 163 insertions(+), 86 deletions(-)
Title: GEV conditional density estimation network
Diff between GEVcdn versions 1.1.2 dated 2012-11-14 and 1.1.3 dated 2014-04-15
Description: A flexible nonlinear modelling framework for nonstationary
generalized extreme value analysis in hydroclimatology
Author: Alex J. Cannon
Maintainer: Alex J. Cannon
DESCRIPTION | 6 ++--
MD5 | 8 ++---
man/gevcdn.bag.Rd | 67 ++++++++++++++++++++++++------------------------
man/gevcdn.bootstrap.Rd | 49 +++++++++++++++++------------------
man/gevcdn.fit.Rd | 14 +++++++---
5 files changed, 77 insertions(+), 67 deletions(-)
Title: Geometric morphometric analyses of 2d/3d landmark data
Diff between geomorph versions 1.1-6 dated 2014-01-28 and 2.0 dated 2014-04-15
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation
Author: Dean Adams, Erik Otarola-Castillo, Emma Sherratt
Maintainer: Dean Adams
geomorph-1.1-6/geomorph/R/geomorph.r |only
geomorph-1.1-6/geomorph/man/curves2d.Rd |only
geomorph-1.1-6/geomorph/man/digit.curves.Rd |only
geomorph-2.0/geomorph/DESCRIPTION | 11 -
geomorph-2.0/geomorph/MD5 | 156 ++++++++++------
geomorph-2.0/geomorph/NAMESPACE | 8
geomorph-2.0/geomorph/NEWS | 56 +++++
geomorph-2.0/geomorph/R/arrayspecs.r |only
geomorph-2.0/geomorph/R/bilat.symmetry.r |only
geomorph-2.0/geomorph/R/build.template.r |only
geomorph-2.0/geomorph/R/compare.evol.rates.r |only
geomorph-2.0/geomorph/R/compare.modular.partitions.r |only
geomorph-2.0/geomorph/R/define.modules.R |only
geomorph-2.0/geomorph/R/define.sliders.2d.r |only
geomorph-2.0/geomorph/R/define.sliders.3d.r |only
geomorph-2.0/geomorph/R/digit.fixed.r |only
geomorph-2.0/geomorph/R/digitize2d.r |only
geomorph-2.0/geomorph/R/digitsurface.r |only
geomorph-2.0/geomorph/R/editTemplate.r |only
geomorph-2.0/geomorph/R/estimate.missing.r |only
geomorph-2.0/geomorph/R/findMeanSpec.R |only
geomorph-2.0/geomorph/R/fixed.angle.r |only
geomorph-2.0/geomorph/R/geomorph.support.code.r |only
geomorph-2.0/geomorph/R/gpagen.r |only
geomorph-2.0/geomorph/R/morphol.disparity.R |only
geomorph-2.0/geomorph/R/morphol.integr.r |only
geomorph-2.0/geomorph/R/pairwiseD.test.r |only
geomorph-2.0/geomorph/R/phylo.pls.R |only
geomorph-2.0/geomorph/R/physignal.r |only
geomorph-2.0/geomorph/R/plotAllSpecimens.r |only
geomorph-2.0/geomorph/R/plotAllometry.r |only
geomorph-2.0/geomorph/R/plotGMPhyloMorphoSpace.r |only
geomorph-2.0/geomorph/R/plotRefToTarget.r |only
geomorph-2.0/geomorph/R/plotTangentSpace.r |only
geomorph-2.0/geomorph/R/plotspec.r |only
geomorph-2.0/geomorph/R/procD.lm.r |only
geomorph-2.0/geomorph/R/read.morphologika.r |only
geomorph-2.0/geomorph/R/read.ply.r |only
geomorph-2.0/geomorph/R/readland.nts.r |only
geomorph-2.0/geomorph/R/readland.tps.r |only
geomorph-2.0/geomorph/R/readmulti.nts.r |only
geomorph-2.0/geomorph/R/trajectory.analysis.r |only
geomorph-2.0/geomorph/R/two.b.pls.r |only
geomorph-2.0/geomorph/R/two.d.array.r |only
geomorph-2.0/geomorph/R/warpRefMesh.R |only
geomorph-2.0/geomorph/R/writeland.tps.r |only
geomorph-2.0/geomorph/data/hummingbirds.rda |binary
geomorph-2.0/geomorph/data/mosquito.rda |binary
geomorph-2.0/geomorph/data/motionpaths.rda |binary
geomorph-2.0/geomorph/data/plethShapeFood.rda |only
geomorph-2.0/geomorph/data/plethodon.rda |binary
geomorph-2.0/geomorph/data/plethspecies.rda |binary
geomorph-2.0/geomorph/data/ratland.rda |binary
geomorph-2.0/geomorph/data/scallopPLY.rda |binary
geomorph-2.0/geomorph/data/scallops.rda |binary
geomorph-2.0/geomorph/man/arrayspecs.Rd | 24 --
geomorph-2.0/geomorph/man/bilat.symmetry.Rd | 52 ++---
geomorph-2.0/geomorph/man/buildtemplate.Rd | 53 +++--
geomorph-2.0/geomorph/man/compare.evol.rates.Rd | 47 +++-
geomorph-2.0/geomorph/man/compare.modular.partitions.Rd | 5
geomorph-2.0/geomorph/man/define.modules.Rd |only
geomorph-2.0/geomorph/man/define.sliders.2d.Rd | 19 -
geomorph-2.0/geomorph/man/define.sliders.3d.Rd | 33 +--
geomorph-2.0/geomorph/man/digit.fixed.Rd | 52 ++---
geomorph-2.0/geomorph/man/digitize2d.Rd | 61 +++---
geomorph-2.0/geomorph/man/digitsurface.Rd | 53 ++---
geomorph-2.0/geomorph/man/editTemplate.Rd | 22 +-
geomorph-2.0/geomorph/man/estimate.missing.Rd | 77 ++++++-
geomorph-2.0/geomorph/man/findMeanSpec.Rd |only
geomorph-2.0/geomorph/man/fixed.angle.Rd | 1
geomorph-2.0/geomorph/man/gpagen.Rd | 25 +-
geomorph-2.0/geomorph/man/hummingbirds.Rd | 2
geomorph-2.0/geomorph/man/morphol.disparity.Rd |only
geomorph-2.0/geomorph/man/morphol.integr.Rd | 65 ++++--
geomorph-2.0/geomorph/man/mosquito.Rd | 2
geomorph-2.0/geomorph/man/motionpaths.Rd | 2
geomorph-2.0/geomorph/man/mshape.Rd | 2
geomorph-2.0/geomorph/man/pairwiseD.test.Rd | 2
geomorph-2.0/geomorph/man/phylo.pls.Rd |only
geomorph-2.0/geomorph/man/physignal.Rd | 80 ++++++--
geomorph-2.0/geomorph/man/plethShapeFood.Rd |only
geomorph-2.0/geomorph/man/plethodon.Rd | 2
geomorph-2.0/geomorph/man/plethspecies.Rd | 2
geomorph-2.0/geomorph/man/plotAllSpecimens.Rd | 2
geomorph-2.0/geomorph/man/plotAllometry.Rd | 94 ++++++---
geomorph-2.0/geomorph/man/plotGMPhyloMorphoSpace.Rd | 21 +-
geomorph-2.0/geomorph/man/plotRefToTarget.Rd | 57 +++--
geomorph-2.0/geomorph/man/plotTangentSpace.Rd | 51 +++--
geomorph-2.0/geomorph/man/plotspec.Rd | 51 +++--
geomorph-2.0/geomorph/man/procD.lm.Rd | 7
geomorph-2.0/geomorph/man/ratland.Rd | 2
geomorph-2.0/geomorph/man/read.morphologika.Rd | 69 +++----
geomorph-2.0/geomorph/man/read.ply.Rd | 14 -
geomorph-2.0/geomorph/man/read.vrml.Rd | 55 -----
geomorph-2.0/geomorph/man/readland.nts.Rd | 17 +
geomorph-2.0/geomorph/man/readland.tps.Rd | 9
geomorph-2.0/geomorph/man/readmulti.nts.Rd | 14 +
geomorph-2.0/geomorph/man/scallopPLY.Rd | 2
geomorph-2.0/geomorph/man/scallops.Rd | 2
geomorph-2.0/geomorph/man/trajectory.analysis.Rd | 6
geomorph-2.0/geomorph/man/two.b.pls.Rd |only
geomorph-2.0/geomorph/man/two.d.array.Rd | 4
geomorph-2.0/geomorph/man/warpRefMesh.Rd |only
geomorph-2.0/geomorph/man/writeland.tps.Rd | 2
104 files changed, 835 insertions(+), 558 deletions(-)
Title: Modeling and Inferring Gene Networks
Diff between GeneNet versions 1.2.8 dated 2013-09-15 and 1.2.9 dated 2014-04-15
Description: GeneNet is a package for analyzing gene expression
(time series) data with focus on the inference of gene networks.
In particular, GeneNet implements the methods of Schaefer and
Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007)
for learning large-scale gene association networks (including
assignment of putative directions).
Author: Juliane Schaefer, Rainer Opgen-Rhein, and
Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
NAMESPACE | 3 +++
NEWS | 6 ++++++
4 files changed, 18 insertions(+), 9 deletions(-)
Title: R Interface to CoreArray Genomic Data Structure (GDS) files
Diff between gdsfmt versions 1.0.3 dated 2014-03-19 and 1.0.4 dated 2014-04-15
Description: This package provides a high-level R interface to CoreArray
Genomic Data Structure (GDS) data files, which are portable across
platforms and include hierarchical structure to store multiple scalable
array-oriented data sets with metadata information. It is suited for
large-scale datasets, especially for data which are much larger than the
available random-access memory. The gdsfmt package offers the efficient
operations specifically designed for integers with less than 8 bits, since
a single genetic/genomic variant, such like single-nucleotide polymorphism,
usually occupies fewer bits than a byte. It is also allowed to read a GDS
file in parallel with multiple R processes supported by the parallel
package.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
gdsfmt-1.0.3/gdsfmt/src/gdsfmt_init.cpp |only
gdsfmt-1.0.4/gdsfmt/DESCRIPTION | 8
gdsfmt-1.0.4/gdsfmt/MD5 | 144
gdsfmt-1.0.4/gdsfmt/NEWS | 12
gdsfmt-1.0.4/gdsfmt/R/gdsfmt-main.r | 180
gdsfmt-1.0.4/gdsfmt/build/vignette.rds |binary
gdsfmt-1.0.4/gdsfmt/inst/doc/CoreArrayTutorial.pdf |binary
gdsfmt-1.0.4/gdsfmt/inst/unitTests/runit.01.datatype.r | 3
gdsfmt-1.0.4/gdsfmt/inst/unitTests/runit.02.dataconvert.r | 3
gdsfmt-1.0.4/gdsfmt/inst/unitTests/runit.03.dimension.r | 3
gdsfmt-1.0.4/gdsfmt/inst/unitTests/runit.04.datareadwrite.r | 67
gdsfmt-1.0.4/gdsfmt/inst/unitTests/runit.05.attribute.r | 2
gdsfmt-1.0.4/gdsfmt/inst/unitTests/runit.06.apply.r | 112
gdsfmt-1.0.4/gdsfmt/man/add.gdsn.Rd | 23
gdsfmt-1.0.4/gdsfmt/man/addfile.gdsn.Rd | 8
gdsfmt-1.0.4/gdsfmt/man/addfolder.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/append.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/apply.gdsn.Rd | 26
gdsfmt-1.0.4/gdsfmt/man/cleanup.gds.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/closefn.gds.Rd | 4
gdsfmt-1.0.4/gdsfmt/man/clusterApply.gdsn.Rd | 14
gdsfmt-1.0.4/gdsfmt/man/cnt.gdsn.Rd | 4
gdsfmt-1.0.4/gdsfmt/man/compression.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/createfn.gds.Rd | 4
gdsfmt-1.0.4/gdsfmt/man/delete.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/diagnosis.gds.Rd |only
gdsfmt-1.0.4/gdsfmt/man/gds.class.Rd | 2
gdsfmt-1.0.4/gdsfmt/man/gdsfmt-package.Rd | 19
gdsfmt-1.0.4/gdsfmt/man/get.attr.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/index.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/ls.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/moveto.gdsn.Rd |only
gdsfmt-1.0.4/gdsfmt/man/name.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/objdesp.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/openfn.gds.Rd | 7
gdsfmt-1.0.4/gdsfmt/man/put.attr.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/read.gdsn.Rd | 12
gdsfmt-1.0.4/gdsfmt/man/readex.gdsn.Rd | 9
gdsfmt-1.0.4/gdsfmt/man/readmode.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/rename.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/setdim.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/showfile.gds.Rd | 3
gdsfmt-1.0.4/gdsfmt/man/sync.gds.Rd | 4
gdsfmt-1.0.4/gdsfmt/man/write.gdsn.Rd | 3
gdsfmt-1.0.4/gdsfmt/src/CoreArray.cpp | 20
gdsfmt-1.0.4/gdsfmt/src/CoreArray.h | 7
gdsfmt-1.0.4/gdsfmt/src/CoreDEF.h | 254 -
gdsfmt-1.0.4/gdsfmt/src/CoreGDS.cpp | 273 -
gdsfmt-1.0.4/gdsfmt/src/CoreGDS.h | 42
gdsfmt-1.0.4/gdsfmt/src/Makevars | 7
gdsfmt-1.0.4/gdsfmt/src/Makevars.win | 7
gdsfmt-1.0.4/gdsfmt/src/R_CoreArray.cpp |only
gdsfmt-1.0.4/gdsfmt/src/R_GDS.h | 1343 -----
gdsfmt-1.0.4/gdsfmt/src/R_GDS2.h | 721 ++-
gdsfmt-1.0.4/gdsfmt/src/R_GDS_CPP.h |only
gdsfmt-1.0.4/gdsfmt/src/dBase.cpp | 534 +-
gdsfmt-1.0.4/gdsfmt/src/dBase.h | 459 -
gdsfmt-1.0.4/gdsfmt/src/dBit.h | 185
gdsfmt-1.0.4/gdsfmt/src/dBitGDS.cpp | 63
gdsfmt-1.0.4/gdsfmt/src/dBitGDS.h | 518 +-
gdsfmt-1.0.4/gdsfmt/src/dFile.cpp | 104
gdsfmt-1.0.4/gdsfmt/src/dFile.h | 61
gdsfmt-1.0.4/gdsfmt/src/dParallel.cpp | 29
gdsfmt-1.0.4/gdsfmt/src/dParallel.h | 116
gdsfmt-1.0.4/gdsfmt/src/dParallel_Ext.c |only
gdsfmt-1.0.4/gdsfmt/src/dPlatform.cpp | 208
gdsfmt-1.0.4/gdsfmt/src/dPlatform.h | 207
gdsfmt-1.0.4/gdsfmt/src/dStrGDS.h | 38
gdsfmt-1.0.4/gdsfmt/src/dStream.cpp | 78
gdsfmt-1.0.4/gdsfmt/src/dStream.h | 80
gdsfmt-1.0.4/gdsfmt/src/dString.h | 23
gdsfmt-1.0.4/gdsfmt/src/dStruct.cpp | 510 +-
gdsfmt-1.0.4/gdsfmt/src/dStruct.h | 525 +-
gdsfmt-1.0.4/gdsfmt/src/dTrait.h |only
gdsfmt-1.0.4/gdsfmt/src/dType.h | 461 -
gdsfmt-1.0.4/gdsfmt/src/gdsfmt.cpp | 2853 +++++-------
gdsfmt-1.0.4/gdsfmt/src/gdsfmt_deprecated.h |only
77 files changed, 4895 insertions(+), 5549 deletions(-)
Title: Estimation of (Local) False Discovery Rates and Higher Criticism
Diff between fdrtool versions 1.2.11 dated 2013-09-15 and 1.2.12 dated 2014-04-15
Description: This package allows to estimate both tail area-based false
discovery rates (Fdr) as well as local false discovery rates (fdr) for a
variety of null models (p-values, z-scores, correlation coefficients,
t-scores). The proportion of null values and the parameters of the null
distribution are adaptively estimated from the data. In addition, the package
contains functions for non-parametric density estimation (Grenander estimator),
for monotone regression (isotonic regression and antitonic regression with weights),
for computing the greatest convex minorant (GCM) and the least concave majorant (LCM),
for the half-normal and correlation distributions, and for computing
empirical higher criticism (HC) scores and the corresponding decision threshold.
Author: Bernd Klaus and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NEWS | 6 ++++++
R/monoreg.R | 6 +++---
4 files changed, 16 insertions(+), 10 deletions(-)
Title: Efficient effect size computation
Diff between effsize versions 0.4.1 dated 2014-03-13 and 0.5 dated 2014-04-15
Description: This package contains the functions to compute the standardized
effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha and Delaney A).
The computation algorithms have been optimized to allow efficient computation even
with very large data sets.
Author: Marco Torchiano
Maintainer: Marco Torchiano
DESCRIPTION | 15 ++++++++-------
MD5 | 10 ++++++----
R/CohenD.R | 11 +++++------
R/VD_A.R |only
man/VD.A.Rd |only
man/cohen.d.Rd | 10 +++++-----
man/effsize-package.Rd | 15 +++++++++------
7 files changed, 33 insertions(+), 28 deletions(-)
Title: An R interface to the web API of Statistics Sweden
Diff between sweSCB versions 0.3.3 dated 2014-04-01 and 0.3.4 dated 2014-04-15
Description: Interface for the REST API of Statistics Sweden. The
package offers methods to fetch information about the data hierarchy stored
behind the API; extract metadata; fetch actual data; and clean up the
results.
Author: Love Hansson, Thomas Reinholdsson, Mans Magnusson
Maintainer: Mans Magnusson
DESCRIPTION | 12 ++++++------
MD5 | 28 ++++++++++++++--------------
R/getData.R | 3 ---
README.md | 28 +++++++++++-----------------
man/baseURL.Rd | 4 ++--
man/buildPath.Rd | 6 +++---
man/checkForLevels.Rd | 6 +++---
man/deparseLevels.Rd | 4 ++--
man/findData.Rd | 12 ++++++------
man/getContent.Rd | 4 ++--
man/scbGetData.Rd | 30 +++++++++++++++---------------
man/scbGetDims.Rd | 8 ++++----
man/scbGetLevels.Rd | 6 +++---
man/scbGetMetadata.Rd | 8 ++++----
man/sweSCB.Rd | 2 +-
15 files changed, 76 insertions(+), 85 deletions(-)
Title: Sparse Column-wise Inverse Operator
Diff between scio versions 0.4.1 dated 2012-05-06 and 0.6.1 dated 2014-04-15
Description: Sparse Column-wise Inverse Operator for estimating the inverse covariance matrix. Note that this is a preliminary version accompanying the arXiv paper (arXiv:1203.3896) in 2012. This version contains only the minimal set of functions for estimation and cross validation.
Author: Xi (Rossi) LUO and Weidong Liu
Maintainer: Xi (Rossi) LUO
ChangeLog | 8 ++++++++
DESCRIPTION | 16 ++++++----------
MD5 | 15 ++++++++++-----
NAMESPACE | 2 ++
R/likelihood.R |only
R/scio.cv.R |only
R/scio.refit.R |only
man/scio.Rd | 4 ++--
man/scio.cv.Rd |only
man/scio.refit.Rd |only
man/sciopath.Rd | 5 +++--
11 files changed, 31 insertions(+), 19 deletions(-)
Title: Create quizzes in GIFT Format
Diff between RGIFT versions 0.1-4 dated 2013-10-01 and 0.1-5 dated 2014-04-15
Description: This package provides some functions to create quizzes
in the GIFT format. This format is used by several Virtual Learning
Environments such as Moodle.
Author: María José Haro-Delicado, Virgilio Gómez-Rubio and Francisco
Parreño-Torres
Maintainer: Virgilio Gómez-Rubio
RGIFT-0.1-4/RGIFT/inst/doc/CochesBig.sav |only
RGIFT-0.1-4/RGIFT/inst/doc/DExample.R |only
RGIFT-0.1-4/RGIFT/inst/doc/EExample.R |only
RGIFT-0.1-4/RGIFT/inst/doc/MCQExample.R |only
RGIFT-0.1-4/RGIFT/inst/doc/MQExample.R |only
RGIFT-0.1-4/RGIFT/inst/doc/MWQExample.R |only
RGIFT-0.1-4/RGIFT/inst/doc/NQExample.R |only
RGIFT-0.1-4/RGIFT/inst/doc/RGIFT.bib |only
RGIFT-0.1-4/RGIFT/inst/doc/SAQExample.R |only
RGIFT-0.1-4/RGIFT/inst/doc/TFQExample.R |only
RGIFT-0.1-4/RGIFT/inst/doc/UTF8.R |only
RGIFT-0.1-4/RGIFT/inst/doc/exams |only
RGIFT-0.1-5/RGIFT/DESCRIPTION | 8 ++++----
RGIFT-0.1-5/RGIFT/MD5 | 31 ++++++++++++++++---------------
RGIFT-0.1-5/RGIFT/inst/doc/RGIFT.pdf |binary
RGIFT-0.1-5/RGIFT/vignettes |only
16 files changed, 20 insertions(+), 19 deletions(-)
Title: Bayesian Model Averaging with INLA
Diff between INLABMA versions 0.1-3 dated 2013-10-03 and 0.1-4 dated 2014-04-15
Description: Spatial Econometrics models using Bayesian Model Averaging
on models fitted with INLA. The INLA package can be obtained from
http://www.r-inla.org . We recommend the testing version, which can be
downloaded by running:
source("http://www.math.ntnu.no/inla/givemeINLA-testing.R")
Author: Virgilio Gomez Rubio
Maintainer: Virgilio Gomez Rubio
DESCRIPTION | 16 ++++---
MD5 | 20 ++++-----
NAMESPACE | 5 +-
R/BMArho.R | 2
R/SE-utils.R | 37 +++++++++++-------
man/BMA2.Rd | 7 +--
man/BMArho.Rd | 2
man/recompute.impacts.Rd | 6 +-
man/rescalemarg.Rd | 2
man/sem.Rd | 95 ++++++++++++++++++++++++++++++++++++++++++++++-
man/trIrhoWinv.Rd | 2
11 files changed, 151 insertions(+), 43 deletions(-)
Title: Shape-Constrained Additive Regression: a Maximum Likelihood
Approach
Diff between scar versions 0.2-0 dated 2014-04-08 and 0.2-1 dated 2014-04-15
Description: This package computes the maximum likelihood estimator of the generalised additive and index regression with shape constraints. Each additive component function is assumed to obey one of the nine possible shape restrictions: linear, increasing, decreasing, convex, convex increasing, convex decreasing, concave, concave increasing, or concave decreasing.
Author: Yining Chen and Richard Samworth
Maintainer: Yining Chen
DESCRIPTION | 9 ++++-----
MD5 | 14 +++++++-------
NEWS | 8 ++++++--
R/scair.R | 11 +++++++----
man/PhDPublications.Rd | 8 ++++++--
man/scair.Rd | 25 ++++++++++++++++++-------
man/scar-package.Rd | 14 +++++++++-----
man/scar.Rd | 15 +++++++++------
8 files changed, 66 insertions(+), 38 deletions(-)
Title: EMP: Expected Maximum Profit for Credit Scoring.
Diff between EMP versions 1.0 dated 2014-03-31 and 1.0.1 dated 2014-04-15
Description: Functions for estimating EMP (Expected Maximum Profit Measure) in
Credit Scoring, according to Verbraken et al (2014).
Author: Cristian Bravo and Thomas Verbraken
Maintainer: Cristian Bravo
DESCRIPTION | 10 +++++-----
MD5 | 7 ++++---
inst |only
man/EMP-package.Rd | 10 +++++-----
man/EMP_CS.Rd | 5 ++---
5 files changed, 16 insertions(+), 16 deletions(-)