Sat, 19 Apr 2014

Package investr updated to version 1.0.1 with previous version 1.0 dated 2013-08-09

Title: Inverse estimation/calibration functions
Description: This package provides functions to facilitate inverse estimation/calibration with linear and nonlinear regression models. A generic function is also provided for plotting fitted regression models with or without confidence/prediction bands that may be of use to the general user.
Author: Brandon M. Greenwell
Maintainer: Brandon M. Greenwell

Diff between investr versions 1.0 dated 2013-08-09 and 1.0.1 dated 2014-04-19

 investr-1.0.1/investr/DESCRIPTION                 |   21 
 investr-1.0.1/investr/MD5                         |   38 -
 investr-1.0.1/investr/NAMESPACE                   |    3 
 investr-1.0.1/investr/NEWS                        |   16 
 investr-1.0.1/investr/R/calibrate.R               |   54 +-
 investr-1.0.1/investr/R/invest.R                  |  128 +++--
 investr-1.0.1/investr/R/plotFit.R                 |only
 investr-1.0.1/investr/R/utilities.R               |  476 +---------------------
 investr-1.0.1/investr/README.md                   |   94 ++++
 investr-1.0.1/investr/inst/CITATION               |    5 
 investr-1.0.1/investr/inst/tests/test-all.R       |only
 investr-1.0.1/investr/inst/tests/test-calibrate.R |  152 +++----
 investr-1.0.1/investr/inst/tests/test-invest.R    |   96 ----
 investr-1.0.1/investr/inst/tests/test-utilities.R |only
 investr-1.0.1/investr/man/arsenic.Rd              |   14 
 investr-1.0.1/investr/man/calibrate.Rd            |   61 +-
 investr-1.0.1/investr/man/crystal.Rd              |   14 
 investr-1.0.1/investr/man/invest.Rd               |   71 +--
 investr-1.0.1/investr/man/investr-package.Rd      |   20 
 investr-1.0.1/investr/man/plotFit.Rd              |   86 ++-
 investr-1.0.1/investr/man/predict2.Rd             |   21 
 investr-1.0/investr/inst/tests/run-all.R          |only
 22 files changed, 512 insertions(+), 858 deletions(-)

More information about investr at CRAN
Permanent link

Package RTextureMetrics updated to version 1.1 with previous version 1.0 dated 2014-01-04

Title: Functions for calculation of texture metrics for Grey Level Co-occurrence Matrices
Description: This package contains several functions for calculation of texture metrics for Grey Level Co-occurrence matrices
Author: Hans-Joachim Klemmt
Maintainer: Hans-Joachim Klemmt

Diff between RTextureMetrics versions 1.0 dated 2014-01-04 and 1.1 dated 2014-04-19

 DESCRIPTION                    |    8 ++++----
 MD5                            |    8 +++++---
 R/genGLCM.R                    |   25 +++++++++++--------------
 R/plotGLCM.R                   |only
 man/RTextureMetrics-package.Rd |    5 +++--
 man/plotGLCM.Rd                |only
 6 files changed, 23 insertions(+), 23 deletions(-)

More information about RTextureMetrics at CRAN
Permanent link

New package RApiSerialize with initial version 0.1.0
Package: RApiSerialize
Type: Package
Title: R API Serialization
Version: 0.1.0
Date: 2014-04-19
Author: Dirk Eddelbuettel, Junji Nakano, Ei-ji Nakama, and R Core (original code)
Maintainer: Dirk Eddelbuettel
Description: This package provides other packages with access to the internal R serialization code. Access to this code is provided at the C function level by using the registration of native function mechanism. Client packages simply include a single header file RApiSerializeAPI.h provided by this package. This packages builds on the Rhpc package by Junji Nakano and Ei-ji Nakama which also includes a (partial) copy of the file src/main/serialize.c from R itself. The R Core group is the original author of the serialization code made available by this package.
License: GPL (>= 2)
Packaged: 2014-04-19 13:45:33.622462 UTC; edd
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-19 18:49:29

More information about RApiSerialize at CRAN
Permanent link

Package markovchain updated to version 0.0.9 with previous version 0.0.8 dated 2014-02-10

Title: A package to handle and analyse discrete Markov chains
Description: A package for easily handling discrete Markov chains
Author: Giorgio Alfredo Spedicato
Maintainer: Giorgio Alfredo Spedicato

Diff between markovchain versions 0.0.8 dated 2014-02-10 and 0.0.9 dated 2014-04-19

 ChangeLog                                            |    5 
 DESCRIPTION                                          |   10 
 MD5                                                  |   28 
 NAMESPACE                                            |    1 
 NEWS                                                 |    8 
 R/classesAndMethods.R                                |   17 
 R/functions4Fitting.R                                |   33 
 build/vignette.rds                                   |binary
 inst/doc/an_introduction_to_markovchain_package.R    |  170 ++--
 inst/doc/an_introduction_to_markovchain_package.Rnw  |  762 +++++++++----------
 inst/doc/an_introduction_to_markovchain_package.pdf  |binary
 man/markovchain-package.Rd                           |    4 
 man/markovchainFit.Rd                                |   12 
 vignettes/an_introduction_to_markovchain_package.Rnw |  762 +++++++++----------
 vignettes/markovchainBiblio.bib                      |   68 -
 15 files changed, 936 insertions(+), 944 deletions(-)

More information about markovchain at CRAN
Permanent link

Package multicon updated to version 1.2 with previous version 1.1 dated 2014-01-13

Title: Multivariate Constructs
Description: This packages includes functions designed to examine relationships among multivariate constructs.
Author: Ryne A. Sherman
Maintainer: Ryne A. Sherman

Diff between multicon versions 1.1 dated 2014-01-13 and 1.2 dated 2014-04-19

 DESCRIPTION         |    6 +++---
 MD5                 |   30 +++++++++++++++++++-----------
 R/bargraph.R        |    2 +-
 R/catseye.R         |    4 ++--
 R/composite.R       |   26 +++++++++++++++++++++++---
 R/decomp.r          |only
 R/diffPlot.R        |    2 +-
 R/egraph.R          |    4 ++--
 R/reQ.R             |    7 ++++++-
 R/structSumIPC.r    |only
 data/exsitu.RData   |only
 data/insitu.RData   |only
 man/composite.Rd    |   38 +++++++++++++++++++++++++++-----------
 man/decomp.Rd       |only
 man/exsitu.Rd       |only
 man/insitu.Rd       |only
 man/print.q.cor.rd  |    2 +-
 man/q.cor.print.Rd  |    2 +-
 man/reQ.Rd          |   11 +++++++----
 man/structSumIPC.Rd |only
 20 files changed, 93 insertions(+), 41 deletions(-)

More information about multicon at CRAN
Permanent link

Package meta updated to version 3.5-0 with previous version 3.2-1 dated 2014-03-26

Title: Meta-Analysis with R
Description: Fixed and random effects meta-analysis. Functions for tests of bias, forest and funnel plot.
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer

Diff between meta versions 3.2-1 dated 2014-03-26 and 3.5-0 dated 2014-04-19

 DESCRIPTION          |   13 ++--
 MD5                  |   51 ++++++++++---------
 NAMESPACE            |    4 -
 NEWS                 |   29 +++++++++++
 R/catmeth.R          |    3 -
 R/meta-internal.R    |  133 ++++++++++++++++++++++++++++++++++++---------------
 R/metabin.R          |   50 ++++++++-----------
 R/metacont.R         |   33 ++++++------
 R/metacor.R          |   23 ++++----
 R/metacr.R           |    4 -
 R/metagen.R          |   85 ++++++++++++++++++++++----------
 R/metainc.R          |   33 ++++++------
 R/metaprop.R         |   28 +++++-----
 R/metareg.R          |    5 +
 R/p.ci.R             |    6 +-
 R/paulemandel.R      |only
 R/settings.meta.R    |only
 man/metabin.Rd       |  125 ++++++++++++++++++++++++++---------------------
 man/metacont.Rd      |  114 ++++++++++++++++++++++++-------------------
 man/metacor.Rd       |  108 +++++++++++++++++++++++------------------
 man/metacr.Rd        |    8 +--
 man/metagen.Rd       |  107 +++++++++++++++++++++++++----------------
 man/metainc.Rd       |  113 +++++++++++++++++++++++--------------------
 man/metaprop.Rd      |   98 +++++++++++++++++++++----------------
 man/read.rm5.Rd      |    3 -
 man/settings.meta.Rd |only
 man/trimfill.meta.Rd |    6 +-
 man/update.meta.Rd   |    4 -
 28 files changed, 699 insertions(+), 487 deletions(-)

More information about meta at CRAN
Permanent link

Package seqminer updated to version 3.0 with previous version 2.7 dated 2014-04-14

Title: Efficiently Read Sequence Data (VCF format, BCF format and METAL format) into R
Description: Integrate sequencing data (VCF) or meta-analysis results in R
Author: Xiaowei Zhan and Dajiang Liu , with contributions of Jean-loup Gailly and Mark Adler (they wrote zlib and provide license so we include zlib source code), Julian Seward (this author wrote bzip2 and with BSD license we include bzip2 source codes) and Heng Li (this author wrote tabix and with MIT license we include tabix source codes).
Maintainer: Xiaowei Zhan

Diff between seqminer versions 2.7 dated 2014-04-14 and 3.0 dated 2014-04-19

 ChangeLog               |   16 +++++++++
 DESCRIPTION             |    6 +--
 MD5                     |   33 +++++++++++---------
 NAMESPACE               |    1 
 R/seqminer.R            |   43 ++++++++++++++++++++++++--
 inst/CITATION           |only
 man/annotateGene.Rd     |    5 ---
 man/getCovPair.Rd       |only
 man/isInRange.Rd        |only
 src/R_CPP_interface.cpp |   34 +++++++++++++++++++++
 src/R_CPP_interface.h   |    6 +++
 src/Rannotation.cpp     |   41 ++++++++++++++++++++-----
 src/StringTemplate.h    |    2 -
 src/StringUtil.h        |    2 -
 src/rvMetaLoader.cpp    |   77 +++++++++++++++++++++++++++++++++++++-----------
 src/rvMetaLoader.h      |    2 +
 src/seqminer.c          |    5 +++
 src/tabixLoader.cpp     |   22 +++++++++++--
 tests/tests.R           |   10 ++++++
 19 files changed, 248 insertions(+), 57 deletions(-)

More information about seqminer at CRAN
Permanent link

Package Reol updated to version 1.55 with previous version 1.53 dated 2013-12-06

Title: R interface to the Encyclopedia of Life
Description: An R interface to the Encyclopedia of Life API. Includes functions for downloading and extracting information off the EOL pages.
Author: Barb Banbury , Brian O'Meara
Maintainer: Barb Banbury

Diff between Reol versions 1.53 dated 2013-12-06 and 1.55 dated 2014-04-19

 DESCRIPTION                   |   16 +++++++++-------
 MD5                           |   38 +++++++++++++++++++++-----------------
 NAMESPACE                     |    2 +-
 R/CollectDataforWeb.R         |    4 ++--
 R/DownloadEOLpages.R          |    6 +++---
 R/DownloadHierarchy.R         |    6 +++---
 R/DownloadSearchedTaxa.R      |   12 ++++++------
 R/PageProcessing.R            |    6 +++---
 data/MyEOLs.rda               |binary
 data/MyHiers.rda              |binary
 inst/doc                      |only
 inst/tests                    |only
 man/DownloadHierarchy.Rd      |    3 ++-
 man/DownloadSearchedTaxa.Rd   |    5 +++--
 man/MakeEdgeLabels.Rd         |    1 +
 man/MatchHierPageToEOLdata.Rd |    1 +
 man/MatchTaxatoEOLID.Rd       |    3 ++-
 man/PageProcessing.Rd         |    3 ++-
 vignettes/ReolUserManual.pdf  |binary
 vignettes/ReolUserManual.tex  |    8 ++++----
 20 files changed, 63 insertions(+), 51 deletions(-)

More information about Reol at CRAN
Permanent link

Package openNLP updated to version 0.2-3 with previous version 0.2-2 dated 2014-01-25

Title: Apache OpenNLP Tools Interface
Description: An interface to the Apache OpenNLP tools (version 1.5.3). The Apache OpenNLP library is a machine learning based toolkit for the processing of natural language text written in Java. It supports the most common NLP tasks, such as tokenization, sentence segmentation, part-of-speech tagging, named entity extraction, chunking, parsing, and coreference resolution. See for more information.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik

Diff between openNLP versions 0.2-2 dated 2014-01-25 and 0.2-3 dated 2014-04-19

 DESCRIPTION    |    8 ++++----
 MD5            |   18 +++++++++---------
 NAMESPACE      |    3 ++-
 R/chunk.R      |    4 ++--
 R/ner.R        |    4 ++--
 R/parse.R      |    2 +-
 R/pos.R        |    4 ++--
 R/sentdetect.R |    2 +-
 R/tokenize.R   |    2 +-
 R/utils.R      |   13 -------------
 10 files changed, 24 insertions(+), 36 deletions(-)

More information about openNLP at CRAN
Permanent link

Package pdfetch updated to version 0.1.3 with previous version 0.1.2 dated 2014-03-15

Title: Fetch economic and financial time series data from public sources
Description: A package for downloading economic and financial time series from public sources.
Author: Abiel Reinhart
Maintainer: Abiel Reinhart

Diff between pdfetch versions 0.1.2 dated 2014-03-15 and 0.1.3 dated 2014-04-19

 DESCRIPTION               |    8 -
 MD5                       |   15 ++-
 NAMESPACE                 |    3 
 NEWS                      |    7 +
 R/pdfetch.R               |  207 ++++++++++++++++++++++++++++++++++++++++++++++
 README.md                 |   14 ++-
 inst/tests/test-pdfetch.R |   20 ++++
 man/pdfetch_BLS.Rd        |only
 man/pdfetch_INSEE.Rd      |only
 man/pdfetch_ONS.Rd        |only
 10 files changed, 258 insertions(+), 16 deletions(-)

More information about pdfetch at CRAN
Permanent link

Package NLP updated to version 0.1-2 with previous version 0.1-1 dated 2014-01-25

Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik

Diff between NLP versions 0.1-1 dated 2014-01-25 and 0.1-2 dated 2014-04-19

 DESCRIPTION                       |    7 +++--
 MD5                               |   32 +++++++++++++-----------
 NAMESPACE                         |   22 +++++++++++++---
 R/annotators.R                    |   50 +++++++++++++++++++-------------------
 R/aptd.R                          |   11 +++++---
 R/conll.R                         |    8 ++++++
 R/generics.R                      |only
 R/sysdata.rda                     |binary
 R/tagged.R                        |    8 ++++++
 R/wordlist.R                      |   19 +++++++++-----
 man/AnnotatedPlainTextDocument.Rd |   10 +++++--
 man/Annotator.Rd                  |    2 -
 man/CoNLLTextDocument.Rd          |    7 +++--
 man/TaggedTextDocument.Rd         |    4 +--
 man/TextDocument.Rd               |only
 man/WordListDocument.Rd           |    8 ++++--
 man/generics.Rd                   |only
 man/utils.Rd                      |only
 man/viewers.Rd                    |   25 +++----------------
 19 files changed, 127 insertions(+), 86 deletions(-)

More information about NLP at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.