Tue, 15 Apr 2014

Package SIS updated to version 0.7 with previous version 0.6 dated 2010-09-06

Title: Sure Independence Screening
Description: (Iterative) Sure Independence Screening for Generalized Linear Models and Cox's Proportional Hazards Models
Author: Jianqing Fan, Yang Feng, Diego Franco Saldana, Richard Samworth, Yichao Wu
Maintainer: Diego Franco Saldana

Diff between SIS versions 0.6 dated 2010-09-06 and 0.7 dated 2014-04-15

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Package ssym updated to version 1.2 with previous version 1.1 dated 2014-04-04

Title: Fitting Semiparametric Symmetric Regression Models
Description: This package allows to fit a semiparametric regression model suitable for data set analysis in which the conditional distribution of the response is symmetric and continuous.
Author: Luis Hernando Vanegas and Gilberto A. Paula
Maintainer: Luis Hernando Vanegas

Diff between ssym versions 1.1 dated 2014-04-04 and 1.2 dated 2014-04-15

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Package simboot updated to version 0.2-5 with previous version 0.2-4 dated 2013-08-13

Title: Simultaneous inference for diversity indices.
Description: Package simboot provides estimation of simultaneous bootstrap and asymptotic confidence intervals for diversity indices, namely the Shannon and the Simpson index. Several pre--specified multiple comparison types are available to choose. Further user--defined contrast matrices are applicable. In addition, simboot estimates adjusted as well as unadjusted p--values for two of the three proposed bootstrap methods. Further simboot allows for comparing biological diversities of two or more groups while simultaneously testing a user-defined selection of Hill numbers of orders q, which are considered as appropriate and useful indices for measuring diversity.
Author: Ralph Scherer, Philip Pallmann
Maintainer: Ralph Scherer

Diff between simboot versions 0.2-4 dated 2013-08-13 and 0.2-5 dated 2014-04-15

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 37 files changed, 1305 insertions(+), 1294 deletions(-)

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Package PropCIs updated to version 0.2-5 with previous version 0.2-4 dated 2013-08-04

Title: Various confidence interval methods for proportions
Description: Computes two-sample confidence intervals for single, paired and independent proportions
Author: Ralph Scherer
Maintainer: Ralph Scherer

Diff between PropCIs versions 0.2-4 dated 2013-08-04 and 0.2-5 dated 2014-04-15

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 3 files changed, 10 insertions(+), 10 deletions(-)

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Package MAPA updated to version 1.3 with previous version 1.2 dated 2014-03-24

Title: Multiple Aggregation Prediction Algorithm
Description: This package contains functions and wrappers for using the Multiple Aggregation Prediction Algorithm, proposed by Kourentzes et al. (2014).
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes

Diff between MAPA versions 1.2 dated 2014-03-24 and 1.3 dated 2014-04-15

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Package GEVcdn updated to version 1.1.3 with previous version 1.1.2 dated 2012-11-14

Title: GEV conditional density estimation network
Description: A flexible nonlinear modelling framework for nonstationary generalized extreme value analysis in hydroclimatology
Author: Alex J. Cannon
Maintainer: Alex J. Cannon

Diff between GEVcdn versions 1.1.2 dated 2012-11-14 and 1.1.3 dated 2014-04-15

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Package geomorph updated to version 2.0 with previous version 1.1-6 dated 2014-01-28

Title: Geometric morphometric analyses of 2d/3d landmark data
Description: Read, manipulate, and digitize landmark data, generate shape variables via Procrustes analysis for points, curves and surfaces, perform shape analyses, and provide graphical depictions of shapes and patterns of shape variation
Author: Dean Adams, Erik Otarola-Castillo, Emma Sherratt
Maintainer: Dean Adams

Diff between geomorph versions 1.1-6 dated 2014-01-28 and 2.0 dated 2014-04-15

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Package GeneNet updated to version 1.2.9 with previous version 1.2.8 dated 2013-09-15

Title: Modeling and Inferring Gene Networks
Description: GeneNet is a package for analyzing gene expression (time series) data with focus on the inference of gene networks. In particular, GeneNet implements the methods of Schaefer and Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007) for learning large-scale gene association networks (including assignment of putative directions).
Author: Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer

Diff between GeneNet versions 1.2.8 dated 2013-09-15 and 1.2.9 dated 2014-04-15

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More information about GeneNet at CRAN
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Package gdsfmt updated to version 1.0.4 with previous version 1.0.3 dated 2014-03-19

Title: R Interface to CoreArray Genomic Data Structure (GDS) files
Description: This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers with less than 8 bits, since a single genetic/genomic variant, such like single-nucleotide polymorphism, usually occupies fewer bits than a byte. It is also allowed to read a GDS file in parallel with multiple R processes supported by the parallel package.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng

Diff between gdsfmt versions 1.0.3 dated 2014-03-19 and 1.0.4 dated 2014-04-15

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Package fdrtool updated to version 1.2.12 with previous version 1.2.11 dated 2013-09-15

Title: Estimation of (Local) False Discovery Rates and Higher Criticism
Description: This package allows to estimate both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
Author: Bernd Klaus and Korbinian Strimmer.
Maintainer: Korbinian Strimmer

Diff between fdrtool versions 1.2.11 dated 2013-09-15 and 1.2.12 dated 2014-04-15

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Package effsize updated to version 0.5 with previous version 0.4.1 dated 2014-03-13

Title: Efficient effect size computation
Description: This package contains the functions to compute the standardized effect sizes for experiments (Cohen d, Hedges g, Cliff delta, Vargha and Delaney A). The computation algorithms have been optimized to allow efficient computation even with very large data sets.
Author: Marco Torchiano
Maintainer: Marco Torchiano

Diff between effsize versions 0.4.1 dated 2014-03-13 and 0.5 dated 2014-04-15

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Package sweSCB updated to version 0.3.4 with previous version 0.3.3 dated 2014-04-01

Title: An R interface to the web API of Statistics Sweden
Description: Interface for the REST API of Statistics Sweden. The package offers methods to fetch information about the data hierarchy stored behind the API; extract metadata; fetch actual data; and clean up the results.
Author: Love Hansson, Thomas Reinholdsson, Mans Magnusson
Maintainer: Mans Magnusson

Diff between sweSCB versions 0.3.3 dated 2014-04-01 and 0.3.4 dated 2014-04-15

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Package scio updated to version 0.6.1 with previous version 0.4.1 dated 2012-05-06

Title: Sparse Column-wise Inverse Operator
Description: Sparse Column-wise Inverse Operator for estimating the inverse covariance matrix. Note that this is a preliminary version accompanying the arXiv paper (arXiv:1203.3896) in 2012. This version contains only the minimal set of functions for estimation and cross validation.
Author: Xi (Rossi) LUO and Weidong Liu
Maintainer: Xi (Rossi) LUO

Diff between scio versions 0.4.1 dated 2012-05-06 and 0.6.1 dated 2014-04-15

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Package RGIFT updated to version 0.1-5 with previous version 0.1-4 dated 2013-10-01

Title: Create quizzes in GIFT Format
Description: This package provides some functions to create quizzes in the GIFT format. This format is used by several Virtual Learning Environments such as Moodle.
Author: María José Haro-Delicado, Virgilio Gómez-Rubio and Francisco Parreño-Torres
Maintainer: Virgilio Gómez-Rubio

Diff between RGIFT versions 0.1-4 dated 2013-10-01 and 0.1-5 dated 2014-04-15

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Package INLABMA updated to version 0.1-4 with previous version 0.1-3 dated 2013-10-03

Title: Bayesian Model Averaging with INLA
Description: Spatial Econometrics models using Bayesian Model Averaging on models fitted with INLA. The INLA package can be obtained from http://www.r-inla.org . We recommend the testing version, which can be downloaded by running: source("http://www.math.ntnu.no/inla/givemeINLA-testing.R")
Author: Virgilio Gomez Rubio , Roger Bivand
Maintainer: Virgilio Gomez Rubio

Diff between INLABMA versions 0.1-3 dated 2013-10-03 and 0.1-4 dated 2014-04-15

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New package HiLMM with initial version 1.0
Package: HiLMM
Type: Package
Title: Estimation of heritability in high dimensional Linear Mixed Models
Version: 1.0
Date: 2014-04-10
Author: Anna Bonnet
Maintainer: Anna Bonnet
Description: HiLMM provides estimation of heritability with confidence intervals in linear mixed models.
License: GPL-2
Packaged: 2014-04-15 13:09:37 UTC; levyleduc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 18:21:12

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New package StereoMorph with initial version 1.0
Package: StereoMorph
Title: Stereo Camera Calibration and Reconstruction
Description: StereoMorph provides functions for the collection of 3D points and curves using a stereo camera setup.
Version: 1.0
Depends: grid
Suggests: rgl
Author: Aaron Olsen, Annat Haber
Maintainer: Aaron Olsen
License: GPL-2
Packaged: 2014-04-15 03:34:20 UTC; aaron
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:47:06

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Package scar updated to version 0.2-1 with previous version 0.2-0 dated 2014-04-08

Title: Shape-Constrained Additive Regression: a Maximum Likelihood Approach
Description: This package computes the maximum likelihood estimator of the generalised additive and index regression with shape constraints. Each additive component function is assumed to obey one of the nine possible shape restrictions: linear, increasing, decreasing, convex, convex increasing, convex decreasing, concave, concave increasing, or concave decreasing.
Author: Yining Chen and Richard Samworth
Maintainer: Yining Chen

Diff between scar versions 0.2-0 dated 2014-04-08 and 0.2-1 dated 2014-04-15

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New package MPCI with initial version 1.0.6
Package: MPCI
Type: Package
Title: Multivariate Process Capability Indices (MPCI)
Version: 1.0.6
Date: 2014-04-13
Author: Edgar Santos-Fernandez, Michele Scagliarini.
Maintainer: Edgar Santos-Fernandez
Description: MPCI package performs the followings Multivariate Process Capability Indices: Shahriari et al. (1995) Multivariate Capability Vector, Taam et al. (1993) Multivariate Capability Index (MCpm), Pan and Lee (2010) proposal (NMCpm) and the followings based on Principal Component Analysis (PCA):Wang and Chen (1998), Xekalaki and Perakis (2002) and Wang (2005). Moreover, it includes two datasets.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-14 23:18:37 UTC; esantosf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:31:19

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New package Johnson with initial version 1.4
Package: Johnson
Type: Package
Title: Johnson Transformation
Version: 1.4
Date: 2014-04-15
Author: Edgar Santos Fernandez
Maintainer: Edgar Santos Fernandez
Description: RE.Johnson performs the Johnson Transformation to increase the normality.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-14 23:37:38 UTC; esantosf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:55:00

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Package EMP updated to version 1.0.1 with previous version 1.0 dated 2014-03-31

Title: EMP: Expected Maximum Profit for Credit Scoring.
Description: Functions for estimating EMP (Expected Maximum Profit Measure) in Credit Scoring, according to Verbraken et al (2014).
Author: Cristian Bravo and Thomas Verbraken
Maintainer: Cristian Bravo

Diff between EMP versions 1.0 dated 2014-03-31 and 1.0.1 dated 2014-04-15

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